Wall clock time and date at job start Mon Mar 30 2020 03:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30622 * 1 3 3 Si 1.86799 * 120.00039 * 2 1 4 4 H 1.48501 * 109.47445 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47204 * 299.99999 * 3 2 1 6 6 H 1.48503 * 109.47403 * 59.99525 * 3 2 1 7 7 C 1.40346 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00101 * 180.02562 * 7 2 1 9 9 C 1.39916 * 119.99618 * 0.02562 * 7 2 1 10 10 N 1.32855 * 126.46431 * 0.02562 * 9 7 2 11 11 N 1.28680 * 109.00328 * 179.97438 * 10 9 7 12 12 C 1.31134 * 109.58905 * 359.97438 * 11 10 9 13 13 C 1.50699 * 126.05685 * 180.02562 * 12 11 10 14 14 H 1.08998 * 109.47571 * 194.97513 * 13 12 11 15 15 N 1.46912 * 109.46876 * 314.97486 * 13 12 11 16 16 C 1.52999 * 109.47166 * 74.96935 * 13 12 11 17 17 C 1.50698 * 109.47014 * 175.00015 * 16 13 12 18 18 O 1.20824 * 120.00184 * 0.02562 * 17 16 13 19 19 O 1.34230 * 119.99957 * 180.02562 * 17 16 13 20 20 O 1.34298 * 107.88583 * 359.97438 * 12 11 10 21 21 H 0.97005 * 119.99880 * 0.02562 * 1 2 3 22 22 H 1.00900 * 110.99867 * 59.99837 * 15 13 12 23 23 H 1.00901 * 110.99190 * 183.95459 * 15 13 12 24 24 H 1.08995 * 109.47437 * 295.00149 * 16 13 12 25 25 H 1.09004 * 109.46725 * 55.00709 * 16 13 12 26 26 H 0.96699 * 116.99900 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.7002 1.3464 0.0006 5 1 1.8815 2.3964 -1.2125 6 1 1.8814 2.3965 1.2124 7 6 2.0080 -1.2154 0.0005 8 1 3.0880 -1.2154 0.0010 9 6 1.3084 -2.4271 0.0005 10 7 -0.0117 -2.5767 -0.0004 11 7 -0.2911 -3.8328 -0.0006 12 6 0.8194 -4.5302 -0.0004 13 6 0.9227 -6.0336 -0.0010 14 1 1.9378 -6.3283 0.2649 15 7 -0.0210 -6.5896 0.9781 16 6 0.5851 -6.5674 -1.3946 17 6 0.8069 -8.0576 -1.4290 18 8 1.1946 -8.6337 -0.4402 19 8 0.5737 -8.7449 -2.5581 20 8 1.8485 -3.6672 -0.0006 21 1 -0.4850 0.8401 -0.0004 22 1 -0.9698 -6.3304 0.7533 23 1 0.0743 -7.5920 1.0431 24 1 -0.4579 -6.3499 -1.6242 25 1 1.2275 -6.0874 -2.1329 26 1 0.7299 -9.6988 -2.5315 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083342455.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:24 Heat of formation + Delta-G solvation = -72.169857 kcal Electronic energy + Delta-G solvation = -15265.032468 eV Core-core repulsion = 12345.127209 eV Total energy + Delta-G solvation = -2919.905259 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.074 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.74933 -40.40414 -36.61947 -35.30136 -34.11097 -33.71371 -29.60523 -29.41602 -26.44427 -24.02299 -21.66668 -21.42495 -19.86209 -18.25124 -17.68794 -17.02695 -16.10110 -15.67632 -15.42478 -15.12442 -14.32488 -14.00035 -13.42898 -13.29918 -13.02926 -12.54567 -11.77072 -11.62402 -11.51655 -11.43455 -11.02945 -10.64977 -10.52925 -10.39814 -9.84163 -9.69818 -8.74753 -8.51102 -7.95131 -6.89635 -4.92331 2.08219 2.68796 2.89697 2.97357 3.04200 3.19787 3.71368 4.14327 4.22839 4.82805 4.94892 5.09149 5.22321 5.42867 5.68638 5.72498 5.98911 6.34583 6.69880 6.97282 7.31412 7.36608 7.49421 7.71988 7.86872 8.01502 8.22933 8.48629 10.02837 10.48989 Molecular weight = 227.07amu Principal moments of inertia in cm(-1) A = 0.066017 B = 0.005710 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.029721 B = 4902.764438 C = 4989.906074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.721 5.721 2 C 0.072 3.928 3 Si 0.934 3.066 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.422 4.422 8 H 0.097 0.903 9 C 0.292 3.708 10 N -0.358 5.358 11 N -0.260 5.260 12 C 0.010 3.990 13 C 0.235 3.765 14 H 0.098 0.902 15 N -0.832 5.832 16 C -0.149 4.149 17 C 0.484 3.516 18 O -0.516 6.516 19 O -0.516 6.516 20 O -0.271 6.271 21 H 0.285 0.715 22 H 0.348 0.652 23 H 0.350 0.650 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.780 -8.846 -4.205 9.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.345 5.345 2 C -0.155 4.155 3 Si 0.757 3.243 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.458 4.458 8 H 0.115 0.885 9 C 0.108 3.892 10 N -0.213 5.213 11 N -0.112 5.112 12 C -0.201 4.201 13 C 0.121 3.879 14 H 0.116 0.884 15 N -0.367 5.367 16 C -0.190 4.190 17 C 0.327 3.673 18 O -0.405 6.405 19 O -0.328 6.328 20 O -0.159 6.159 21 H 0.096 0.904 22 H 0.162 0.838 23 H 0.167 0.833 24 H 0.132 0.868 25 H 0.132 0.868 26 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 0.747 -7.729 -3.394 8.475 hybrid contribution 1.332 -0.686 -0.836 1.716 sum 2.079 -8.415 -4.230 9.645 Atomic orbital electron populations 1.69940 1.07344 1.29478 1.27693 1.25965 0.95135 1.01175 0.93232 0.85838 0.80373 0.79234 0.78886 1.18081 1.19391 1.19371 1.18300 0.94854 0.85601 1.47018 0.88497 1.23789 0.89046 0.83023 0.93350 1.75740 1.10095 1.04124 1.31390 1.74019 1.25316 1.00627 1.11248 1.25746 0.82849 0.93367 1.18121 1.18607 0.98628 0.83882 0.86744 0.88390 1.58554 1.09485 1.17173 1.51454 1.22447 1.06592 0.86885 1.03044 1.23632 0.72544 0.91203 0.79931 1.90690 1.42901 1.71331 1.35546 1.84579 1.81340 1.27282 1.39580 1.84671 1.37776 1.17284 1.76152 0.90361 0.83802 0.83300 0.86773 0.86803 0.73379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.20 11.93 55.57 0.66 -18.54 15 2 C 0.07 1.79 5.50 -17.27 -0.10 1.69 15 3 Si 0.93 17.96 29.56 -169.99 -5.03 12.93 15 4 H -0.26 -4.80 7.11 56.52 0.40 -4.40 15 5 H -0.27 -5.02 7.11 56.52 0.40 -4.62 15 6 H -0.27 -5.06 7.11 56.52 0.40 -4.66 15 7 C -0.42 -11.34 9.46 -38.16 -0.36 -11.71 15 8 H 0.10 2.39 7.85 -52.49 -0.41 1.98 15 9 C 0.29 8.41 7.85 -16.48 -0.13 8.28 15 10 N -0.36 -10.66 10.52 30.64 0.32 -10.34 15 11 N -0.26 -6.94 12.11 32.68 0.40 -6.54 15 12 C 0.01 0.24 7.30 -12.58 -0.09 0.15 15 13 C 0.24 4.27 2.98 -68.86 -0.21 4.06 15 14 H 0.10 1.77 7.96 -51.93 -0.41 1.35 15 15 N -0.83 -14.19 9.18 -5.65 -0.05 -14.24 15 16 C -0.15 -2.14 5.44 -27.88 -0.15 -2.29 15 17 C 0.48 6.13 8.14 36.00 0.29 6.42 15 18 O -0.52 -7.56 14.91 -18.75 -0.28 -7.84 15 19 O -0.52 -5.08 13.42 -39.26 -0.53 -5.60 15 20 O -0.27 -7.24 10.90 3.02 0.03 -7.21 15 21 H 0.29 6.71 8.29 -40.82 -0.34 6.38 15 22 H 0.35 5.80 8.87 -39.29 -0.35 5.45 15 23 H 0.35 5.31 6.89 -39.29 -0.27 5.04 15 24 H 0.11 1.60 8.14 -51.93 -0.42 1.17 15 25 H 0.11 1.59 8.14 -51.93 -0.42 1.17 15 26 H 0.41 2.12 9.10 45.56 0.41 2.53 15 LS Contribution 245.77 15.07 3.70 3.70 Total: -1.00 -33.17 245.77 -2.52 -35.68 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -1.01 Total: 11.39 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -0.74 Total: 6.61 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 1.33 Total: -49.67 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.77 Total: -20.65 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -33.17 -2.52 -35.68 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083342455.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.487 kcal (2) G-P(sol) polarization free energy of solvation -33.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds