Wall clock time and date at job start Mon Mar 30 2020 03:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86793 * 119.99685 * 2 1 4 4 H 1.48502 * 109.47133 * 239.99667 * 3 2 1 5 5 H 1.48498 * 109.47831 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47006 * 120.00268 * 3 2 1 7 7 C 1.40339 * 119.99584 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99558 * 180.02562 * 7 2 1 9 9 C 1.39901 * 120.00516 * 359.97438 * 7 2 1 10 10 N 1.32854 * 126.46851 * 0.02914 * 9 7 2 11 11 N 1.28683 * 109.00861 * 179.70498 * 10 9 7 12 12 C 1.31127 * 109.59046 * 0.44560 * 11 10 9 13 13 C 1.50698 * 126.05721 * 179.81964 * 12 11 10 14 14 C 1.53000 * 109.46984 * 89.69425 * 13 12 11 15 15 H 1.09002 * 109.47398 * 54.99888 * 14 13 12 16 16 N 1.46901 * 109.46769 * 294.99593 * 14 13 12 17 17 C 1.50699 * 109.47083 * 174.99834 * 14 13 12 18 18 O 1.20827 * 119.99941 * 99.99949 * 17 14 13 19 19 O 1.34226 * 120.00241 * 279.99575 * 17 14 13 20 20 O 1.34305 * 107.88158 * 359.55941 * 12 11 10 21 21 H 0.97001 * 120.00115 * 0.02562 * 1 2 3 22 22 H 1.08990 * 109.47311 * 329.69335 * 13 12 11 23 23 H 1.09001 * 109.47069 * 209.69100 * 13 12 11 24 24 H 1.00898 * 111.00245 * 300.00105 * 16 14 13 25 25 H 1.00904 * 111.00313 * 63.95922 * 16 14 13 26 26 H 0.96697 * 116.99866 * 179.97438 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.0940 1.6964 -1.2125 5 1 1.2753 2.7465 -0.0006 6 1 3.0940 1.6964 1.2125 7 6 2.0079 -1.2154 -0.0005 8 1 3.0879 -1.2154 -0.0001 9 6 1.3084 -2.4270 -0.0005 10 7 -0.0116 -2.5767 -0.0006 11 7 -0.2910 -3.8328 -0.0069 12 6 0.8194 -4.5302 -0.0014 13 6 0.9226 -6.0337 -0.0019 14 6 0.9576 -6.5419 -1.4446 15 1 1.7677 -6.0505 -1.9835 16 7 -0.3213 -6.2399 -2.1012 17 6 1.1840 -8.0318 -1.4470 18 8 0.2512 -8.7844 -1.5997 19 8 2.4220 -8.5228 -1.2795 20 8 1.8484 -3.6672 -0.0010 21 1 -0.4850 0.8400 -0.0004 22 1 0.0596 -6.4573 0.5117 23 1 1.8354 -6.3354 0.5118 24 1 -1.0887 -6.6846 -1.6201 25 1 -0.4662 -5.2437 -2.1700 26 1 2.5174 -9.4850 -1.2880 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083342456.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:07 Heat of formation + Delta-G solvation = -103.466892 kcal Electronic energy + Delta-G solvation = -15281.549777 eV Core-core repulsion = 12360.287377 eV Total energy + Delta-G solvation = -2921.262400 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.074 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.81436 -41.37051 -37.43114 -36.73892 -36.13828 -35.73613 -32.16232 -30.21118 -28.09456 -25.97463 -23.66944 -22.62158 -21.68461 -19.77784 -19.36177 -18.24834 -17.59658 -17.38309 -16.77994 -16.35052 -15.91655 -15.40787 -15.29295 -14.94991 -14.44024 -13.78454 -13.55598 -13.11394 -13.02957 -12.77648 -12.56275 -12.48811 -12.08800 -11.93609 -11.65711 -11.45493 -10.82231 -10.19702 -9.84979 -8.78666 -7.00060 0.83282 1.12298 1.39185 1.54155 1.57541 1.85681 2.09146 2.21659 2.44746 3.05530 3.47874 3.64673 3.76248 4.07990 4.35192 4.37569 4.60515 4.68568 5.02592 5.27315 5.50706 5.55958 5.85931 5.98768 6.18015 6.24788 6.47366 6.98337 8.16780 8.40535 Molecular weight = 227.07amu Principal moments of inertia in cm(-1) A = 0.064402 B = 0.005869 C = 0.005601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.664451 B = 4769.282018 C = 4997.633663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.027 3.973 3 Si 1.021 2.979 4 H -0.250 1.250 5 H -0.263 1.263 6 H -0.251 1.251 7 C -0.446 4.446 8 H 0.112 0.888 9 C 0.261 3.739 10 N -0.404 5.404 11 N -0.296 5.296 12 C 0.023 3.977 13 C -0.018 4.018 14 C 0.108 3.892 15 H 0.116 0.884 16 N -0.828 5.828 17 C 0.506 3.494 18 O -0.530 6.530 19 O -0.504 6.504 20 O -0.280 6.280 21 H 0.296 0.704 22 H 0.107 0.893 23 H 0.115 0.885 24 H 0.353 0.647 25 H 0.354 0.646 26 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.292 -7.319 -0.867 9.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.196 4.196 3 Si 0.837 3.163 4 H -0.174 1.174 5 H -0.187 1.187 6 H -0.174 1.174 7 C -0.481 4.481 8 H 0.130 0.870 9 C 0.078 3.922 10 N -0.258 5.258 11 N -0.145 5.145 12 C -0.190 4.190 13 C -0.059 4.059 14 C -0.007 4.007 15 H 0.134 0.866 16 N -0.361 5.361 17 C 0.348 3.652 18 O -0.419 6.419 19 O -0.318 6.318 20 O -0.169 6.169 21 H 0.108 0.892 22 H 0.126 0.874 23 H 0.133 0.867 24 H 0.167 0.833 25 H 0.169 0.831 26 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 4.808 -7.106 -1.544 8.717 hybrid contribution 1.014 0.155 0.934 1.387 sum 5.821 -6.951 -0.610 9.087 Atomic orbital electron populations 1.70010 1.09498 1.31593 1.27664 1.27221 0.95941 1.04830 0.91613 0.84691 0.78141 0.72658 0.80794 1.17389 1.18715 1.17446 1.18881 0.95921 0.86088 1.47190 0.86958 1.24284 0.89284 0.84178 0.94477 1.75673 1.10896 1.05434 1.33810 1.74020 1.26430 1.00363 1.13722 1.27074 0.81769 0.95576 1.14567 1.20423 1.06491 0.81392 0.97561 1.20903 0.96327 0.89018 0.94473 0.86593 1.58723 1.03117 1.17439 1.56779 1.22753 0.80425 0.91015 0.71033 1.90697 1.44565 1.60670 1.45974 1.84491 1.30580 1.33042 1.83671 1.84699 1.38536 1.17208 1.76426 0.89249 0.87432 0.86668 0.83254 0.83084 0.70488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -40.47 11.93 21.90 0.26 -40.21 15 2 C 0.03 1.31 5.50 85.38 0.47 1.78 15 3 Si 1.02 34.96 29.56 68.60 2.03 36.98 15 4 H -0.25 -8.11 7.11 99.48 0.71 -7.40 15 5 H -0.26 -8.51 7.11 99.48 0.71 -7.80 15 6 H -0.25 -8.13 7.11 99.48 0.71 -7.42 15 7 C -0.45 -23.48 9.46 23.18 0.22 -23.26 15 8 H 0.11 5.32 7.85 -2.91 -0.02 5.30 15 9 C 0.26 14.88 7.85 84.94 0.67 15.54 15 10 N -0.40 -23.95 10.52 -169.76 -1.79 -25.73 15 11 N -0.30 -15.49 11.79 -164.71 -1.94 -17.43 15 12 C 0.02 1.02 7.03 88.21 0.62 1.64 15 13 C -0.02 -0.57 5.47 29.85 0.16 -0.40 15 14 C 0.11 3.14 3.31 44.17 0.15 3.29 15 15 H 0.12 3.44 8.14 -2.39 -0.02 3.42 15 16 N -0.83 -26.62 8.95 -171.80 -1.54 -28.16 15 17 C 0.51 12.93 7.58 71.24 0.54 13.47 15 18 O -0.53 -16.16 17.01 21.96 0.37 -15.79 15 19 O -0.50 -9.23 13.42 -51.38 -0.69 -9.92 15 20 O -0.28 -14.34 10.90 -12.23 -0.13 -14.47 15 21 H 0.30 13.91 8.29 -92.71 -0.77 13.14 15 22 H 0.11 3.14 8.14 -2.39 -0.02 3.12 15 23 H 0.12 3.07 8.14 -2.39 -0.02 3.05 15 24 H 0.35 10.94 8.58 -89.70 -0.77 10.17 15 25 H 0.35 13.01 7.93 -89.69 -0.71 12.30 15 26 H 0.43 3.61 9.10 -74.06 -0.67 2.93 15 Total: -1.00 -70.37 247.79 -1.48 -71.86 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: -0.88 Total: 30.81 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 2.83 Total: 12.06 kcal Atomic # 7 Polarization: -106.53 SS G_CDS: -5.00 Total: -111.53 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -0.45 Total: -40.18 kcal Atomic # 14 Polarization: 34.96 SS G_CDS: 2.03 Total: 36.98 kcal Total: -70.37 -1.48 -71.86 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083342456.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.610 kcal (2) G-P(sol) polarization free energy of solvation -70.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds