Wall clock time and date at job start Mon Mar 30 2020 02:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30851 * 122.99894 * 2 1 4 4 C 1.30250 * 117.27421 * 179.97438 * 3 2 1 5 5 N 1.37815 * 124.73598 * 179.97438 * 4 3 2 6 6 S 1.70917 * 110.52915 * 0.26269 * 4 3 2 7 7 C 1.36858 * 123.00114 * 179.97438 * 2 1 3 8 8 C 1.41844 * 126.11165 * 0.04137 * 7 2 1 9 9 O 1.21790 * 120.00298 * 359.97438 * 8 7 2 10 10 N 1.34784 * 119.99772 * 179.97438 * 8 7 2 11 11 C 1.36923 * 120.00012 * 180.02562 * 10 8 7 12 12 H 1.07999 * 119.99759 * 359.97438 * 11 10 8 13 13 C 1.38963 * 119.99925 * 180.02562 * 11 10 8 14 14 N 1.31421 * 120.00059 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00027 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.46918 * 90.00286 * 15 13 11 17 17 H 1.48500 * 109.47136 * 210.00245 * 15 13 11 18 18 H 1.48504 * 109.47281 * 330.00608 * 15 13 11 19 19 H 1.09001 * 109.46895 * 90.02579 * 1 2 3 20 20 H 1.09001 * 109.47600 * 210.02498 * 1 2 3 21 21 H 1.09002 * 109.47357 * 330.02699 * 1 2 3 22 22 H 0.96996 * 120.00195 * 0.02562 * 5 4 3 23 23 H 0.97009 * 120.00196 * 179.72665 * 5 4 3 24 24 H 0.97000 * 119.99828 * 359.97438 * 10 8 7 25 25 H 0.97003 * 120.00223 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2196 1.0974 0.0000 4 6 3.5156 0.9675 0.0005 5 7 4.4100 2.0161 0.0001 6 16 3.9524 -0.6849 -0.0063 7 6 2.2524 -1.1478 0.0005 8 6 1.7467 -2.4730 0.0003 9 8 0.5442 -2.6660 0.0000 10 7 2.5970 -3.5188 0.0003 11 6 2.1089 -4.7980 -0.0004 12 1 1.0425 -4.9691 -0.0006 13 6 2.9856 -5.8762 0.0002 14 7 2.5171 -7.1041 -0.0001 15 14 4.8300 -5.5803 0.0013 16 1 5.3179 -5.5018 1.4017 17 1 5.5113 -6.6990 -0.6984 18 1 5.1271 -4.3046 -0.6985 19 1 -0.3633 -0.0005 -1.0277 20 1 -0.3634 -0.8897 0.5142 21 1 -0.3634 0.8902 0.5134 22 1 4.0856 2.9302 -0.0003 23 1 5.3639 1.8400 0.0045 24 1 3.5548 -3.3651 0.0001 25 1 3.1291 -7.8567 0.0000 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055175507.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:37 Heat of formation + Delta-G solvation = -15.083443 kcal Electronic energy + Delta-G solvation = -13245.237189 eV Core-core repulsion = 10770.560254 eV Total energy + Delta-G solvation = -2474.676935 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.047 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.22102 -39.89700 -36.29029 -35.79969 -33.84787 -31.55864 -29.79922 -26.62284 -24.80127 -22.72044 -21.25442 -20.00429 -19.43946 -17.88302 -17.44478 -16.80780 -16.47302 -16.31563 -15.24199 -15.20935 -14.77996 -14.49728 -14.25459 -13.78009 -13.37025 -13.04777 -12.50307 -12.26251 -12.02728 -11.70495 -11.53502 -10.92967 -10.47983 -10.36612 -10.28568 -8.89204 -8.47027 -6.03041 -0.50009 -0.00663 0.58808 1.25017 1.30286 1.38418 1.59325 2.17544 2.33414 2.34731 2.95411 3.17546 3.69763 4.13895 4.35833 4.76290 4.80455 4.90345 5.39857 5.48439 5.85642 5.89966 6.27310 6.50549 6.78969 6.93728 7.28510 7.82359 8.69719 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.035176 B = 0.009340 C = 0.007410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.797316 B = 2997.117735 C = 3777.767566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.190 3.810 3 N -0.568 5.568 4 C 0.334 3.666 5 N -0.779 5.779 6 S 0.145 5.855 7 C -0.357 4.357 8 C 0.532 3.468 9 O -0.608 6.608 10 N -0.583 5.583 11 C -0.326 4.326 12 H 0.067 0.933 13 C -0.008 4.008 14 N -0.922 5.922 15 Si 0.945 3.055 16 H -0.250 1.250 17 H -0.263 1.263 18 H -0.239 1.239 19 H 0.082 0.918 20 H 0.078 0.922 21 H 0.091 0.909 22 H 0.425 0.575 23 H 0.433 0.567 24 H 0.381 0.619 25 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.669 18.233 0.014 21.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.051 3.949 3 N -0.295 5.295 4 C -0.039 4.039 5 N -0.333 5.333 6 S 0.393 5.607 7 C -0.483 4.483 8 C 0.323 3.677 9 O -0.496 6.496 10 N -0.223 5.223 11 C -0.455 4.455 12 H 0.085 0.915 13 C -0.208 4.208 14 N -0.562 5.562 15 Si 0.765 3.235 16 H -0.174 1.174 17 H -0.187 1.187 18 H -0.162 1.162 19 H 0.101 0.899 20 H 0.097 0.903 21 H 0.110 0.890 22 H 0.259 0.741 23 H 0.267 0.733 24 H 0.217 0.783 25 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.737 17.878 0.004 20.855 hybrid contribution 0.035 -0.259 -0.021 0.263 sum 10.773 17.619 -0.017 20.651 Atomic orbital electron populations 1.20575 0.85941 1.03936 1.03687 1.20686 0.98419 0.84390 0.91415 1.66087 1.03012 1.30951 1.29418 1.23805 0.90980 0.94076 0.95028 1.41465 1.07006 1.05400 1.79390 1.83491 1.05111 0.98567 1.73578 1.24032 0.96083 0.98240 1.29962 1.15602 0.86248 0.83392 0.82483 1.90616 1.15810 1.85673 1.57533 1.41994 1.07508 1.05546 1.67204 1.19081 0.94788 0.81612 1.50027 0.91488 1.26014 1.04845 0.93925 0.95990 1.69773 1.38101 0.99136 1.49150 0.85637 0.77100 0.80237 0.80561 1.17441 1.18700 1.16234 0.89914 0.90328 0.89049 0.74116 0.73293 0.78334 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.83 9.67 71.24 0.69 -2.14 15 2 C 0.19 6.96 6.83 42.38 0.29 7.25 15 3 N -0.57 -17.46 10.54 -188.44 -1.99 -19.45 15 4 C 0.33 8.17 8.53 179.43 1.53 9.70 15 5 N -0.78 -9.99 9.04 -59.97 -0.54 -10.53 15 6 S 0.14 4.13 22.19 -56.49 -1.25 2.88 15 7 C -0.36 -14.42 6.32 22.84 0.14 -14.28 15 8 C 0.53 27.04 7.55 85.13 0.64 27.69 15 9 O -0.61 -35.08 13.73 -4.64 -0.06 -35.15 15 10 N -0.58 -30.07 5.07 -314.91 -1.60 -31.67 15 11 C -0.33 -19.66 10.16 84.07 0.85 -18.81 15 12 H 0.07 4.70 7.38 -2.91 -0.02 4.68 15 13 C -0.01 -0.43 5.50 84.93 0.47 0.04 15 14 N -0.92 -55.45 13.96 21.67 0.30 -55.15 15 15 Si 0.95 39.43 27.74 68.60 1.90 41.34 15 16 H -0.25 -9.79 7.11 99.48 0.71 -9.09 15 17 H -0.26 -10.53 7.11 99.48 0.71 -9.82 15 18 H -0.24 -8.76 6.52 99.48 0.65 -8.11 15 19 H 0.08 2.70 8.14 -2.39 -0.02 2.68 15 20 H 0.08 3.18 5.99 -2.39 -0.01 3.16 15 21 H 0.09 2.57 8.14 -2.39 -0.02 2.55 15 22 H 0.42 3.96 8.95 -92.71 -0.83 3.13 15 23 H 0.43 2.80 8.95 -92.70 -0.83 1.97 15 24 H 0.38 17.06 4.79 -92.71 -0.44 16.61 15 25 H 0.28 15.42 8.31 -92.71 -0.77 14.65 15 Total: -1.00 -76.37 238.22 0.49 -75.88 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -0.89 Total: 22.41 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 4.62 Total: 9.44 kcal Atomic # 7 Polarization: -112.98 SS G_CDS: -3.82 Total: -116.80 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -0.06 Total: -35.15 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 1.90 Total: 41.34 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -1.25 Total: 2.88 kcal Total: -76.37 0.49 -75.88 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055175507.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.797 kcal (2) G-P(sol) polarization free energy of solvation -76.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds