Wall clock time and date at job start Mon Mar 30 2020 03:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.50169 * 1 3 3 C 1.49443 * 106.59050 * 2 1 4 4 C 1.51189 * 114.17989 * 305.92704 * 3 2 1 5 5 C 1.53158 * 110.71074 * 260.70003 * 4 3 2 6 6 C 1.52931 * 109.39555 * 148.46174 * 5 4 3 7 7 C 1.52915 * 109.72650 * 229.89955 * 6 5 4 8 8 N 1.47838 * 109.09905 * 101.95401 * 7 6 5 9 9 C 1.37112 * 121.87319 * 90.53615 * 8 7 6 10 10 H 1.08010 * 119.99996 * 325.35437 * 9 8 7 11 11 C 1.38808 * 120.00447 * 145.35006 * 9 8 7 12 12 N 1.31622 * 120.00132 * 333.00526 * 11 9 8 13 13 Si 1.86803 * 119.99885 * 152.99699 * 11 9 8 14 14 H 1.48499 * 109.47193 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46992 * 240.00374 * 13 11 9 16 16 H 1.48501 * 109.46631 * 120.00554 * 13 11 9 17 17 C 1.47823 * 116.68936 * 270.15975 * 8 7 6 18 18 C 1.54016 * 108.69606 * 83.79158 * 17 8 7 19 19 C 1.49355 * 107.42806 * 246.32845 * 2 1 3 20 20 H 1.09003 * 109.46875 * 177.31616 * 1 2 3 21 21 H 1.08993 * 109.47311 * 297.32311 * 1 2 3 22 22 H 1.08999 * 109.46923 * 57.32129 * 1 2 3 23 23 H 1.09704 * 107.15272 * 68.05617 * 3 2 1 24 24 H 1.09517 * 107.07291 * 183.76449 * 3 2 1 25 25 H 1.07827 * 114.86519 * 25.93760 * 4 3 2 26 26 H 1.10919 * 108.00260 * 144.00784 * 4 3 2 27 27 H 1.09347 * 109.12667 * 267.62750 * 5 4 3 28 28 H 1.08644 * 110.21304 * 27.56958 * 5 4 3 29 29 H 1.08980 * 109.63192 * 350.32924 * 6 5 4 30 30 H 1.09120 * 109.35471 * 110.08196 * 6 5 4 31 31 H 1.08915 * 109.92557 * 341.60788 * 7 6 5 32 32 H 1.09236 * 109.69681 * 221.38795 * 7 6 5 33 33 H 0.97001 * 119.99804 * 354.46995 * 12 11 9 34 34 H 1.08756 * 110.01002 * 203.42555 * 17 8 7 35 35 H 1.08781 * 109.79595 * 324.63325 * 17 8 7 36 36 H 1.08528 * 107.49317 * 355.20127 * 18 17 8 37 37 H 1.09264 * 107.36141 * 113.38599 * 18 17 8 38 38 H 1.09912 * 106.64613 * 261.67764 * 19 2 1 39 39 H 1.08918 * 108.04282 * 145.83907 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.5017 0.0000 0.0000 3 6 1.9284 1.4322 0.0000 4 6 1.3296 2.2568 -1.1169 5 6 2.3259 2.4118 -2.2697 6 6 1.5625 2.5049 -3.5916 7 6 2.1559 1.5211 -4.6007 8 7 1.2841 0.3301 -4.6851 9 6 0.2541 0.2492 -5.5865 10 1 -0.3062 1.1351 -5.8472 11 6 -0.0686 -0.9710 -6.1642 12 7 0.8538 -1.9005 -6.2975 13 14 -1.8120 -1.2941 -6.7523 14 1 -2.6523 -0.0981 -6.4903 15 1 -2.3713 -2.4616 -6.0248 16 1 -1.7978 -1.5791 -8.2096 17 6 1.5820 -0.7782 -3.7534 18 6 0.9078 -0.4808 -2.4009 19 6 1.9490 -0.5721 -1.3051 20 1 -0.3633 -1.0266 -0.0481 21 1 -0.3633 0.4717 0.9129 22 1 -0.3633 0.5549 -0.8650 23 1 1.6454 1.8541 0.9723 24 1 3.0214 1.4421 -0.0687 25 1 0.3862 1.8942 -1.4925 26 1 1.1317 3.2747 -0.7233 27 1 2.9009 3.3307 -2.1253 28 1 3.0056 1.5647 -2.2949 29 1 0.5117 2.2688 -3.4250 30 1 1.6452 3.5189 -3.9863 31 1 3.1550 1.2234 -4.2855 32 1 2.2130 1.9923 -5.5845 33 1 1.7755 -1.7057 -6.0666 34 1 1.1935 -1.7130 -4.1507 35 1 2.6567 -0.8552 -3.6041 36 1 0.4640 0.5073 -2.4679 37 1 0.1262 -1.2302 -2.2545 38 1 2.1887 -1.6287 -1.1201 39 1 2.8677 -0.0657 -1.5983 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885790905.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:56 Heat of formation + Delta-G solvation = 11.279450 kcal Electronic energy + Delta-G solvation = -17355.395953 eV Core-core repulsion = 14912.034522 eV Total energy + Delta-G solvation = -2443.361431 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.25931 -37.60432 -35.56606 -33.71606 -31.61447 -30.36116 -27.88611 -27.00756 -24.92674 -24.30615 -22.06900 -21.36229 -20.91577 -19.26553 -17.49781 -16.61289 -16.00213 -15.88109 -15.47647 -15.22606 -15.16738 -14.83461 -14.32106 -13.92204 -13.33645 -13.18586 -12.92422 -12.65759 -12.61510 -12.42992 -12.33889 -12.28205 -12.08902 -11.91313 -11.68826 -11.63369 -11.43054 -11.14857 -10.87471 -10.39902 -9.60154 -8.83560 -8.16933 -5.46045 1.55987 1.62886 1.79366 2.62741 3.15186 3.27092 3.51208 3.79757 3.94566 4.04410 4.08124 4.17716 4.40248 4.43254 4.46151 4.55725 4.59429 4.66010 4.76677 4.80698 4.90680 4.93443 4.97078 5.04032 5.09418 5.13229 5.16729 5.33140 5.43188 5.46586 5.56229 5.69254 5.79808 5.88218 5.91515 6.39846 7.07977 7.76577 8.29877 8.97407 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.030889 B = 0.009236 C = 0.008320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.252899 B = 3030.934847 C = 3364.592450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.486 5.486 3 C 0.026 3.974 4 C -0.145 4.145 5 C -0.109 4.109 6 C -0.127 4.127 7 C 0.137 3.863 8 N -0.612 5.612 9 C -0.345 4.345 10 H 0.039 0.961 11 C -0.070 4.070 12 N -0.932 5.932 13 Si 1.111 2.889 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.291 1.291 17 C 0.142 3.858 18 C -0.145 4.145 19 C 0.036 3.964 20 H 0.060 0.940 21 H 0.079 0.921 22 H 0.043 0.957 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.024 0.976 33 H 0.254 0.746 34 H 0.037 0.963 35 H 0.032 0.968 36 H 0.083 0.917 37 H 0.036 0.964 38 H 0.058 0.942 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.286 7.481 11.951 14.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 N -0.207 5.207 3 C -0.102 4.102 4 C -0.183 4.183 5 C -0.146 4.146 6 C -0.166 4.166 7 C 0.012 3.988 8 N -0.336 5.336 9 C -0.474 4.474 10 H 0.057 0.943 11 C -0.268 4.268 12 N -0.573 5.573 13 Si 0.936 3.064 14 H -0.200 1.200 15 H -0.214 1.214 16 H -0.217 1.217 17 C 0.015 3.985 18 C -0.186 4.186 19 C -0.092 4.092 20 H 0.078 0.922 21 H 0.098 0.902 22 H 0.061 0.939 23 H 0.101 0.899 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.102 0.898 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.528 6.039 11.795 13.261 hybrid contribution 0.737 1.377 -0.583 1.667 sum 1.265 7.416 11.212 13.502 Atomic orbital electron populations 1.23373 0.89212 1.02010 1.01685 1.68894 1.09522 1.13867 1.28414 1.22831 1.00715 0.88372 0.98279 1.21978 0.98831 1.01234 0.96296 1.21845 0.97620 1.01753 0.93417 1.22209 0.99555 0.98578 0.96302 1.21468 0.92388 0.88429 0.96487 1.44861 1.34345 1.15948 1.38400 1.19954 1.09414 0.97008 1.21061 0.94289 1.27107 1.07751 0.94994 0.96923 1.70838 1.01913 1.38297 1.46246 0.82926 0.71814 0.75845 0.75835 1.20013 1.21384 1.21747 1.21310 0.95879 0.92092 0.89215 1.22484 0.98439 1.02179 0.95464 1.22663 0.97654 1.00369 0.88521 0.92153 0.90220 0.93899 0.89899 0.90592 0.91838 0.91161 0.90895 0.92535 0.93379 0.92375 0.93642 0.95711 0.93625 0.94423 0.94983 0.89842 0.94495 0.92315 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.37 8.20 127.05 1.04 0.67 16 2 N -0.49 -13.35 6.27 -902.44 -5.66 -19.01 16 3 C 0.03 0.62 5.11 85.22 0.44 1.05 16 4 C -0.14 -3.59 4.27 30.06 0.13 -3.46 16 5 C -0.11 -2.93 4.79 30.62 0.15 -2.79 16 6 C -0.13 -4.28 5.28 30.54 0.16 -4.12 16 7 C 0.14 5.67 5.96 86.09 0.51 6.18 16 8 N -0.61 -30.15 2.01 -693.61 -1.40 -31.55 16 9 C -0.34 -19.27 9.60 84.00 0.81 -18.46 16 10 H 0.04 2.24 7.96 -2.91 -0.02 2.21 16 11 C -0.07 -3.99 4.83 84.86 0.41 -3.58 16 12 N -0.93 -56.78 12.27 21.65 0.27 -56.52 16 13 Si 1.11 51.52 30.00 68.60 2.06 53.58 16 14 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 15 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 16 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 17 C 0.14 6.52 5.16 86.47 0.45 6.96 16 18 C -0.15 -5.51 3.59 30.43 0.11 -5.40 16 19 C 0.04 1.15 4.66 85.31 0.40 1.55 16 20 H 0.06 1.64 7.94 -2.39 -0.02 1.62 16 21 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.04 1.24 4.20 -2.39 -0.01 1.23 16 23 H 0.08 1.66 8.20 -2.01 -0.02 1.64 16 24 H 0.08 1.71 7.41 -2.11 -0.02 1.69 16 25 H 0.06 1.86 3.50 -3.00 -0.01 1.85 16 26 H 0.07 1.47 8.29 -1.35 -0.01 1.46 16 27 H 0.07 1.65 8.17 -2.20 -0.02 1.63 16 28 H 0.06 1.63 4.68 -2.57 -0.01 1.62 16 29 H 0.05 1.85 6.04 -2.40 -0.01 1.83 16 30 H 0.06 1.78 8.15 -2.32 -0.02 1.76 16 31 H 0.05 1.75 6.94 -2.43 -0.02 1.74 16 32 H 0.02 1.08 8.10 -2.26 -0.02 1.06 16 33 H 0.25 15.80 7.24 -92.71 -0.67 15.13 16 34 H 0.04 2.03 5.73 -2.52 -0.01 2.01 16 35 H 0.03 1.39 7.06 -2.50 -0.02 1.38 16 36 H 0.08 3.23 2.53 -2.64 -0.01 3.23 16 37 H 0.04 1.47 7.71 -2.25 -0.02 1.45 16 38 H 0.06 1.88 8.22 -1.90 -0.02 1.87 16 39 H 0.07 2.14 5.06 -2.43 -0.01 2.13 16 Total: -1.00 -61.77 274.58 1.00 -60.76 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 1.14 Total: 14.14 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: 4.60 Total: -21.40 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -6.79 Total: -107.08 kcal Atomic # 14 Polarization: 51.52 SS G_CDS: 2.06 Total: 53.58 kcal Total: -61.77 1.00 -60.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885790905.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.044 kcal (2) G-P(sol) polarization free energy of solvation -61.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds