Wall clock time and date at job start Mon Mar 30 2020 03:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99887 * 2 1 4 4 H 1.48493 * 109.47476 * 270.00695 * 3 2 1 5 5 H 1.48507 * 109.46731 * 30.00740 * 3 2 1 6 6 H 1.48495 * 109.47086 * 150.00313 * 3 2 1 7 7 C 1.37878 * 120.00388 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99857 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99861 * 179.97438 * 7 2 1 10 10 H 1.09002 * 109.47093 * 60.00165 * 9 7 2 11 11 N 1.46898 * 109.47491 * 299.99612 * 9 7 2 12 12 C 1.50701 * 109.47009 * 179.97438 * 9 7 2 13 13 C 1.38499 * 120.38476 * 100.20562 * 12 9 7 14 14 C 1.39289 * 118.37211 * 180.26750 * 13 12 9 15 15 N 1.39779 * 120.47737 * 179.77033 * 14 13 12 16 16 C 1.38876 * 119.04745 * 359.75485 * 14 13 12 17 17 N 1.31834 * 120.67149 * 0.02562 * 16 14 13 18 18 C 1.31964 * 121.77985 * 359.97438 * 17 16 14 19 19 Cl 1.73599 * 119.54886 * 179.97438 * 18 17 16 20 20 H 0.96995 * 120.00109 * 359.97438 * 1 2 3 21 21 H 1.00898 * 111.00172 * 176.04414 * 11 9 7 22 22 H 1.00904 * 111.00167 * 300.00561 * 11 9 7 23 23 H 1.07994 * 120.81737 * 359.97438 * 13 12 9 24 24 H 0.97000 * 120.00184 * 179.97438 * 15 14 13 25 25 H 0.96998 * 119.99963 * 359.97438 * 15 14 13 26 26 H 1.08004 * 119.66536 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8752 -0.6802 0.8889 11 7 4.0008 -0.5012 -1.2006 12 6 4.0140 -2.6147 -0.0010 13 6 4.4467 -3.2048 -1.1769 14 6 4.8973 -4.5219 -1.1296 15 7 5.3394 -5.1621 -2.2909 16 6 4.9014 -5.1900 0.0879 17 7 4.4851 -4.5900 1.1855 18 6 4.0522 -3.3435 1.1747 19 17 3.5166 -2.6103 2.6544 20 1 -0.4850 0.8400 0.0004 21 1 5.0073 -0.4310 -1.1924 22 1 3.6769 -0.9585 -2.0397 23 1 4.4306 -2.6588 -2.1085 24 1 5.6522 -6.0794 -2.2501 25 1 5.3335 -4.6890 -3.1377 26 1 5.2491 -6.2113 0.1361 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211714927.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:57 Heat of formation + Delta-G solvation = 3.379306 kcal Electronic energy + Delta-G solvation = -13512.787707 eV Core-core repulsion = 11036.867670 eV Total energy + Delta-G solvation = -2475.920037 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.052 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.28904 -37.50911 -37.05088 -35.81299 -34.10901 -31.72199 -29.91307 -28.36782 -25.31996 -23.84144 -21.90151 -19.03849 -18.52066 -18.23868 -17.41799 -16.67082 -16.23544 -15.76387 -15.42170 -15.19543 -14.61670 -14.25869 -13.72544 -13.32569 -13.05451 -12.67559 -12.48960 -12.02672 -11.78390 -11.67602 -11.49023 -10.71014 -10.66074 -10.16098 -9.40970 -8.53946 -8.19462 -6.31453 0.23554 0.33323 1.21519 1.54739 1.60111 1.73811 2.55933 2.79080 2.87194 3.15017 3.66439 3.87569 4.02664 4.07237 4.27248 4.62720 4.80966 4.99770 5.21583 5.45461 5.62077 6.15949 6.35209 6.45402 6.78563 6.87995 6.96621 6.97951 7.43371 8.93904 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.029821 B = 0.010740 C = 0.008954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.713436 B = 2606.531206 C = 3126.448484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.032 3.968 3 Si 0.992 3.008 4 H -0.271 1.271 5 H -0.327 1.327 6 H -0.261 1.261 7 C -0.496 4.496 8 H 0.026 0.974 9 C 0.228 3.772 10 H 0.050 0.950 11 N -0.840 5.840 12 C -0.071 4.071 13 C -0.166 4.166 14 C 0.187 3.813 15 N -0.845 5.845 16 C 0.020 3.980 17 N -0.460 5.460 18 C 0.088 3.912 19 Cl -0.052 7.052 20 H 0.264 0.736 21 H 0.336 0.664 22 H 0.344 0.656 23 H 0.154 0.846 24 H 0.415 0.585 25 H 0.411 0.589 26 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.910 -8.570 -5.262 17.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.167 4.167 3 Si 0.822 3.178 4 H -0.197 1.197 5 H -0.257 1.257 6 H -0.186 1.186 7 C -0.534 4.534 8 H 0.045 0.955 9 C 0.117 3.883 10 H 0.068 0.932 11 N -0.373 5.373 12 C -0.077 4.077 13 C -0.197 4.197 14 C 0.077 3.923 15 N -0.386 5.386 16 C -0.144 4.144 17 N -0.170 5.170 18 C -0.077 4.077 19 Cl -0.024 7.024 20 H 0.072 0.928 21 H 0.149 0.851 22 H 0.159 0.841 23 H 0.172 0.828 24 H 0.246 0.754 25 H 0.242 0.758 26 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 13.319 -8.236 -4.081 16.183 hybrid contribution 0.170 0.163 -0.843 0.875 sum 13.489 -8.073 -4.924 16.474 Atomic orbital electron populations 1.70074 1.08487 1.28026 1.52114 1.25736 0.95063 1.03218 0.92707 0.84963 0.77570 0.76929 0.78304 1.19678 1.25737 1.18593 1.20654 0.89112 0.92486 1.51163 0.95540 1.18342 0.93823 0.84826 0.91307 0.93189 1.58993 1.14875 1.58003 1.05383 1.21527 0.94147 1.00006 0.92002 1.20988 1.05426 0.94888 0.98420 1.18779 0.92158 0.91706 0.89615 1.42250 1.72223 1.17597 1.06505 1.22569 1.04756 1.01419 0.85690 1.66720 1.09027 1.08891 1.32358 1.21147 1.06571 0.91874 0.88153 1.98341 1.88572 1.80764 1.34758 0.92763 0.85051 0.84096 0.82825 0.75372 0.75818 0.79334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.54 13.96 21.45 0.30 -59.24 15 2 C 0.03 1.84 5.47 84.66 0.46 2.30 15 3 Si 0.99 48.69 26.03 68.60 1.79 50.48 15 4 H -0.27 -12.79 7.11 99.48 0.71 -12.08 15 5 H -0.33 -16.40 7.11 99.48 0.71 -15.70 15 6 H -0.26 -12.19 6.54 99.48 0.65 -11.54 15 7 C -0.50 -27.67 9.07 25.60 0.23 -27.44 15 8 H 0.03 1.68 7.98 -2.91 -0.02 1.66 15 9 C 0.23 10.20 1.80 43.42 0.08 10.27 15 10 H 0.05 2.39 6.42 -2.39 -0.02 2.38 15 11 N -0.84 -31.63 6.25 -174.96 -1.09 -32.73 15 12 C -0.07 -2.81 5.03 -19.77 -0.10 -2.91 15 13 C -0.17 -5.12 9.22 22.59 0.21 -4.91 15 14 C 0.19 4.67 6.79 38.28 0.26 4.93 15 15 N -0.85 -12.02 9.10 -51.09 -0.47 -12.49 15 16 C 0.02 0.55 11.06 84.85 0.94 1.49 15 17 N -0.46 -16.83 10.33 -186.17 -1.92 -18.75 15 18 C 0.09 3.61 7.26 84.71 0.62 4.22 15 19 Cl -0.05 -2.24 27.47 -2.72 -0.07 -2.32 15 20 H 0.26 15.67 8.31 -92.71 -0.77 14.90 15 21 H 0.34 10.32 9.06 -89.70 -0.81 9.51 15 22 H 0.34 11.98 7.34 -89.69 -0.66 11.32 15 23 H 0.15 3.99 6.37 -2.91 -0.02 3.97 15 24 H 0.42 3.64 8.86 -92.71 -0.82 2.82 15 25 H 0.41 4.49 8.86 -92.71 -0.82 3.67 15 26 H 0.19 3.59 8.06 -2.91 -0.02 3.57 15 Total: -1.00 -71.94 240.85 -0.68 -72.62 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -1.90 Total: 14.47 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 2.70 Total: -12.04 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -3.18 Total: -123.20 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 1.79 Total: 50.48 kcal Atomic # 17 Polarization: -2.24 SS G_CDS: -0.07 Total: -2.32 kcal Total: -71.94 -0.68 -72.62 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211714927.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.995 kcal (2) G-P(sol) polarization free energy of solvation -71.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds