Wall clock time and date at job start Mon Mar 30 2020 03:19:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.50169 * 1
3 3 C 1.49443 * 106.59050 * 2 1
4 4 C 1.51189 * 114.17989 * 305.92704 * 3 2 1
5 5 C 1.53158 * 110.71074 * 260.70003 * 4 3 2
6 6 C 1.52931 * 109.39555 * 148.46174 * 5 4 3
7 7 C 1.52915 * 109.72650 * 229.89955 * 6 5 4
8 8 N 1.47838 * 109.09905 * 101.95401 * 7 6 5
9 9 C 1.37112 * 121.87319 * 90.53615 * 8 7 6
10 10 H 1.08010 * 119.99996 * 325.35437 * 9 8 7
11 11 C 1.38808 * 120.00447 * 145.35006 * 9 8 7
12 12 N 1.31622 * 120.00132 * 333.00526 * 11 9 8
13 13 Si 1.86803 * 119.99885 * 152.99699 * 11 9 8
14 14 H 1.48499 * 109.47193 * 0.02562 * 13 11 9
15 15 H 1.48501 * 109.46992 * 240.00374 * 13 11 9
16 16 H 1.48501 * 109.46631 * 120.00554 * 13 11 9
17 17 C 1.47823 * 116.68936 * 270.15975 * 8 7 6
18 18 C 1.54016 * 108.69606 * 83.79158 * 17 8 7
19 19 C 1.49355 * 107.42806 * 246.32845 * 2 1 3
20 20 H 1.09003 * 109.46875 * 177.31616 * 1 2 3
21 21 H 1.08993 * 109.47311 * 297.32311 * 1 2 3
22 22 H 1.08999 * 109.46923 * 57.32129 * 1 2 3
23 23 H 1.09704 * 107.15272 * 68.05617 * 3 2 1
24 24 H 1.09517 * 107.07291 * 183.76449 * 3 2 1
25 25 H 1.07827 * 114.86519 * 25.93760 * 4 3 2
26 26 H 1.10919 * 108.00260 * 144.00784 * 4 3 2
27 27 H 1.09347 * 109.12667 * 267.62750 * 5 4 3
28 28 H 1.08644 * 110.21304 * 27.56958 * 5 4 3
29 29 H 1.08980 * 109.63192 * 350.32924 * 6 5 4
30 30 H 1.09120 * 109.35471 * 110.08196 * 6 5 4
31 31 H 1.08915 * 109.92557 * 341.60788 * 7 6 5
32 32 H 1.09236 * 109.69681 * 221.38795 * 7 6 5
33 33 H 0.97001 * 119.99804 * 354.46995 * 12 11 9
34 34 H 1.08756 * 110.01002 * 203.42555 * 17 8 7
35 35 H 1.08781 * 109.79595 * 324.63325 * 17 8 7
36 36 H 1.08528 * 107.49317 * 355.20127 * 18 17 8
37 37 H 1.09264 * 107.36141 * 113.38599 * 18 17 8
38 38 H 1.09912 * 106.64613 * 261.67764 * 19 2 1
39 39 H 1.08918 * 108.04282 * 145.83907 * 19 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.5017 0.0000 0.0000
3 6 1.9284 1.4322 0.0000
4 6 1.3296 2.2568 -1.1169
5 6 2.3259 2.4118 -2.2697
6 6 1.5625 2.5049 -3.5916
7 6 2.1559 1.5211 -4.6007
8 7 1.2841 0.3301 -4.6851
9 6 0.2541 0.2492 -5.5865
10 1 -0.3062 1.1351 -5.8472
11 6 -0.0686 -0.9710 -6.1642
12 7 0.8538 -1.9005 -6.2975
13 14 -1.8120 -1.2941 -6.7523
14 1 -2.6523 -0.0981 -6.4903
15 1 -2.3713 -2.4616 -6.0248
16 1 -1.7978 -1.5791 -8.2096
17 6 1.5820 -0.7782 -3.7534
18 6 0.9078 -0.4808 -2.4009
19 6 1.9490 -0.5721 -1.3051
20 1 -0.3633 -1.0266 -0.0481
21 1 -0.3633 0.4717 0.9129
22 1 -0.3633 0.5549 -0.8650
23 1 1.6454 1.8541 0.9723
24 1 3.0214 1.4421 -0.0687
25 1 0.3862 1.8942 -1.4925
26 1 1.1317 3.2747 -0.7233
27 1 2.9009 3.3307 -2.1253
28 1 3.0056 1.5647 -2.2949
29 1 0.5117 2.2688 -3.4250
30 1 1.6452 3.5189 -3.9863
31 1 3.1550 1.2234 -4.2855
32 1 2.2130 1.9923 -5.5845
33 1 1.7755 -1.7057 -6.0666
34 1 1.1935 -1.7130 -4.1507
35 1 2.6567 -0.8552 -3.6041
36 1 0.4640 0.5073 -2.4679
37 1 0.1262 -1.2302 -2.2545
38 1 2.1887 -1.6287 -1.1201
39 1 2.8677 -0.0657 -1.5983
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000885790905.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:56
Heat of formation + Delta-G solvation = 11.279450 kcal
Electronic energy + Delta-G solvation = -17355.395953 eV
Core-core repulsion = 14912.034522 eV
Total energy + Delta-G solvation = -2443.361431 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-40.25931 -37.60432 -35.56606 -33.71606 -31.61447 -30.36116 -27.88611 -27.00756
-24.92674 -24.30615 -22.06900 -21.36229 -20.91577 -19.26553 -17.49781 -16.61289
-16.00213 -15.88109 -15.47647 -15.22606 -15.16738 -14.83461 -14.32106 -13.92204
-13.33645 -13.18586 -12.92422 -12.65759 -12.61510 -12.42992 -12.33889 -12.28205
-12.08902 -11.91313 -11.68826 -11.63369 -11.43054 -11.14857 -10.87471 -10.39902
-9.60154 -8.83560 -8.16933 -5.46045 1.55987 1.62886 1.79366 2.62741
3.15186 3.27092 3.51208 3.79757 3.94566 4.04410 4.08124 4.17716
4.40248 4.43254 4.46151 4.55725 4.59429 4.66010 4.76677 4.80698
4.90680 4.93443 4.97078 5.04032 5.09418 5.13229 5.16729 5.33140
5.43188 5.46586 5.56229 5.69254 5.79808 5.88218 5.91515 6.39846
7.07977 7.76577 8.29877 8.97407
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.030889 B = 0.009236 C = 0.008320
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 906.252899 B = 3030.934847 C = 3364.592450
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.014 4.014
2 N -0.486 5.486
3 C 0.026 3.974
4 C -0.145 4.145
5 C -0.109 4.109
6 C -0.127 4.127
7 C 0.137 3.863
8 N -0.612 5.612
9 C -0.345 4.345
10 H 0.039 0.961
11 C -0.070 4.070
12 N -0.932 5.932
13 Si 1.111 2.889
14 H -0.275 1.275
15 H -0.287 1.287
16 H -0.291 1.291
17 C 0.142 3.858
18 C -0.145 4.145
19 C 0.036 3.964
20 H 0.060 0.940
21 H 0.079 0.921
22 H 0.043 0.957
23 H 0.083 0.917
24 H 0.076 0.924
25 H 0.063 0.937
26 H 0.070 0.930
27 H 0.072 0.928
28 H 0.056 0.944
29 H 0.047 0.953
30 H 0.058 0.942
31 H 0.045 0.955
32 H 0.024 0.976
33 H 0.254 0.746
34 H 0.037 0.963
35 H 0.032 0.968
36 H 0.083 0.917
37 H 0.036 0.964
38 H 0.058 0.942
39 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.286 7.481 11.951 14.158
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 N -0.207 5.207
3 C -0.102 4.102
4 C -0.183 4.183
5 C -0.146 4.146
6 C -0.166 4.166
7 C 0.012 3.988
8 N -0.336 5.336
9 C -0.474 4.474
10 H 0.057 0.943
11 C -0.268 4.268
12 N -0.573 5.573
13 Si 0.936 3.064
14 H -0.200 1.200
15 H -0.214 1.214
16 H -0.217 1.217
17 C 0.015 3.985
18 C -0.186 4.186
19 C -0.092 4.092
20 H 0.078 0.922
21 H 0.098 0.902
22 H 0.061 0.939
23 H 0.101 0.899
24 H 0.094 0.906
25 H 0.082 0.918
26 H 0.088 0.912
27 H 0.091 0.909
28 H 0.075 0.925
29 H 0.066 0.934
30 H 0.076 0.924
31 H 0.064 0.936
32 H 0.043 0.957
33 H 0.064 0.936
34 H 0.056 0.944
35 H 0.050 0.950
36 H 0.102 0.898
37 H 0.055 0.945
38 H 0.077 0.923
39 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 0.528 6.039 11.795 13.261
hybrid contribution 0.737 1.377 -0.583 1.667
sum 1.265 7.416 11.212 13.502
Atomic orbital electron populations
1.23373 0.89212 1.02010 1.01685 1.68894 1.09522 1.13867 1.28414
1.22831 1.00715 0.88372 0.98279 1.21978 0.98831 1.01234 0.96296
1.21845 0.97620 1.01753 0.93417 1.22209 0.99555 0.98578 0.96302
1.21468 0.92388 0.88429 0.96487 1.44861 1.34345 1.15948 1.38400
1.19954 1.09414 0.97008 1.21061 0.94289 1.27107 1.07751 0.94994
0.96923 1.70838 1.01913 1.38297 1.46246 0.82926 0.71814 0.75845
0.75835 1.20013 1.21384 1.21747 1.21310 0.95879 0.92092 0.89215
1.22484 0.98439 1.02179 0.95464 1.22663 0.97654 1.00369 0.88521
0.92153 0.90220 0.93899 0.89899 0.90592 0.91838 0.91161 0.90895
0.92535 0.93379 0.92375 0.93642 0.95711 0.93625 0.94423 0.94983
0.89842 0.94495 0.92315 0.91272
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.01 -0.37 8.20 127.05 1.04 0.67 16
2 N -0.49 -13.35 6.27 -902.44 -5.66 -19.01 16
3 C 0.03 0.62 5.11 85.22 0.44 1.05 16
4 C -0.14 -3.59 4.27 30.06 0.13 -3.46 16
5 C -0.11 -2.93 4.79 30.62 0.15 -2.79 16
6 C -0.13 -4.28 5.28 30.54 0.16 -4.12 16
7 C 0.14 5.67 5.96 86.09 0.51 6.18 16
8 N -0.61 -30.15 2.01 -693.61 -1.40 -31.55 16
9 C -0.34 -19.27 9.60 84.00 0.81 -18.46 16
10 H 0.04 2.24 7.96 -2.91 -0.02 2.21 16
11 C -0.07 -3.99 4.83 84.86 0.41 -3.58 16
12 N -0.93 -56.78 12.27 21.65 0.27 -56.52 16
13 Si 1.11 51.52 30.00 68.60 2.06 53.58 16
14 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16
15 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16
16 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16
17 C 0.14 6.52 5.16 86.47 0.45 6.96 16
18 C -0.15 -5.51 3.59 30.43 0.11 -5.40 16
19 C 0.04 1.15 4.66 85.31 0.40 1.55 16
20 H 0.06 1.64 7.94 -2.39 -0.02 1.62 16
21 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16
22 H 0.04 1.24 4.20 -2.39 -0.01 1.23 16
23 H 0.08 1.66 8.20 -2.01 -0.02 1.64 16
24 H 0.08 1.71 7.41 -2.11 -0.02 1.69 16
25 H 0.06 1.86 3.50 -3.00 -0.01 1.85 16
26 H 0.07 1.47 8.29 -1.35 -0.01 1.46 16
27 H 0.07 1.65 8.17 -2.20 -0.02 1.63 16
28 H 0.06 1.63 4.68 -2.57 -0.01 1.62 16
29 H 0.05 1.85 6.04 -2.40 -0.01 1.83 16
30 H 0.06 1.78 8.15 -2.32 -0.02 1.76 16
31 H 0.05 1.75 6.94 -2.43 -0.02 1.74 16
32 H 0.02 1.08 8.10 -2.26 -0.02 1.06 16
33 H 0.25 15.80 7.24 -92.71 -0.67 15.13 16
34 H 0.04 2.03 5.73 -2.52 -0.01 2.01 16
35 H 0.03 1.39 7.06 -2.50 -0.02 1.38 16
36 H 0.08 3.23 2.53 -2.64 -0.01 3.23 16
37 H 0.04 1.47 7.71 -2.25 -0.02 1.45 16
38 H 0.06 1.88 8.22 -1.90 -0.02 1.87 16
39 H 0.07 2.14 5.06 -2.43 -0.01 2.13 16
Total: -1.00 -61.77 274.58 1.00 -60.76
By element:
Atomic # 1 Polarization: 13.00 SS G_CDS: 1.14 Total: 14.14 kcal
Atomic # 6 Polarization: -26.00 SS G_CDS: 4.60 Total: -21.40 kcal
Atomic # 7 Polarization: -100.29 SS G_CDS: -6.79 Total: -107.08 kcal
Atomic # 14 Polarization: 51.52 SS G_CDS: 2.06 Total: 53.58 kcal
Total: -61.77 1.00 -60.76 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000885790905.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.044 kcal
(2) G-P(sol) polarization free energy of solvation -61.767 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.276 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.003 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.764 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.279 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds