Wall clock time and date at job start Mon Mar 30 2020 03:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30479 * 1 3 3 Si 1.86802 * 120.00175 * 2 1 4 4 H 1.48496 * 109.47275 * 274.98262 * 3 2 1 5 5 H 1.48503 * 109.46730 * 34.98591 * 3 2 1 6 6 H 1.48501 * 109.47129 * 154.98002 * 3 2 1 7 7 C 1.40463 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00038 * 173.80594 * 7 2 1 9 9 C 1.41637 * 120.00290 * 354.07752 * 7 2 1 10 10 O 1.21742 * 119.99372 * 5.99544 * 9 7 2 11 11 C 1.48096 * 120.00227 * 185.99716 * 9 7 2 12 12 C 1.40455 * 119.25424 * 179.97438 * 11 9 7 13 13 C 1.36369 * 119.81729 * 180.02562 * 12 11 9 14 14 C 1.40883 * 118.26733 * 359.97438 * 13 12 11 15 15 C 1.40318 * 121.26963 * 180.02562 * 14 13 12 16 16 C 1.36230 * 119.66665 * 180.02562 * 15 14 13 17 17 C 1.39420 * 120.91774 * 359.95358 * 16 15 14 18 18 C 1.36018 * 121.07120 * 0.02651 * 17 16 15 19 19 C 1.40889 * 119.72417 * 359.97438 * 18 17 16 20 20 N 1.32042 * 119.25916 * 359.73330 * 11 9 7 21 21 H 0.96995 * 119.99817 * 0.02562 * 1 2 3 22 22 H 1.07999 * 120.09254 * 0.02562 * 12 11 9 23 23 H 1.08006 * 120.86788 * 179.97438 * 13 12 11 24 24 H 1.08004 * 120.16738 * 359.97438 * 15 14 13 25 25 H 1.07991 * 119.54226 * 179.97438 * 16 15 14 26 26 H 1.07998 * 119.46589 * 180.02562 * 17 16 15 27 27 H 1.07990 * 120.14029 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3048 0.0000 0.0000 3 14 2.2389 1.6177 0.0000 4 1 2.3811 2.1072 -1.3947 5 1 1.4929 2.6199 0.8028 6 1 3.5851 1.4120 0.5921 7 6 2.0071 -1.2165 0.0005 8 1 3.0824 -1.2193 -0.1004 9 6 1.3046 -2.4398 0.1277 10 8 0.0872 -2.4454 0.1266 11 6 2.0510 -3.7118 0.2619 12 6 1.3385 -4.9157 0.3875 13 6 2.0142 -6.0937 0.5123 14 6 3.4226 -6.0585 0.5100 15 6 4.1807 -7.2327 0.6339 16 6 5.5411 -7.1607 0.6282 17 6 6.1931 -5.9351 0.4998 18 6 5.4915 -4.7762 0.3771 19 6 4.0830 -4.8088 0.3786 20 7 3.3712 -3.6892 0.2559 21 1 -0.4850 0.8400 -0.0004 22 1 0.2585 -4.9086 0.3852 23 1 1.4835 -7.0292 0.6103 24 1 3.6882 -8.1887 0.7341 25 1 6.1226 -8.0656 0.7241 26 1 7.2726 -5.9052 0.4978 27 1 6.0120 -3.8352 0.2781 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000197359619.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:36 Heat of formation + Delta-G solvation = -12.155060 kcal Electronic energy + Delta-G solvation = -14312.200880 eV Core-core repulsion = 11805.747321 eV Total energy + Delta-G solvation = -2506.453559 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.069 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.64233 -39.06351 -37.38258 -34.90710 -34.41205 -31.51300 -30.95670 -29.01400 -25.77965 -24.47665 -22.92461 -22.11968 -18.98440 -18.75966 -17.92674 -17.70208 -16.40606 -15.65871 -15.49402 -15.38269 -15.11270 -14.72925 -14.26243 -14.09459 -13.90307 -13.31825 -12.84436 -12.55438 -12.45923 -12.33944 -12.23000 -12.06409 -11.50955 -11.03107 -10.57734 -9.66374 -9.63791 -9.14771 -8.44463 -7.13890 -0.57871 -0.16594 1.08794 1.32126 1.35438 1.54000 1.77072 2.19426 2.39755 3.11588 3.39154 3.64645 3.70880 3.84621 4.01450 4.05491 4.33088 4.36087 4.57874 4.64618 4.87209 5.06577 5.13429 5.18140 5.21825 5.47358 5.52896 5.69494 6.01056 6.02850 6.60223 6.63121 7.07582 8.11518 8.38133 Molecular weight = 227.07amu Principal moments of inertia in cm(-1) A = 0.039236 B = 0.007370 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.466396 B = 3798.461098 C = 4499.661219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.021 3.979 3 Si 0.999 3.001 4 H -0.255 1.255 5 H -0.260 1.260 6 H -0.253 1.253 7 C -0.512 4.512 8 H 0.088 0.912 9 C 0.361 3.639 10 O -0.587 6.587 11 C 0.101 3.899 12 C -0.167 4.167 13 C -0.056 4.056 14 C -0.124 4.124 15 C -0.095 4.095 16 C -0.115 4.115 17 C -0.090 4.090 18 C -0.119 4.119 19 C 0.090 3.910 20 N -0.475 5.475 21 H 0.287 0.713 22 H 0.130 0.870 23 H 0.180 0.820 24 H 0.163 0.837 25 H 0.169 0.831 26 H 0.164 0.836 27 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.852 -11.789 1.468 16.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.199 4.199 3 Si 0.817 3.183 4 H -0.179 1.179 5 H -0.184 1.184 6 H -0.176 1.176 7 C -0.543 4.543 8 H 0.106 0.894 9 C 0.261 3.739 10 O -0.480 6.480 11 C -0.050 4.050 12 C -0.187 4.187 13 C -0.082 4.082 14 C -0.126 4.126 15 C -0.114 4.114 16 C -0.132 4.132 17 C -0.109 4.109 18 C -0.138 4.138 19 C -0.034 4.034 20 N -0.186 5.186 21 H 0.098 0.902 22 H 0.148 0.852 23 H 0.197 0.803 24 H 0.180 0.820 25 H 0.186 0.814 26 H 0.182 0.818 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.617 -11.001 1.385 16.059 hybrid contribution -0.662 0.269 0.015 0.715 sum 10.955 -10.732 1.399 15.400 Atomic orbital electron populations 1.70045 1.09865 1.30377 1.30156 1.27371 0.95613 1.05598 0.91339 0.84985 0.79009 0.74386 0.79920 1.17897 1.18391 1.17615 1.21417 0.96554 0.92191 1.44109 0.89408 1.18600 0.87860 0.87300 0.80123 1.90435 1.16084 1.88323 1.53157 1.23116 0.90281 0.97556 0.94010 1.21934 1.01970 0.93095 1.01738 1.21801 0.92944 0.98726 0.94694 1.19309 0.94729 0.95385 1.03216 1.21346 0.94790 0.96692 0.98523 1.21423 0.94329 0.99032 0.98425 1.21316 1.01826 0.91251 0.96520 1.21059 0.90328 1.00724 1.01664 1.19738 0.95795 0.88737 0.99150 1.68081 1.07585 1.30555 1.12410 0.90222 0.85183 0.80290 0.81968 0.81379 0.81849 0.85178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -46.54 11.75 21.91 0.26 -46.29 15 2 C 0.02 1.16 5.50 85.44 0.47 1.63 15 3 Si 1.00 41.16 29.57 68.60 2.03 43.19 15 4 H -0.25 -9.86 7.11 99.48 0.71 -9.15 15 5 H -0.26 -9.94 7.11 99.48 0.71 -9.24 15 6 H -0.25 -10.07 7.11 99.48 0.71 -9.36 15 7 C -0.51 -31.02 8.99 23.65 0.21 -30.81 15 8 H 0.09 5.11 7.36 -2.91 -0.02 5.09 15 9 C 0.36 22.68 6.91 25.73 0.18 22.86 15 10 O -0.59 -40.15 14.85 -4.48 -0.07 -40.21 15 11 C 0.10 5.39 6.73 42.27 0.28 5.68 15 12 C -0.17 -7.48 9.54 22.37 0.21 -7.26 15 13 C -0.06 -1.90 9.88 22.48 0.22 -1.67 15 14 C -0.12 -4.13 5.75 -21.21 -0.12 -4.25 15 15 C -0.10 -2.12 9.77 22.31 0.22 -1.90 15 16 C -0.11 -2.09 9.96 22.09 0.22 -1.87 15 17 C -0.09 -1.91 9.94 22.04 0.22 -1.69 15 18 C -0.12 -3.73 9.99 22.40 0.22 -3.50 15 19 C 0.09 3.57 6.61 40.50 0.27 3.84 15 20 N -0.47 -23.57 9.37 -177.64 -1.66 -25.24 15 21 H 0.29 15.17 8.29 -92.71 -0.77 14.40 15 22 H 0.13 5.89 7.60 -2.91 -0.02 5.87 15 23 H 0.18 4.14 8.06 -2.91 -0.02 4.11 15 24 H 0.16 2.36 8.06 -2.91 -0.02 2.34 15 25 H 0.17 1.60 8.06 -2.92 -0.02 1.58 15 26 H 0.16 2.18 8.06 -2.91 -0.02 2.16 15 27 H 0.13 3.97 8.06 -2.92 -0.02 3.95 15 Total: -1.00 -80.12 249.97 4.35 -75.76 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.19 Total: 11.74 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 2.61 Total: -18.96 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -1.41 Total: -71.52 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -0.07 Total: -40.21 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -80.12 4.35 -75.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000197359619.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.609 kcal (2) G-P(sol) polarization free energy of solvation -80.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds