Wall clock time and date at job start Mon Mar 30 2020 03:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30537 * 1 3 3 Si 1.86801 * 120.00116 * 2 1 4 4 H 1.48500 * 109.46762 * 239.99846 * 3 2 1 5 5 H 1.48496 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47284 * 120.00054 * 3 2 1 7 7 C 1.40325 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99785 * 180.02562 * 7 2 1 9 9 C 1.41709 * 120.00244 * 0.02562 * 7 2 1 10 10 O 1.21882 * 119.99857 * 359.72608 * 9 7 2 11 11 C 1.47281 * 120.00343 * 180.02562 * 9 7 2 12 12 C 1.39967 * 120.18701 * 5.51980 * 11 9 7 13 13 C 1.37682 * 119.92447 * 179.97438 * 12 11 9 14 14 F 1.35092 * 119.84218 * 180.02562 * 13 12 11 15 15 C 1.39383 * 120.30976 * 359.97438 * 13 12 11 16 16 F 1.35105 * 119.80479 * 180.02562 * 15 13 12 17 17 C 1.38197 * 120.38952 * 0.02562 * 15 13 12 18 18 C 1.38853 * 120.06364 * 359.75250 * 17 15 13 19 19 N 1.38750 * 120.15548 * 180.27442 * 18 17 15 20 20 H 0.97007 * 119.99830 * 0.02562 * 1 2 3 21 21 H 1.07999 * 120.03386 * 359.95754 * 12 11 9 22 22 H 1.07999 * 119.96987 * 180.02562 * 17 15 13 23 23 H 0.97008 * 119.99394 * 204.50738 * 19 18 17 24 24 H 0.96992 * 120.00501 * 24.50743 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 3.0932 1.6963 -1.2125 5 1 1.2745 2.7465 -0.0006 6 1 3.0932 1.6964 1.2125 7 6 2.0069 -1.2153 0.0005 8 1 3.0869 -1.2153 0.0010 9 6 1.2984 -2.4425 0.0005 10 8 0.0796 -2.4425 0.0051 11 6 2.0347 -3.7181 0.0017 12 6 3.4294 -3.7255 0.1191 13 6 4.1123 -4.9210 0.1201 14 9 5.4584 -4.9263 0.2341 15 6 3.4211 -6.1260 0.0052 16 9 4.1014 -7.2932 0.0078 17 6 2.0441 -6.1337 -0.1115 18 6 1.3391 -4.9374 -0.1097 19 7 -0.0439 -4.9432 -0.2210 20 1 -0.4850 0.8401 -0.0004 21 1 3.9693 -2.7944 0.2086 22 1 1.5154 -7.0712 -0.1998 23 1 -0.5056 -4.1647 -0.5700 24 1 -0.5490 -5.7255 0.0502 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136685077.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:44 Heat of formation + Delta-G solvation = -127.463855 kcal Electronic energy + Delta-G solvation = -15053.847397 eV Core-core repulsion = 11988.164144 eV Total energy + Delta-G solvation = -3065.683253 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.050 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.35953 -49.41919 -40.47412 -37.99043 -35.29976 -34.56959 -32.03284 -29.52031 -28.45672 -24.83114 -23.54317 -21.73094 -19.12213 -18.85245 -18.21357 -17.99726 -17.20093 -17.04962 -16.58946 -15.87807 -15.84498 -15.38574 -14.98370 -14.93130 -14.44605 -14.05632 -13.81944 -13.21225 -13.07041 -12.64175 -12.48810 -12.25233 -12.06916 -11.12472 -10.96534 -9.85938 -9.58119 -8.50619 -8.33316 -7.04522 -0.14077 0.29596 1.39892 1.41423 1.54128 2.06006 2.22090 2.66824 2.80603 3.17630 3.48860 3.68656 3.77400 3.99955 4.23818 4.64658 4.89984 4.92234 5.05955 5.23205 5.29560 5.81565 5.95802 6.59011 6.70605 6.74100 7.14518 8.22584 8.46817 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.034589 B = 0.008658 C = 0.006948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.300130 B = 3233.109002 C = 4029.030811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.030 3.970 3 Si 0.987 3.013 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.542 4.542 8 H 0.091 0.909 9 C 0.378 3.622 10 O -0.578 6.578 11 C -0.197 4.197 12 C -0.051 4.051 13 C -0.018 4.018 14 F -0.144 7.144 15 C 0.113 3.887 16 F -0.132 7.132 17 C -0.209 4.209 18 C 0.258 3.742 19 N -0.848 5.848 20 H 0.283 0.717 21 H 0.151 0.849 22 H 0.171 0.829 23 H 0.410 0.590 24 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.219 -6.331 -0.353 7.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.190 4.190 3 Si 0.806 3.194 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.573 4.573 8 H 0.109 0.891 9 C 0.279 3.721 10 O -0.472 6.472 11 C -0.204 4.204 12 C -0.071 4.071 13 C -0.040 4.040 14 F -0.123 7.123 15 C 0.092 3.908 16 F -0.110 7.110 17 C -0.232 4.232 18 C 0.147 3.853 19 N -0.393 5.393 20 H 0.093 0.907 21 H 0.169 0.831 22 H 0.188 0.812 23 H 0.248 0.752 24 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 3.523 -6.303 -0.359 7.230 hybrid contribution 0.355 0.444 0.049 0.571 sum 3.878 -5.859 -0.309 7.033 Atomic orbital electron populations 1.70039 1.09500 1.29918 1.31155 1.27075 0.95495 1.05038 0.91359 0.85208 0.78664 0.75069 0.80462 1.17848 1.19420 1.17887 1.21369 0.96107 0.92398 1.47404 0.89147 1.18286 0.88180 0.87272 0.78391 1.90261 1.16103 1.88494 1.52293 1.21155 0.93999 0.96295 1.08910 1.21154 0.93363 0.96864 0.95716 1.17359 0.77441 0.93388 1.15805 1.91429 1.28808 1.97303 1.94725 1.17499 0.90171 0.79661 1.03451 1.91478 1.80015 1.45616 1.93925 1.20589 0.90988 0.98954 1.12697 1.17855 0.85948 0.91535 0.89981 1.42831 1.02810 1.22564 1.71119 0.90694 0.83122 0.81170 0.75217 0.76554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -42.83 11.73 21.88 0.26 -42.58 14 2 C 0.03 1.56 5.50 85.39 0.47 2.03 14 3 Si 0.99 37.54 29.56 68.60 2.03 39.57 14 4 H -0.25 -9.25 7.11 99.48 0.71 -8.54 14 5 H -0.27 -9.82 7.11 99.48 0.71 -9.11 14 6 H -0.25 -9.28 7.11 99.48 0.71 -8.57 14 7 C -0.54 -28.47 8.84 23.64 0.21 -28.26 14 8 H 0.09 4.28 6.05 -2.91 -0.02 4.26 14 9 C 0.38 20.24 6.88 25.51 0.18 20.42 14 10 O -0.58 -33.58 12.36 -4.93 -0.06 -33.64 14 11 C -0.20 -8.76 5.90 -19.85 -0.12 -8.88 14 12 C -0.05 -2.04 9.39 22.56 0.21 -1.82 14 13 C -0.02 -0.65 7.30 22.41 0.16 -0.49 14 14 F -0.14 -5.14 17.17 44.97 0.77 -4.37 14 15 C 0.11 3.79 7.31 22.54 0.16 3.96 14 16 F -0.13 -4.17 17.17 44.97 0.77 -3.39 14 17 C -0.21 -6.56 9.89 22.41 0.22 -6.34 14 18 C 0.26 9.79 6.77 38.83 0.26 10.05 14 19 N -0.85 -29.93 8.49 -50.78 -0.43 -30.36 14 20 H 0.28 14.01 8.29 -92.70 -0.77 13.24 14 21 H 0.15 5.78 6.23 -2.91 -0.02 5.76 14 22 H 0.17 4.09 8.06 -2.91 -0.02 4.07 14 23 H 0.41 17.00 6.10 -92.70 -0.57 16.44 14 24 H 0.40 10.80 8.90 -92.71 -0.83 9.98 14 Total: -1.00 -61.60 229.21 5.00 -56.60 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: -0.10 Total: 27.51 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: 1.76 Total: -9.34 kcal Atomic # 7 Polarization: -72.76 SS G_CDS: -0.17 Total: -72.94 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -0.06 Total: -33.64 kcal Atomic # 9 Polarization: -9.31 SS G_CDS: 1.54 Total: -7.76 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Total: -61.60 5.00 -56.60 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136685077.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.862 kcal (2) G-P(sol) polarization free energy of solvation -61.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds