Wall clock time and date at job start Mon Mar 30 2020 02:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.35827 * 119.62719 * 269.72572 * 11 10 9 13 13 C 1.35430 * 120.68105 * 179.75925 * 12 11 10 14 14 Cl 1.73604 * 120.03394 * 180.26120 * 13 12 11 15 15 C 1.40262 * 119.92830 * 0.51809 * 13 12 11 16 16 C 1.36399 * 119.26648 * 359.74484 * 15 13 12 17 17 C 1.34657 * 119.62257 * 90.00439 * 11 10 9 18 18 O 1.22074 * 119.97561 * 359.97438 * 17 11 10 19 19 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 21 21 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 22 22 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 23 23 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 24 24 H 1.07998 * 119.65517 * 0.02562 * 12 11 10 25 25 H 1.07998 * 120.36924 * 179.72102 * 15 13 12 26 26 H 1.08003 * 120.34097 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 1.1824 -5.5148 1.1821 13 6 0.5013 -6.6850 1.2076 14 17 0.0817 -7.4133 2.7267 15 6 0.1399 -7.3108 0.0054 16 6 0.4776 -6.7248 -1.1791 17 6 1.1797 -5.5076 -1.1691 18 8 1.4879 -4.9727 -2.2223 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6241 -2.5568 0.8902 22 1 2.8720 -3.6043 -0.8894 23 1 2.8720 -3.6043 0.8905 24 1 1.4621 -5.0387 2.1103 25 1 -0.3994 -8.2464 0.0175 26 1 0.2077 -7.1912 -2.1150 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057879298.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:52 Heat of formation + Delta-G solvation = -19.465009 kcal Electronic energy + Delta-G solvation = -13127.660175 eV Core-core repulsion = 10618.456783 eV Total energy + Delta-G solvation = -2509.203392 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.045 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.04434 -37.06933 -36.13934 -34.82393 -32.95749 -30.15236 -29.31616 -25.58311 -23.77156 -22.74991 -21.03169 -17.46990 -17.32719 -16.46067 -16.11038 -15.34174 -14.63148 -14.40458 -14.06209 -13.17340 -12.77317 -12.64982 -12.45761 -12.36311 -11.79563 -11.09483 -11.02778 -10.93874 -10.63415 -10.21514 -10.15970 -9.69542 -9.47393 -9.30219 -8.48313 -7.68128 -6.12623 -4.17774 0.93563 1.84661 2.05960 3.15443 3.26936 3.33447 3.35838 3.82069 4.36872 4.66783 4.87592 4.95204 5.24028 5.28265 5.68595 5.94082 6.04352 6.12882 6.13831 6.46610 6.56918 7.24336 7.44469 7.58784 7.82707 8.16711 8.32244 8.87247 9.47312 10.98755 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.036636 B = 0.006519 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.088455 B = 4293.783815 C = 4759.734995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.014 3.986 10 C 0.088 3.912 11 N -0.478 5.478 12 C 0.171 3.829 13 C -0.170 4.170 14 Cl -0.062 7.062 15 C -0.013 4.013 16 C -0.235 4.235 17 C 0.507 3.493 18 O -0.538 6.538 19 H 0.263 0.737 20 H 0.028 0.972 21 H 0.021 0.979 22 H 0.094 0.906 23 H 0.083 0.917 24 H 0.169 0.831 25 H 0.139 0.861 26 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.929 -13.991 4.760 14.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.024 4.024 10 C -0.031 4.031 11 N -0.185 5.185 12 C 0.039 3.961 13 C -0.203 4.203 14 Cl -0.034 7.034 15 C -0.035 4.035 16 C -0.257 4.257 17 C 0.308 3.692 18 O -0.419 6.419 19 H 0.073 0.927 20 H 0.046 0.954 21 H 0.040 0.960 22 H 0.113 0.887 23 H 0.101 0.899 24 H 0.186 0.814 25 H 0.156 0.844 26 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.981 -13.517 4.167 14.179 hybrid contribution 0.219 0.826 0.271 0.896 sum 1.200 -12.692 4.438 13.499 Atomic orbital electron populations 1.69964 1.06168 1.27023 1.49678 1.24998 0.94878 0.99458 0.94787 0.86491 0.79707 0.82920 0.78295 1.20465 1.21104 1.19719 1.20972 0.93084 0.90199 1.52250 0.92183 1.19423 0.94037 0.90552 0.98371 1.22639 0.96427 0.80295 1.03708 1.46025 1.45038 1.21840 1.05628 1.21807 0.91739 0.91344 0.91244 1.19721 1.13522 0.98999 0.88017 1.98339 1.92770 1.82486 1.29831 1.21185 0.93671 0.98367 0.90256 1.22090 1.06823 0.97499 0.99325 1.17187 0.82118 0.86593 0.83265 1.90987 1.56050 1.65525 1.29340 0.92700 0.95408 0.96049 0.88727 0.89914 0.81401 0.84366 0.83009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.42 13.29 55.43 0.74 -25.68 15 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 15 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 15 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 7 C -0.53 -14.41 9.11 -34.44 -0.31 -14.73 15 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 15 9 C 0.01 0.35 5.30 -27.88 -0.15 0.20 15 10 C 0.09 1.76 5.27 -4.04 -0.02 1.74 15 11 N -0.48 -8.50 2.59 -119.73 -0.31 -8.81 15 12 C 0.17 2.45 10.04 -16.78 -0.17 2.28 15 13 C -0.17 -2.19 6.29 -39.82 -0.25 -2.44 15 14 Cl -0.06 -0.70 28.95 -51.86 -1.50 -2.20 15 15 C -0.01 -0.16 9.89 -39.48 -0.39 -0.55 15 16 C -0.24 -3.47 9.99 -39.38 -0.39 -3.86 15 17 C 0.51 9.67 7.41 -15.45 -0.11 9.56 15 18 O -0.54 -12.47 16.64 4.85 0.08 -12.39 15 19 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 20 H 0.03 0.80 8.14 -51.93 -0.42 0.37 15 21 H 0.02 0.55 8.14 -51.93 -0.42 0.13 15 22 H 0.09 1.99 7.39 -51.93 -0.38 1.61 15 23 H 0.08 1.41 8.01 -51.93 -0.42 0.99 15 24 H 0.17 2.01 8.03 -52.49 -0.42 1.59 15 25 H 0.14 1.27 8.06 -52.49 -0.42 0.84 15 26 H 0.15 1.94 8.06 -52.48 -0.42 1.52 15 LS Contribution 252.96 15.07 3.81 3.81 Total: -1.00 -31.71 252.96 -6.55 -38.26 By element: Atomic # 1 Polarization: -0.56 SS G_CDS: -2.45 Total: -3.01 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -1.90 Total: -6.18 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.43 Total: -34.49 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.08 Total: -12.39 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -31.71 -6.55 -38.26 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057879298.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.798 kcal (2) G-P(sol) polarization free energy of solvation -31.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds