Wall clock time and date at job start Mon Mar 30 2020 03:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30479 * 1 3 3 Si 1.86802 * 120.00175 * 2 1 4 4 H 1.48496 * 109.47275 * 274.98262 * 3 2 1 5 5 H 1.48503 * 109.46730 * 34.98591 * 3 2 1 6 6 H 1.48501 * 109.47129 * 154.98002 * 3 2 1 7 7 C 1.40463 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00038 * 173.80594 * 7 2 1 9 9 C 1.41637 * 120.00290 * 354.07752 * 7 2 1 10 10 O 1.21742 * 119.99372 * 5.99544 * 9 7 2 11 11 C 1.48096 * 120.00227 * 185.99716 * 9 7 2 12 12 C 1.40455 * 119.25424 * 179.97438 * 11 9 7 13 13 C 1.36369 * 119.81729 * 180.02562 * 12 11 9 14 14 C 1.40883 * 118.26733 * 359.97438 * 13 12 11 15 15 C 1.40318 * 121.26963 * 180.02562 * 14 13 12 16 16 C 1.36230 * 119.66665 * 180.02562 * 15 14 13 17 17 C 1.39420 * 120.91774 * 359.95358 * 16 15 14 18 18 C 1.36018 * 121.07120 * 0.02651 * 17 16 15 19 19 C 1.40889 * 119.72417 * 359.97438 * 18 17 16 20 20 N 1.32042 * 119.25916 * 359.73330 * 11 9 7 21 21 H 0.96995 * 119.99817 * 0.02562 * 1 2 3 22 22 H 1.07999 * 120.09254 * 0.02562 * 12 11 9 23 23 H 1.08006 * 120.86788 * 179.97438 * 13 12 11 24 24 H 1.08004 * 120.16738 * 359.97438 * 15 14 13 25 25 H 1.07991 * 119.54226 * 179.97438 * 16 15 14 26 26 H 1.07998 * 119.46589 * 180.02562 * 17 16 15 27 27 H 1.07990 * 120.14029 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3048 0.0000 0.0000 3 14 2.2389 1.6177 0.0000 4 1 2.3811 2.1072 -1.3947 5 1 1.4929 2.6199 0.8028 6 1 3.5851 1.4120 0.5921 7 6 2.0071 -1.2165 0.0005 8 1 3.0824 -1.2193 -0.1004 9 6 1.3046 -2.4398 0.1277 10 8 0.0872 -2.4454 0.1266 11 6 2.0510 -3.7118 0.2619 12 6 1.3385 -4.9157 0.3875 13 6 2.0142 -6.0937 0.5123 14 6 3.4226 -6.0585 0.5100 15 6 4.1807 -7.2327 0.6339 16 6 5.5411 -7.1607 0.6282 17 6 6.1931 -5.9351 0.4998 18 6 5.4915 -4.7762 0.3771 19 6 4.0830 -4.8088 0.3786 20 7 3.3712 -3.6892 0.2559 21 1 -0.4850 0.8400 -0.0004 22 1 0.2585 -4.9086 0.3852 23 1 1.4835 -7.0292 0.6103 24 1 3.6882 -8.1887 0.7341 25 1 6.1226 -8.0656 0.7241 26 1 7.2726 -5.9052 0.4978 27 1 6.0120 -3.8352 0.2781 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000197359619.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:36 Heat of formation + Delta-G solvation = 9.559366 kcal Electronic energy + Delta-G solvation = -14311.259271 eV Core-core repulsion = 11805.747321 eV Total energy + Delta-G solvation = -2505.511951 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.069 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.21322 -37.26981 -35.71568 -33.06353 -32.72846 -30.01846 -29.64994 -26.98849 -24.17154 -23.06996 -21.65163 -20.29056 -17.43213 -17.10899 -16.54125 -15.70055 -14.79732 -14.28734 -14.03363 -13.91547 -13.62819 -12.81578 -12.75713 -12.67248 -12.17578 -11.43390 -11.30048 -11.22051 -11.05493 -10.75847 -10.37399 -10.30627 -10.10766 -9.01235 -8.92178 -8.20410 -7.85269 -7.56846 -6.39793 -4.92601 0.78927 1.23665 2.44701 3.00958 3.13234 3.18869 3.24240 3.99906 4.18103 4.71798 4.82137 4.93134 5.11273 5.27450 5.32025 5.51627 5.57996 5.72137 5.80725 6.06945 6.22904 6.39639 6.43398 6.57925 6.66155 6.78263 6.98752 7.19288 7.36717 8.19730 8.57607 8.71738 8.82912 10.21343 10.43083 Molecular weight = 227.07amu Principal moments of inertia in cm(-1) A = 0.039236 B = 0.007370 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.466396 B = 3798.461098 C = 4499.661219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.728 5.728 2 C 0.072 3.928 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.478 4.478 8 H 0.088 0.912 9 C 0.382 3.618 10 O -0.541 6.541 11 C 0.143 3.857 12 C -0.137 4.137 13 C -0.083 4.083 14 C -0.114 4.114 15 C -0.096 4.096 16 C -0.133 4.133 17 C -0.116 4.116 18 C -0.089 4.089 19 C 0.124 3.876 20 N -0.449 5.449 21 H 0.276 0.724 22 H 0.141 0.859 23 H 0.131 0.869 24 H 0.122 0.878 25 H 0.119 0.881 26 H 0.122 0.878 27 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.602 -9.333 1.088 12.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.357 5.357 2 C -0.151 4.151 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.509 4.509 8 H 0.106 0.894 9 C 0.279 3.721 10 O -0.430 6.430 11 C -0.008 4.008 12 C -0.157 4.157 13 C -0.109 4.109 14 C -0.117 4.117 15 C -0.115 4.115 16 C -0.151 4.151 17 C -0.135 4.135 18 C -0.107 4.107 19 C 0.000 4.000 20 N -0.160 5.160 21 H 0.087 0.913 22 H 0.159 0.841 23 H 0.149 0.851 24 H 0.140 0.860 25 H 0.137 0.863 26 H 0.140 0.860 27 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.359 -8.531 1.006 11.986 hybrid contribution 0.097 -0.205 0.115 0.254 sum 8.456 -8.737 1.121 12.210 Atomic orbital electron populations 1.69948 1.07748 1.28464 1.29551 1.26160 0.94686 1.01431 0.92867 0.86254 0.80747 0.80342 0.79093 1.19382 1.20081 1.18152 1.21087 0.96351 0.90909 1.42558 0.89419 1.18038 0.87964 0.84947 0.81143 1.90515 1.14449 1.86900 1.51171 1.23843 0.89403 0.98018 0.89560 1.22079 1.02477 0.92582 0.98577 1.21340 0.92656 0.98608 0.98271 1.18930 0.94370 0.94665 1.03694 1.20898 0.94082 0.96832 0.99666 1.20787 0.94510 0.97689 1.02096 1.20766 0.99797 0.92315 1.00665 1.20887 0.91661 0.98911 0.99278 1.19193 0.94368 0.88594 0.97828 1.68303 1.07995 1.27769 1.11931 0.91300 0.84079 0.85103 0.86012 0.86308 0.85974 0.84970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.72 11.75 55.57 0.65 -20.07 15 2 C 0.07 1.96 5.50 -17.29 -0.10 1.86 15 3 Si 0.91 19.48 29.57 -169.99 -5.03 14.46 15 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 15 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 15 6 H -0.26 -5.42 7.11 56.52 0.40 -5.01 15 7 C -0.48 -13.53 8.99 -37.45 -0.34 -13.86 15 8 H 0.09 2.38 7.36 -52.49 -0.39 2.00 15 9 C 0.38 11.05 6.91 -34.24 -0.24 10.81 15 10 O -0.54 -17.02 14.85 5.15 0.08 -16.94 15 11 C 0.14 3.56 6.73 -82.90 -0.56 3.00 15 12 C -0.14 -2.90 9.54 -39.42 -0.38 -3.28 15 13 C -0.08 -1.45 9.88 -39.25 -0.39 -1.84 15 14 C -0.11 -2.02 5.75 -106.69 -0.61 -2.64 15 15 C -0.10 -1.34 9.77 -39.52 -0.39 -1.72 15 16 C -0.13 -1.66 9.96 -39.86 -0.40 -2.05 15 17 C -0.12 -1.52 9.94 -39.94 -0.40 -1.92 15 18 C -0.09 -1.46 9.99 -39.38 -0.39 -1.85 15 19 C 0.12 2.47 6.61 -84.83 -0.56 1.91 15 20 N -0.45 -10.55 9.37 -7.50 -0.07 -10.62 15 21 H 0.28 6.98 8.29 -40.82 -0.34 6.65 15 22 H 0.14 2.93 7.60 -52.49 -0.40 2.53 15 23 H 0.13 1.76 8.06 -52.48 -0.42 1.33 15 24 H 0.12 1.33 8.06 -52.48 -0.42 0.91 15 25 H 0.12 1.10 8.06 -52.49 -0.42 0.68 15 26 H 0.12 1.22 8.06 -52.49 -0.42 0.80 15 27 H 0.13 2.03 8.06 -52.49 -0.42 1.61 15 LS Contribution 249.97 15.07 3.77 3.77 Total: -1.00 -32.61 249.97 -7.37 -39.98 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -2.03 Total: 1.02 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -4.74 Total: -11.59 kcal Atomic # 7 Polarization: -31.27 SS G_CDS: 0.58 Total: -30.69 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.08 Total: -16.94 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -32.61 -7.37 -39.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000197359619.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.539 kcal (2) G-P(sol) polarization free energy of solvation -32.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds