Wall clock time and date at job start Mon Mar 30 2020 03:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30622 * 1 3 3 Si 1.86799 * 120.00039 * 2 1 4 4 H 1.48501 * 109.47445 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47204 * 299.99999 * 3 2 1 6 6 H 1.48503 * 109.47403 * 59.99525 * 3 2 1 7 7 C 1.40346 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00101 * 180.02562 * 7 2 1 9 9 C 1.39916 * 119.99618 * 0.02562 * 7 2 1 10 10 N 1.32855 * 126.46431 * 0.02562 * 9 7 2 11 11 N 1.28680 * 109.00328 * 179.97438 * 10 9 7 12 12 C 1.31134 * 109.58905 * 359.97438 * 11 10 9 13 13 C 1.50699 * 126.05685 * 180.02562 * 12 11 10 14 14 H 1.08998 * 109.47571 * 194.97513 * 13 12 11 15 15 N 1.46912 * 109.46876 * 314.97486 * 13 12 11 16 16 C 1.52999 * 109.47166 * 74.96935 * 13 12 11 17 17 C 1.50698 * 109.47014 * 175.00015 * 16 13 12 18 18 O 1.20824 * 120.00184 * 0.02562 * 17 16 13 19 19 O 1.34230 * 119.99957 * 180.02562 * 17 16 13 20 20 O 1.34298 * 107.88583 * 359.97438 * 12 11 10 21 21 H 0.97005 * 119.99880 * 0.02562 * 1 2 3 22 22 H 1.00900 * 110.99867 * 59.99837 * 15 13 12 23 23 H 1.00901 * 110.99190 * 183.95459 * 15 13 12 24 24 H 1.08995 * 109.47437 * 295.00149 * 16 13 12 25 25 H 1.09004 * 109.46725 * 55.00709 * 16 13 12 26 26 H 0.96699 * 116.99900 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.7002 1.3464 0.0006 5 1 1.8815 2.3964 -1.2125 6 1 1.8814 2.3965 1.2124 7 6 2.0080 -1.2154 0.0005 8 1 3.0880 -1.2154 0.0010 9 6 1.3084 -2.4271 0.0005 10 7 -0.0117 -2.5767 -0.0004 11 7 -0.2911 -3.8328 -0.0006 12 6 0.8194 -4.5302 -0.0004 13 6 0.9227 -6.0336 -0.0010 14 1 1.9378 -6.3283 0.2649 15 7 -0.0210 -6.5896 0.9781 16 6 0.5851 -6.5674 -1.3946 17 6 0.8069 -8.0576 -1.4290 18 8 1.1946 -8.6337 -0.4402 19 8 0.5737 -8.7449 -2.5581 20 8 1.8485 -3.6672 -0.0006 21 1 -0.4850 0.8401 -0.0004 22 1 -0.9698 -6.3304 0.7533 23 1 0.0743 -7.5920 1.0431 24 1 -0.4579 -6.3499 -1.6242 25 1 1.2275 -6.0874 -2.1329 26 1 0.7299 -9.6988 -2.5315 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083342455.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:24 Heat of formation + Delta-G solvation = -103.683785 kcal Electronic energy + Delta-G solvation = -15266.399015 eV Core-core repulsion = 12345.127209 eV Total energy + Delta-G solvation = -2921.271805 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.074 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.78193 -41.43826 -37.69671 -36.61173 -36.12829 -35.65973 -31.52513 -30.73111 -28.32272 -25.65338 -23.63781 -22.84689 -21.47636 -19.68112 -19.24540 -18.31414 -17.52491 -17.34397 -17.10083 -16.59664 -15.95002 -15.56480 -15.09647 -14.79574 -14.20139 -13.80922 -13.52995 -13.16019 -13.04622 -12.71793 -12.57073 -12.48051 -12.02305 -11.88037 -11.72774 -11.48316 -10.79950 -10.07642 -9.79814 -8.77396 -6.98169 0.89935 1.07560 1.39464 1.52199 1.60772 1.81823 2.12029 2.23006 2.51134 3.06723 3.53310 3.59311 3.92222 3.93507 4.38250 4.42600 4.63823 4.69055 5.04582 5.31598 5.48825 5.56038 5.99907 6.04951 6.19751 6.49135 6.52971 6.93225 8.19058 8.43551 Molecular weight = 227.07amu Principal moments of inertia in cm(-1) A = 0.066017 B = 0.005710 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.029721 B = 4902.764438 C = 4989.906074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.026 3.974 3 Si 1.023 2.977 4 H -0.246 1.246 5 H -0.258 1.258 6 H -0.260 1.260 7 C -0.446 4.446 8 H 0.111 0.889 9 C 0.260 3.740 10 N -0.404 5.404 11 N -0.287 5.287 12 C 0.032 3.968 13 C 0.237 3.763 14 H 0.102 0.898 15 N -0.837 5.837 16 C -0.143 4.143 17 C 0.501 3.499 18 O -0.537 6.537 19 O -0.506 6.506 20 O -0.283 6.283 21 H 0.296 0.704 22 H 0.350 0.650 23 H 0.364 0.636 24 H 0.119 0.881 25 H 0.119 0.881 26 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.732 -8.983 -4.788 10.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.197 4.197 3 Si 0.839 3.161 4 H -0.169 1.169 5 H -0.182 1.182 6 H -0.185 1.185 7 C -0.482 4.482 8 H 0.129 0.871 9 C 0.076 3.924 10 N -0.258 5.258 11 N -0.136 5.136 12 C -0.181 4.181 13 C 0.123 3.877 14 H 0.120 0.880 15 N -0.374 5.374 16 C -0.183 4.183 17 C 0.344 3.656 18 O -0.427 6.427 19 O -0.320 6.320 20 O -0.172 6.172 21 H 0.107 0.893 22 H 0.164 0.836 23 H 0.183 0.817 24 H 0.137 0.863 25 H 0.137 0.863 26 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 1.659 -7.930 -3.996 9.034 hybrid contribution 1.014 -0.804 -0.679 1.461 sum 2.673 -8.735 -4.675 10.261 Atomic orbital electron populations 1.70025 1.09520 1.31437 1.27873 1.27242 0.95970 1.04832 0.91611 0.84579 0.78997 0.73117 0.79411 1.16896 1.18174 1.18462 1.18927 0.95834 0.86038 1.47361 0.87089 1.24344 0.89374 0.84081 0.94592 1.75648 1.10843 1.05539 1.33797 1.73908 1.26293 1.00133 1.13302 1.26954 0.81734 0.95327 1.14071 1.18756 0.99260 0.80251 0.89441 0.88045 1.58460 1.09368 1.18171 1.51416 1.22151 1.07035 0.88735 1.00413 1.22957 0.72086 0.90315 0.80218 1.90698 1.44019 1.71553 1.36443 1.84501 1.80573 1.29247 1.37713 1.84676 1.38666 1.17348 1.76464 0.89262 0.83572 0.81735 0.86269 0.86293 0.70555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -41.33 11.93 21.90 0.26 -41.07 15 2 C 0.03 1.30 5.50 85.39 0.47 1.77 15 3 Si 1.02 35.86 29.56 68.60 2.03 37.89 15 4 H -0.25 -8.10 7.11 99.48 0.71 -7.40 15 5 H -0.26 -8.51 7.11 99.48 0.71 -7.80 15 6 H -0.26 -8.72 7.11 99.48 0.71 -8.01 15 7 C -0.45 -24.28 9.46 23.19 0.22 -24.07 15 8 H 0.11 5.48 7.85 -2.91 -0.02 5.46 15 9 C 0.26 15.40 7.85 84.94 0.67 16.07 15 10 N -0.40 -24.81 10.52 -169.75 -1.79 -26.59 15 11 N -0.29 -15.70 12.11 -164.71 -1.99 -17.70 15 12 C 0.03 1.57 7.30 88.21 0.64 2.22 15 13 C 0.24 8.40 2.98 44.17 0.13 8.53 15 14 H 0.10 3.55 7.96 -2.39 -0.02 3.53 15 15 N -0.84 -27.81 9.18 -171.78 -1.58 -29.39 15 16 C -0.14 -3.89 5.44 29.85 0.16 -3.73 15 17 C 0.50 11.48 8.14 71.24 0.58 12.06 15 18 O -0.54 -14.52 14.91 21.97 0.33 -14.19 15 19 O -0.51 -8.35 13.42 -51.42 -0.69 -9.04 15 20 O -0.28 -15.42 10.90 -12.10 -0.13 -15.55 15 21 H 0.30 14.06 8.29 -92.70 -0.77 13.29 15 22 H 0.35 11.46 8.87 -89.69 -0.80 10.67 15 23 H 0.36 10.49 6.89 -89.69 -0.62 9.87 15 24 H 0.12 3.17 8.14 -2.39 -0.02 3.15 15 25 H 0.12 3.15 8.14 -2.39 -0.02 3.13 15 26 H 0.43 2.94 9.10 -74.06 -0.67 2.27 15 Total: -1.00 -73.13 245.77 -1.51 -74.64 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: -0.82 Total: 28.16 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 2.87 Total: 12.84 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -5.10 Total: -114.75 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -0.49 Total: -38.78 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 2.03 Total: 37.89 kcal Total: -73.13 -1.51 -74.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083342455.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.044 kcal (2) G-P(sol) polarization free energy of solvation -73.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds