Wall clock time and date at job start Mon Mar 30 2020 02:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.35827 * 119.62719 * 269.72572 * 11 10 9 13 13 C 1.35430 * 120.68105 * 179.75925 * 12 11 10 14 14 Cl 1.73604 * 120.03394 * 180.26120 * 13 12 11 15 15 C 1.40262 * 119.92830 * 0.51809 * 13 12 11 16 16 C 1.36399 * 119.26648 * 359.74484 * 15 13 12 17 17 C 1.34657 * 119.62257 * 90.00439 * 11 10 9 18 18 O 1.22074 * 119.97561 * 359.97438 * 17 11 10 19 19 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 21 21 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 22 22 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 23 23 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 24 24 H 1.07998 * 119.65517 * 0.02562 * 12 11 10 25 25 H 1.07998 * 120.36924 * 179.72102 * 15 13 12 26 26 H 1.08003 * 120.34097 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 1.1824 -5.5148 1.1821 13 6 0.5013 -6.6850 1.2076 14 17 0.0817 -7.4133 2.7267 15 6 0.1399 -7.3108 0.0054 16 6 0.4776 -6.7248 -1.1791 17 6 1.1797 -5.5076 -1.1691 18 8 1.4879 -4.9727 -2.2223 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6241 -2.5568 0.8902 22 1 2.8720 -3.6043 -0.8894 23 1 2.8720 -3.6043 0.8905 24 1 1.4621 -5.0387 2.1103 25 1 -0.3994 -8.2464 0.0175 26 1 0.2077 -7.1912 -2.1150 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057879298.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:52 Heat of formation + Delta-G solvation = -39.317668 kcal Electronic energy + Delta-G solvation = -13128.521051 eV Core-core repulsion = 10618.456783 eV Total energy + Delta-G solvation = -2510.064268 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.045 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.38832 -38.33007 -37.41861 -36.30101 -34.83120 -31.87641 -30.66819 -27.37346 -25.11642 -24.28027 -22.71659 -19.03044 -18.64481 -18.17316 -17.41103 -16.94266 -16.36450 -15.86225 -15.33345 -14.90935 -14.42259 -13.96524 -13.81230 -13.64283 -13.51097 -12.89781 -12.83461 -12.27350 -12.07376 -11.93950 -11.63668 -11.51946 -11.04756 -10.93134 -10.63749 -8.97212 -8.26887 -6.40141 -0.22017 0.62248 0.94043 1.40318 1.42400 1.53067 1.84930 2.38842 2.53207 3.07984 3.58578 3.70053 3.85128 4.07282 4.27426 4.40358 4.67532 4.78618 4.91704 4.97404 5.26626 5.36195 5.43346 5.71347 6.01983 6.06486 6.74144 6.92302 7.30342 8.85577 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.036636 B = 0.006519 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.088455 B = 4293.783815 C = 4759.734995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.972 3.028 4 H -0.278 1.278 5 H -0.281 1.281 6 H -0.255 1.255 7 C -0.544 4.544 8 H 0.072 0.928 9 C 0.023 3.977 10 C 0.104 3.896 11 N -0.484 5.484 12 C 0.154 3.846 13 C -0.157 4.157 14 Cl -0.037 7.037 15 C 0.012 3.988 16 C -0.248 4.248 17 C 0.488 3.512 18 O -0.600 6.600 19 H 0.265 0.735 20 H -0.022 1.022 21 H 0.008 0.992 22 H 0.077 0.923 23 H 0.118 0.882 24 H 0.192 0.808 25 H 0.181 0.819 26 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.409 -15.138 6.449 16.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.795 3.205 4 H -0.204 1.204 5 H -0.206 1.206 6 H -0.178 1.178 7 C -0.583 4.583 8 H 0.090 0.910 9 C -0.014 4.014 10 C -0.016 4.016 11 N -0.192 5.192 12 C 0.024 3.976 13 C -0.189 4.189 14 Cl -0.008 7.008 15 C -0.010 4.010 16 C -0.270 4.270 17 C 0.292 3.708 18 O -0.487 6.487 19 H 0.074 0.926 20 H -0.004 1.004 21 H 0.027 0.973 22 H 0.095 0.905 23 H 0.136 0.864 24 H 0.209 0.791 25 H 0.198 0.802 26 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.459 -14.710 5.911 15.921 hybrid contribution -0.014 1.044 -0.138 1.053 sum 1.445 -13.667 5.774 14.906 Atomic orbital electron populations 1.70106 1.08053 1.28094 1.50933 1.26005 0.95738 1.03634 0.94237 0.85349 0.78886 0.77891 0.78337 1.20374 1.20620 1.17833 1.21467 0.93933 0.91238 1.51622 0.90955 1.19201 0.94310 0.92683 0.95239 1.22218 0.95077 0.79743 1.04542 1.45838 1.45405 1.21250 1.06679 1.22239 0.92509 0.92200 0.90695 1.19957 1.11359 0.98135 0.89415 1.98363 1.92402 1.81856 1.28202 1.21596 0.91600 0.98983 0.88780 1.22135 1.07334 0.96189 1.01326 1.17928 0.82271 0.87768 0.82801 1.90940 1.59022 1.67414 1.31308 0.92592 1.00376 0.97337 0.90453 0.86389 0.79119 0.80152 0.81366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.70 13.29 21.45 0.28 -56.41 15 2 C 0.00 0.13 5.46 84.66 0.46 0.60 15 3 Si 0.97 43.56 29.54 68.60 2.03 45.59 15 4 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 15 6 H -0.25 -10.61 7.11 99.48 0.71 -9.90 15 7 C -0.54 -30.22 9.11 25.60 0.23 -29.99 15 8 H 0.07 3.74 7.74 -2.91 -0.02 3.72 15 9 C 0.02 1.22 5.30 29.85 0.16 1.38 15 10 C 0.10 4.23 5.27 86.38 0.46 4.68 15 11 N -0.48 -17.30 2.59 -650.85 -1.68 -18.98 15 12 C 0.15 4.13 10.04 83.43 0.84 4.97 15 13 C -0.16 -3.57 6.29 22.11 0.14 -3.44 15 14 Cl -0.04 -0.69 28.95 -2.72 -0.08 -0.77 15 15 C 0.01 0.26 9.89 22.33 0.22 0.48 15 16 C -0.25 -7.05 9.99 22.40 0.22 -6.82 15 17 C 0.49 19.06 7.41 84.82 0.63 19.68 15 18 O -0.60 -29.46 16.64 -5.56 -0.09 -29.55 15 19 H 0.27 15.14 8.31 -92.71 -0.77 14.37 15 20 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 15 21 H 0.01 0.45 8.14 -2.39 -0.02 0.43 15 22 H 0.08 3.39 7.39 -2.39 -0.02 3.37 15 23 H 0.12 3.87 8.01 -2.39 -0.02 3.85 15 24 H 0.19 4.11 8.03 -2.91 -0.02 4.08 15 25 H 0.18 2.38 8.06 -2.91 -0.02 2.35 15 26 H 0.17 4.12 8.06 -2.91 -0.02 4.10 15 Total: -1.00 -71.82 252.96 5.00 -66.82 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: 1.18 Total: 1.76 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 3.36 Total: -8.46 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -1.40 Total: -75.39 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.09 Total: -29.55 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -71.82 5.00 -66.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057879298.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.506 kcal (2) G-P(sol) polarization free energy of solvation -71.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds