Wall clock time and date at job start Mon Mar 30 2020 03:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 S 1.81404 * 109.47098 * 179.97438 * 9 7 2 11 11 C 1.76192 * 102.99967 * 179.97438 * 10 9 7 12 12 C 1.38799 * 120.08942 * 359.72346 * 11 10 9 13 13 C 1.38225 * 120.02933 * 179.72202 * 12 11 10 14 14 C 1.38285 * 120.20430 * 0.55642 * 13 12 11 15 15 C 1.38439 * 120.18211 * 359.72137 * 14 13 12 16 16 F 1.35103 * 120.01898 * 179.97438 * 15 14 13 17 17 C 1.38832 * 119.96782 * 359.97438 * 15 14 13 18 18 N 1.40191 * 120.10381 * 180.02562 * 17 15 14 19 19 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 21 21 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 22 22 H 1.08004 * 119.98837 * 0.02562 * 12 11 10 23 23 H 1.07996 * 119.89175 * 180.28081 * 13 12 11 24 24 H 1.07999 * 119.90901 * 179.70089 * 14 13 12 25 25 H 0.97002 * 119.99695 * 179.97438 * 18 17 15 26 26 H 0.97002 * 119.99900 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 16 2.4297 -3.8780 0.0005 11 6 1.3823 -5.2948 0.0013 12 6 0.0030 -5.1405 0.0075 13 6 -0.8176 -6.2529 0.0023 14 6 -0.2688 -7.5222 0.0025 15 6 1.1058 -7.6861 0.0021 16 9 1.6384 -8.9277 0.0028 17 6 1.9369 -6.5740 0.0010 18 7 3.3293 -6.7367 0.0000 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 0.8903 21 1 0.6246 -2.5571 -0.8897 22 1 -0.4295 -4.1508 0.0115 23 1 -1.8906 -6.1302 0.0026 24 1 -0.9144 -8.3879 0.0033 25 1 3.9085 -5.9586 -0.0012 26 1 3.7135 -7.6274 0.0005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238569603.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:29 Heat of formation + Delta-G solvation = -34.746571 kcal Electronic energy + Delta-G solvation = -12809.600792 eV Core-core repulsion = 10314.151238 eV Total energy + Delta-G solvation = -2495.449554 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.048 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.58456 -38.64307 -34.35690 -33.25853 -30.44637 -28.59400 -28.28935 -23.41853 -22.82440 -21.69325 -17.89815 -17.23538 -16.62593 -16.32197 -15.38714 -15.21669 -14.79930 -14.52379 -14.21800 -13.09123 -12.98625 -12.93493 -12.43289 -12.20923 -11.57012 -11.36999 -10.96598 -10.78229 -10.51891 -10.11018 -9.71431 -9.17038 -9.14169 -8.65438 -7.59332 -6.49059 -6.29350 -4.35048 1.43616 1.71101 2.38987 3.20786 3.26975 3.31206 3.56377 3.92143 4.04330 4.27436 4.62959 5.08400 5.12814 5.26892 5.59436 5.81596 6.15576 6.30016 6.46965 6.72870 6.93301 6.96036 7.04777 7.58141 7.63541 7.86601 7.91264 8.65880 9.29070 10.81860 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.056055 B = 0.006308 C = 0.005687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.386218 B = 4437.800600 C = 4922.041761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.069 3.931 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.519 4.519 8 H 0.068 0.932 9 C 0.076 3.924 10 S -0.163 6.163 11 C -0.121 4.121 12 C -0.096 4.096 13 C -0.132 4.132 14 C -0.126 4.126 15 C 0.021 3.979 16 F -0.149 7.149 17 C 0.197 3.803 18 N -0.869 5.869 19 H 0.267 0.733 20 H 0.045 0.955 21 H 0.045 0.955 22 H 0.138 0.862 23 H 0.128 0.872 24 H 0.129 0.871 25 H 0.406 0.594 26 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.988 -11.505 0.008 11.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.559 4.559 8 H 0.086 0.914 9 C -0.071 4.071 10 S 0.083 5.917 11 C -0.238 4.238 12 C -0.121 4.121 13 C -0.154 4.154 14 C -0.148 4.148 15 C -0.004 4.004 16 F -0.128 7.128 17 C 0.086 3.914 18 N -0.410 5.410 19 H 0.077 0.923 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.155 0.845 23 H 0.145 0.855 24 H 0.147 0.853 25 H 0.237 0.763 26 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 2.079 -11.222 0.012 11.413 hybrid contribution -0.608 0.497 -0.010 0.786 sum 1.471 -10.725 0.002 10.826 Atomic orbital electron populations 1.69939 1.06143 1.27595 1.48950 1.24944 0.95000 0.99305 0.94360 0.86322 0.79724 0.82035 0.78424 1.20262 1.20868 1.19516 1.20608 0.93465 0.88536 1.53282 0.91366 1.21382 0.94262 0.90547 1.00915 1.84995 1.18005 0.97728 1.91003 1.21402 0.97340 0.95619 1.09479 1.21276 0.91542 1.00159 0.99171 1.20679 0.99691 0.91101 1.03901 1.20794 0.92191 0.98577 1.03257 1.16932 0.91464 0.77889 1.14152 1.91393 1.86892 1.39439 1.95085 1.17206 0.84618 0.91185 0.98382 1.42416 1.02713 1.10936 1.84978 0.92294 0.93679 0.93699 0.84471 0.85452 0.85330 0.76297 0.77436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.92 13.29 55.43 0.74 -24.19 15 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 15 3 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 15 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 7 C -0.52 -14.03 9.13 -34.44 -0.31 -14.35 15 8 H 0.07 1.83 7.71 -52.49 -0.40 1.42 15 9 C 0.08 1.88 4.09 36.01 0.15 2.03 15 10 S -0.16 -3.41 20.36 -107.50 -2.19 -5.60 15 11 C -0.12 -2.29 6.12 -38.93 -0.24 -2.53 15 12 C -0.10 -1.73 9.36 -39.38 -0.37 -2.10 15 13 C -0.13 -1.98 10.04 -39.57 -0.40 -2.38 15 14 C -0.13 -1.81 10.02 -39.49 -0.40 -2.21 15 15 C 0.02 0.34 7.31 -39.29 -0.29 0.05 15 16 F -0.15 -2.24 16.64 2.25 0.04 -2.20 15 17 C 0.20 3.35 6.77 -83.37 -0.56 2.79 15 18 N -0.87 -12.60 9.05 32.60 0.29 -12.31 15 19 H 0.27 7.05 8.31 -40.82 -0.34 6.71 15 20 H 0.05 1.16 7.73 -51.92 -0.40 0.76 15 21 H 0.04 1.16 7.76 -51.92 -0.40 0.75 15 22 H 0.14 2.61 5.87 -52.48 -0.31 2.30 15 23 H 0.13 1.57 8.06 -52.49 -0.42 1.15 15 24 H 0.13 1.49 8.06 -52.49 -0.42 1.07 15 25 H 0.41 5.88 7.38 -40.82 -0.30 5.58 15 26 H 0.40 4.81 8.32 -40.82 -0.34 4.47 15 LS Contribution 247.69 15.07 3.73 3.73 Total: -1.00 -28.01 247.69 -7.06 -35.08 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -2.14 Total: 6.77 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -2.52 Total: -16.94 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 1.03 Total: -36.50 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -2.19 Total: -5.60 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -28.01 -7.06 -35.08 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238569603.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.331 kcal (2) G-P(sol) polarization free energy of solvation -28.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds