Wall clock time and date at job start Mon Mar 30 2020 03:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99853 * 2 1 4 4 C 1.50695 * 109.46882 * 179.97438 * 3 2 1 5 5 C 1.36676 * 126.63825 * 270.02147 * 4 3 2 6 6 C 1.47353 * 125.77090 * 0.03940 * 5 4 3 7 7 O 1.21521 * 119.99782 * 359.71649 * 6 5 4 8 8 O 1.34756 * 120.00385 * 179.71552 * 6 5 4 9 9 N 1.34550 * 108.45900 * 179.77809 * 5 4 3 10 10 N 1.28731 * 109.65173 * 0.22791 * 9 5 4 11 11 N 1.35502 * 126.63977 * 90.19238 * 4 3 2 12 12 C 1.37514 * 126.63119 * 359.97438 * 11 4 3 13 13 H 1.07998 * 120.00226 * 0.25115 * 12 11 4 14 14 C 1.39056 * 119.99823 * 180.24951 * 12 11 4 15 15 N 1.31221 * 120.00177 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99790 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46868 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47070 * 119.99804 * 16 14 12 19 19 H 1.48497 * 109.47100 * 240.00278 * 16 14 12 20 20 H 1.09000 * 109.47107 * 60.00181 * 1 2 3 21 21 H 1.08995 * 109.47181 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47304 * 300.00426 * 1 2 3 23 23 H 1.09002 * 109.47084 * 59.99510 * 3 2 1 24 24 H 1.08998 * 109.47051 * 299.99427 * 3 2 1 25 25 H 0.96700 * 117.00284 * 180.02562 * 8 6 5 26 26 H 0.96996 * 119.99656 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 0.0006 5 6 4.3250 1.1218 1.0977 6 6 3.8804 1.1559 2.5021 7 8 2.6975 1.2540 2.7627 8 8 4.7854 1.0783 3.4975 9 7 5.5992 1.0160 0.6785 10 7 5.6329 1.0154 -0.6084 11 7 4.3193 1.1260 -1.0863 12 6 3.9255 1.1610 -2.4034 13 1 2.8782 1.2484 -2.6518 14 6 4.8760 1.0838 -3.4155 15 7 6.1486 0.9770 -3.1137 16 14 4.3412 1.1319 -5.2047 17 1 2.8631 1.2560 -5.2763 18 1 4.9684 2.2977 -5.8776 19 1 4.7669 -0.1189 -5.8824 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.6885 1.8464 0.8900 24 1 1.6886 1.8463 -0.8900 25 1 4.4459 1.1043 4.4026 26 1 6.8115 0.9228 -3.8197 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062295483.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:41 Heat of formation + Delta-G solvation = -74.194937 kcal Electronic energy + Delta-G solvation = -15722.325968 eV Core-core repulsion = 12802.332895 eV Total energy + Delta-G solvation = -2919.993073 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.074 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.56152 -40.64441 -38.63714 -36.93600 -36.30712 -33.85592 -32.09886 -28.77577 -27.83080 -26.41349 -24.72382 -23.25781 -21.30217 -20.18863 -18.59831 -17.74841 -17.52600 -17.32913 -16.58530 -16.51974 -16.25182 -15.62660 -15.46432 -14.48728 -14.01975 -13.83775 -13.51902 -13.14336 -13.04868 -12.49659 -12.39726 -12.12220 -12.03410 -11.95814 -11.65147 -11.50574 -10.84672 -10.52199 -9.80074 -8.87193 -6.83416 0.41823 0.98138 1.35386 1.57698 1.60507 1.88045 2.19490 2.31221 2.53425 2.75007 3.24211 3.92748 4.06798 4.21928 4.39512 4.54406 4.61196 4.64021 4.85093 4.86925 5.07526 5.38851 5.59951 5.76730 6.28887 6.33455 6.86123 7.12533 7.77081 8.12892 Molecular weight = 227.07amu Principal moments of inertia in cm(-1) A = 0.028080 B = 0.010136 C = 0.007636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.909195 B = 2761.881712 C = 3666.031682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.414 6.414 3 C 0.163 3.837 4 C -0.063 4.063 5 C -0.115 4.115 6 C 0.587 3.413 7 O -0.538 6.538 8 O -0.501 6.501 9 N -0.289 5.289 10 N -0.128 5.128 11 N -0.134 5.134 12 C -0.315 4.315 13 H 0.153 0.847 14 C 0.002 3.998 15 N -0.788 5.788 16 Si 1.033 2.967 17 H -0.236 1.236 18 H -0.261 1.261 19 H -0.264 1.264 20 H 0.057 0.943 21 H 0.097 0.903 22 H 0.049 0.951 23 H 0.083 0.917 24 H 0.070 0.930 25 H 0.429 0.571 26 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.198 1.054 -0.031 9.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.333 6.333 3 C 0.085 3.915 4 C -0.201 4.201 5 C -0.262 4.262 6 C 0.431 3.569 7 O -0.428 6.428 8 O -0.313 6.313 9 N -0.152 5.152 10 N -0.106 5.106 11 N 0.099 4.901 12 C -0.453 4.453 13 H 0.170 0.830 14 C -0.216 4.216 15 N -0.414 5.414 16 Si 0.848 3.152 17 H -0.159 1.159 18 H -0.185 1.185 19 H -0.189 1.189 20 H 0.075 0.925 21 H 0.116 0.884 22 H 0.068 0.932 23 H 0.100 0.900 24 H 0.088 0.912 25 H 0.290 0.710 26 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.430 0.752 -0.653 7.497 hybrid contribution -1.035 0.216 0.306 1.101 sum -8.465 0.968 -0.347 8.528 Atomic orbital electron populations 1.22937 0.79080 1.03837 1.01039 1.87939 1.21858 1.27963 1.95578 1.20478 0.83869 0.85267 1.01850 1.21046 0.94843 1.18178 0.86054 1.19778 0.90480 1.23874 0.92082 1.19048 0.82665 0.70985 0.84162 1.90758 1.18137 1.49345 1.84607 1.84649 1.41708 1.85009 1.19948 1.74447 1.19463 1.14778 1.06494 1.82537 0.96632 1.30883 1.00536 1.46664 1.05742 1.30937 1.06716 1.21317 0.97625 1.49322 0.76999 0.82982 1.27271 0.94104 0.92749 1.07478 1.70233 1.02604 1.30370 1.38160 0.84349 0.80649 0.79137 0.71021 1.15882 1.18540 1.18889 0.92471 0.88420 0.93229 0.89961 0.91226 0.70958 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.98 15 2 O -0.41 -16.65 10.69 -148.98 -1.59 -18.24 15 3 C 0.16 6.67 5.56 71.23 0.40 7.06 15 4 C -0.06 -3.19 6.63 41.62 0.28 -2.91 15 5 C -0.11 -5.95 7.02 40.76 0.29 -5.66 15 6 C 0.59 25.51 8.33 70.22 0.59 26.09 15 7 O -0.54 -23.01 15.51 19.77 0.31 -22.71 15 8 O -0.50 -17.68 13.43 -56.67 -0.76 -18.45 15 9 N -0.29 -16.50 12.39 -49.99 -0.62 -17.12 15 10 N -0.13 -7.70 11.67 37.02 0.43 -7.26 15 11 N -0.13 -7.36 3.73 -178.08 -0.67 -8.03 15 12 C -0.31 -15.53 10.01 84.00 0.84 -14.69 15 13 H 0.15 6.50 7.15 -2.91 -0.02 6.48 15 14 C 0.00 0.08 5.50 84.98 0.47 0.55 15 15 N -0.79 -40.82 11.86 21.67 0.26 -40.56 15 16 Si 1.03 33.34 29.55 68.60 2.03 35.36 15 17 H -0.24 -6.81 7.11 99.48 0.71 -6.10 15 18 H -0.26 -8.11 7.11 99.48 0.71 -7.41 15 19 H -0.26 -8.38 7.11 99.48 0.71 -7.67 15 20 H 0.06 1.31 8.14 -2.39 -0.02 1.30 15 21 H 0.10 2.27 8.14 -2.39 -0.02 2.25 15 22 H 0.05 1.24 8.14 -2.39 -0.02 1.22 15 23 H 0.08 3.22 6.43 -2.39 -0.02 3.21 15 24 H 0.07 2.52 7.45 -2.39 -0.02 2.50 15 25 H 0.43 9.11 9.11 -74.06 -0.67 8.44 15 26 H 0.30 13.66 8.30 -92.71 -0.77 12.89 15 Total: -1.00 -71.52 247.09 4.05 -67.47 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.56 Total: 17.11 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: 4.10 Total: 12.42 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -0.60 Total: -72.97 kcal Atomic # 8 Polarization: -57.35 SS G_CDS: -2.05 Total: -59.40 kcal Atomic # 14 Polarization: 33.34 SS G_CDS: 2.03 Total: 35.36 kcal Total: -71.52 4.05 -67.47 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062295483.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.722 kcal (2) G-P(sol) polarization free energy of solvation -71.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds