Wall clock time and date at job start Mon Mar 30 2020 03:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30537 * 1 3 3 Si 1.86801 * 120.00116 * 2 1 4 4 H 1.48500 * 109.46762 * 239.99846 * 3 2 1 5 5 H 1.48496 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47284 * 120.00054 * 3 2 1 7 7 C 1.40325 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99785 * 180.02562 * 7 2 1 9 9 C 1.41709 * 120.00244 * 0.02562 * 7 2 1 10 10 O 1.21882 * 119.99857 * 359.72608 * 9 7 2 11 11 C 1.47281 * 120.00343 * 180.02562 * 9 7 2 12 12 C 1.39967 * 120.18701 * 5.51980 * 11 9 7 13 13 C 1.37682 * 119.92447 * 179.97438 * 12 11 9 14 14 F 1.35092 * 119.84218 * 180.02562 * 13 12 11 15 15 C 1.39383 * 120.30976 * 359.97438 * 13 12 11 16 16 F 1.35105 * 119.80479 * 180.02562 * 15 13 12 17 17 C 1.38197 * 120.38952 * 0.02562 * 15 13 12 18 18 C 1.38853 * 120.06364 * 359.75250 * 17 15 13 19 19 N 1.38750 * 120.15548 * 180.27442 * 18 17 15 20 20 H 0.97007 * 119.99830 * 0.02562 * 1 2 3 21 21 H 1.07999 * 120.03386 * 359.95754 * 12 11 9 22 22 H 1.07999 * 119.96987 * 180.02562 * 17 15 13 23 23 H 0.97008 * 119.99394 * 204.50738 * 19 18 17 24 24 H 0.96992 * 120.00501 * 24.50743 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 3.0932 1.6963 -1.2125 5 1 1.2745 2.7465 -0.0006 6 1 3.0932 1.6964 1.2125 7 6 2.0069 -1.2153 0.0005 8 1 3.0869 -1.2153 0.0010 9 6 1.2984 -2.4425 0.0005 10 8 0.0796 -2.4425 0.0051 11 6 2.0347 -3.7181 0.0017 12 6 3.4294 -3.7255 0.1191 13 6 4.1123 -4.9210 0.1201 14 9 5.4584 -4.9263 0.2341 15 6 3.4211 -6.1260 0.0052 16 9 4.1014 -7.2932 0.0078 17 6 2.0441 -6.1337 -0.1115 18 6 1.3391 -4.9374 -0.1097 19 7 -0.0439 -4.9432 -0.2210 20 1 -0.4850 0.8401 -0.0004 21 1 3.9693 -2.7944 0.2086 22 1 1.5154 -7.0712 -0.1998 23 1 -0.5056 -4.1647 -0.5700 24 1 -0.5490 -5.7255 0.0502 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136685077.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:44 Heat of formation + Delta-G solvation = -109.324304 kcal Electronic energy + Delta-G solvation = -15053.060807 eV Core-core repulsion = 11988.164144 eV Total energy + Delta-G solvation = -3064.896663 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.050 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.89384 -47.94049 -38.85417 -36.14054 -33.72327 -32.69794 -30.41816 -27.92206 -26.63532 -23.21655 -21.96520 -19.99380 -17.54378 -17.28889 -16.64013 -16.20957 -15.72549 -15.41684 -14.98998 -14.40885 -14.36011 -13.76150 -13.49747 -13.17381 -12.73986 -12.39444 -12.15371 -11.50063 -11.42663 -10.98926 -10.92067 -10.47555 -10.39012 -9.61750 -9.09856 -8.31789 -7.64348 -6.96509 -6.45355 -5.05394 1.42070 1.80866 2.99920 3.06585 3.08649 3.72848 3.91403 4.29716 4.43145 4.65288 4.96377 5.24543 5.59348 5.60850 5.70019 6.19102 6.32906 6.47929 6.68716 6.86264 7.10553 7.33740 7.86988 8.10749 8.44213 8.64265 8.76541 10.13715 10.35136 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.034589 B = 0.008658 C = 0.006948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.300130 B = 3233.109002 C = 4029.030811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.731 5.731 2 C 0.080 3.920 3 Si 0.908 3.092 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.511 4.511 8 H 0.076 0.924 9 C 0.396 3.604 10 O -0.544 6.544 11 C -0.161 4.161 12 C -0.057 4.057 13 C -0.012 4.012 14 F -0.145 7.145 15 C 0.102 3.898 16 F -0.140 7.140 17 C -0.228 4.228 18 C 0.261 3.739 19 N -0.853 5.853 20 H 0.276 0.724 21 H 0.150 0.850 22 H 0.134 0.866 23 H 0.419 0.581 24 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.153 -5.692 -0.334 6.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.144 4.144 3 Si 0.731 3.269 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.542 4.542 8 H 0.094 0.906 9 C 0.294 3.706 10 O -0.436 6.436 11 C -0.167 4.167 12 C -0.077 4.077 13 C -0.033 4.033 14 F -0.124 7.124 15 C 0.081 3.919 16 F -0.119 7.119 17 C -0.252 4.252 18 C 0.151 3.849 19 N -0.400 5.400 20 H 0.087 0.913 21 H 0.167 0.833 22 H 0.152 0.848 23 H 0.261 0.739 24 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 2.451 -5.619 -0.348 6.140 hybrid contribution 0.686 0.384 0.049 0.787 sum 3.137 -5.235 -0.299 6.110 Atomic orbital electron populations 1.69928 1.07540 1.28468 1.29943 1.25998 0.94702 1.01110 0.92609 0.86396 0.80124 0.80277 0.80055 1.18775 1.20206 1.18766 1.20884 0.95070 0.91530 1.46674 0.90626 1.17779 0.88209 0.85370 0.79227 1.90297 1.14857 1.87436 1.50968 1.21491 0.93215 0.96831 1.05178 1.21237 0.94035 0.96187 0.96230 1.17397 0.77332 0.93331 1.15284 1.91424 1.29009 1.97311 1.94688 1.17449 0.89867 0.79795 1.04786 1.91447 1.80112 1.46196 1.94147 1.20389 0.91422 0.98536 1.14841 1.17755 0.85392 0.91509 0.90289 1.42911 1.03079 1.22230 1.71746 0.91277 0.83265 0.84838 0.73949 0.78773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -19.66 11.73 55.57 0.65 -19.01 14 2 C 0.08 2.03 5.50 -17.32 -0.10 1.93 14 3 Si 0.91 18.38 29.56 -169.99 -5.03 13.35 14 4 H -0.26 -5.23 7.11 56.52 0.40 -4.82 14 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 14 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 14 7 C -0.51 -13.19 8.84 -37.47 -0.33 -13.52 14 8 H 0.08 1.78 6.05 -52.49 -0.32 1.46 14 9 C 0.40 10.34 6.88 -34.58 -0.24 10.10 14 10 O -0.54 -15.33 12.36 5.03 0.06 -15.27 14 11 C -0.16 -3.58 5.90 -104.60 -0.62 -4.19 14 12 C -0.06 -1.15 9.39 -39.14 -0.37 -1.52 14 13 C -0.01 -0.22 7.30 -39.36 -0.29 -0.51 14 14 F -0.15 -2.73 17.17 2.25 0.04 -2.70 14 15 C 0.10 1.85 7.31 -39.17 -0.29 1.57 14 16 F -0.14 -2.46 17.17 2.25 0.04 -2.42 14 17 C -0.23 -3.93 9.89 -39.37 -0.39 -4.32 14 18 C 0.26 5.11 6.77 -83.53 -0.57 4.55 14 19 N -0.85 -15.43 8.49 32.60 0.28 -15.15 14 20 H 0.28 6.70 8.29 -40.82 -0.34 6.36 14 21 H 0.15 2.87 6.23 -52.49 -0.33 2.54 14 22 H 0.13 1.92 8.06 -52.49 -0.42 1.49 14 23 H 0.42 8.62 6.10 -40.82 -0.25 8.37 14 24 H 0.39 5.49 8.90 -40.82 -0.36 5.13 14 LS Contribution 229.21 15.07 3.45 3.45 Total: -1.00 -28.52 229.21 -4.49 -33.02 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -0.81 Total: 10.63 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -3.18 Total: -5.91 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.93 Total: -34.16 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.06 Total: -15.27 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.08 Total: -5.12 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -28.52 -4.49 -33.02 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136685077.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.309 kcal (2) G-P(sol) polarization free energy of solvation -28.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds