Wall clock time and date at job start Mon Mar 30 2020 03:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86793 * 119.99685 * 2 1 4 4 H 1.48502 * 109.47133 * 239.99667 * 3 2 1 5 5 H 1.48498 * 109.47831 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47006 * 120.00268 * 3 2 1 7 7 C 1.40339 * 119.99584 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99558 * 180.02562 * 7 2 1 9 9 C 1.39901 * 120.00516 * 359.97438 * 7 2 1 10 10 N 1.32854 * 126.46851 * 0.02914 * 9 7 2 11 11 N 1.28683 * 109.00861 * 179.70498 * 10 9 7 12 12 C 1.31127 * 109.59046 * 0.44560 * 11 10 9 13 13 C 1.50698 * 126.05721 * 179.81964 * 12 11 10 14 14 C 1.53000 * 109.46984 * 89.69425 * 13 12 11 15 15 H 1.09002 * 109.47398 * 54.99888 * 14 13 12 16 16 N 1.46901 * 109.46769 * 294.99593 * 14 13 12 17 17 C 1.50699 * 109.47083 * 174.99834 * 14 13 12 18 18 O 1.20827 * 119.99941 * 99.99949 * 17 14 13 19 19 O 1.34226 * 120.00241 * 279.99575 * 17 14 13 20 20 O 1.34305 * 107.88158 * 359.55941 * 12 11 10 21 21 H 0.97001 * 120.00115 * 0.02562 * 1 2 3 22 22 H 1.08990 * 109.47311 * 329.69335 * 13 12 11 23 23 H 1.09001 * 109.47069 * 209.69100 * 13 12 11 24 24 H 1.00898 * 111.00245 * 300.00105 * 16 14 13 25 25 H 1.00904 * 111.00313 * 63.95922 * 16 14 13 26 26 H 0.96697 * 116.99866 * 179.97438 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.0940 1.6964 -1.2125 5 1 1.2753 2.7465 -0.0006 6 1 3.0940 1.6964 1.2125 7 6 2.0079 -1.2154 -0.0005 8 1 3.0879 -1.2154 -0.0001 9 6 1.3084 -2.4270 -0.0005 10 7 -0.0116 -2.5767 -0.0006 11 7 -0.2910 -3.8328 -0.0069 12 6 0.8194 -4.5302 -0.0014 13 6 0.9226 -6.0337 -0.0019 14 6 0.9576 -6.5419 -1.4446 15 1 1.7677 -6.0505 -1.9835 16 7 -0.3213 -6.2399 -2.1012 17 6 1.1840 -8.0318 -1.4470 18 8 0.2512 -8.7844 -1.5997 19 8 2.4220 -8.5228 -1.2795 20 8 1.8484 -3.6672 -0.0010 21 1 -0.4850 0.8400 -0.0004 22 1 0.0596 -6.4573 0.5117 23 1 1.8354 -6.3354 0.5118 24 1 -1.0887 -6.6846 -1.6201 25 1 -0.4662 -5.2437 -2.1700 26 1 2.5174 -9.4850 -1.2880 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083342456.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:08 Heat of formation + Delta-G solvation = -73.336866 kcal Electronic energy + Delta-G solvation = -15280.243241 eV Core-core repulsion = 12360.287377 eV Total energy + Delta-G solvation = -2919.955864 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.074 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.86387 -40.24788 -36.33728 -35.43020 -34.20256 -33.85244 -30.43730 -28.57840 -26.45309 -24.41677 -21.68613 -21.07015 -20.27372 -18.28799 -17.83831 -17.02459 -15.86702 -15.65113 -15.21469 -14.82256 -14.61650 -14.07457 -13.57549 -13.40712 -13.14174 -12.47149 -11.87037 -11.56605 -11.49924 -11.44438 -11.15580 -10.65194 -10.51801 -10.45851 -9.96851 -9.74341 -8.85553 -8.73095 -8.02967 -6.96910 -5.01538 2.19027 2.67266 2.91646 2.93548 2.96567 3.13680 3.65604 4.08329 4.16577 4.81321 4.98911 5.07427 5.11166 5.29598 5.62333 5.78379 6.04188 6.47034 6.60428 6.88606 7.12565 7.23883 7.34504 7.61008 7.92060 7.92761 8.13413 8.39740 9.95092 10.37089 Molecular weight = 227.07amu Principal moments of inertia in cm(-1) A = 0.064402 B = 0.005869 C = 0.005601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.664451 B = 4769.282018 C = 4997.633663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.719 5.719 2 C 0.071 3.929 3 Si 0.936 3.064 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.420 4.420 8 H 0.097 0.903 9 C 0.292 3.708 10 N -0.358 5.358 11 N -0.265 5.265 12 C -0.005 4.005 13 C -0.021 4.021 14 C 0.106 3.894 15 H 0.117 0.883 16 N -0.826 5.826 17 C 0.490 3.510 18 O -0.507 6.507 19 O -0.515 6.515 20 O -0.270 6.270 21 H 0.287 0.713 22 H 0.093 0.907 23 H 0.088 0.912 24 H 0.350 0.650 25 H 0.366 0.634 26 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.689 -7.062 -0.925 8.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.343 5.343 2 C -0.156 4.156 3 Si 0.758 3.242 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.455 4.455 8 H 0.115 0.885 9 C 0.109 3.891 10 N -0.213 5.213 11 N -0.118 5.118 12 C -0.215 4.215 13 C -0.062 4.062 14 C -0.009 4.009 15 H 0.135 0.865 16 N -0.360 5.360 17 C 0.332 3.668 18 O -0.394 6.394 19 O -0.327 6.327 20 O -0.159 6.159 21 H 0.099 0.901 22 H 0.112 0.888 23 H 0.107 0.893 24 H 0.164 0.836 25 H 0.183 0.817 26 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 3.221 -6.790 -1.605 7.684 hybrid contribution 1.472 0.257 0.954 1.772 sum 4.692 -6.533 -0.651 8.070 Atomic orbital electron populations 1.69914 1.07363 1.29864 1.27115 1.25978 0.95165 1.01235 0.93219 0.85918 0.79632 0.78416 0.80242 1.18476 1.19713 1.18521 1.18257 0.94885 0.85644 1.46748 0.88484 1.23769 0.88984 0.83099 0.93285 1.75757 1.10113 1.03957 1.31480 1.74118 1.25280 1.00838 1.11555 1.25913 0.82949 0.93649 1.19030 1.20148 1.04487 0.85610 0.95988 1.20991 0.96802 0.87418 0.95693 0.86534 1.58727 1.02431 1.18425 1.56453 1.23348 0.79884 0.92137 0.71480 1.90687 1.43558 1.60395 1.44742 1.84560 1.32793 1.30688 1.84612 1.84694 1.37731 1.17258 1.76211 0.90127 0.88834 0.89317 0.83596 0.81705 0.73373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.70 11.93 55.57 0.66 -18.04 15 2 C 0.07 1.73 5.50 -17.27 -0.10 1.64 15 3 Si 0.94 17.51 29.56 -169.99 -5.03 12.48 15 4 H -0.26 -4.76 7.11 56.52 0.40 -4.36 15 5 H -0.27 -4.93 7.11 56.52 0.40 -4.53 15 6 H -0.26 -4.77 7.11 56.52 0.40 -4.37 15 7 C -0.42 -10.95 9.46 -38.17 -0.36 -11.31 15 8 H 0.10 2.31 7.85 -52.49 -0.41 1.90 15 9 C 0.29 8.11 7.85 -16.49 -0.13 7.98 15 10 N -0.36 -10.29 10.52 30.64 0.32 -9.96 15 11 N -0.27 -6.80 11.79 32.68 0.39 -6.41 15 12 C -0.01 -0.12 7.03 -12.58 -0.09 -0.21 15 13 C -0.02 -0.35 5.47 -27.88 -0.15 -0.51 15 14 C 0.11 1.63 3.31 -68.86 -0.23 1.41 15 15 H 0.12 1.82 8.14 -51.93 -0.42 1.40 15 16 N -0.83 -13.54 8.95 -5.65 -0.05 -13.59 15 17 C 0.49 6.90 7.58 36.01 0.27 7.17 15 18 O -0.51 -8.29 17.01 -18.75 -0.32 -8.60 15 19 O -0.52 -5.62 13.42 -39.25 -0.53 -6.15 15 20 O -0.27 -6.89 10.90 2.98 0.03 -6.86 15 21 H 0.29 6.65 8.29 -40.82 -0.34 6.32 15 22 H 0.09 1.46 8.14 -51.93 -0.42 1.04 15 23 H 0.09 1.32 8.14 -51.93 -0.42 0.89 15 24 H 0.35 5.53 8.58 -39.29 -0.34 5.20 15 25 H 0.37 6.66 7.93 -39.29 -0.31 6.35 15 26 H 0.41 2.49 9.10 45.56 0.41 2.90 15 LS Contribution 247.79 15.07 3.73 3.73 Total: -1.00 -31.88 247.79 -2.61 -34.50 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -1.05 Total: 12.73 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -0.78 Total: 6.17 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 1.32 Total: -48.00 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.81 Total: -21.61 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.88 -2.61 -34.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083342456.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.840 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds