Wall clock time and date at job start Mon Mar 30 2020 03:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 S 1.81404 * 109.47098 * 179.97438 * 9 7 2 11 11 C 1.76192 * 102.99967 * 179.97438 * 10 9 7 12 12 C 1.38799 * 120.08942 * 359.72346 * 11 10 9 13 13 C 1.38225 * 120.02933 * 179.72202 * 12 11 10 14 14 C 1.38285 * 120.20430 * 0.55642 * 13 12 11 15 15 C 1.38439 * 120.18211 * 359.72137 * 14 13 12 16 16 F 1.35103 * 120.01898 * 179.97438 * 15 14 13 17 17 C 1.38832 * 119.96782 * 359.97438 * 15 14 13 18 18 N 1.40191 * 120.10381 * 180.02562 * 17 15 14 19 19 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 21 21 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 22 22 H 1.08004 * 119.98837 * 0.02562 * 12 11 10 23 23 H 1.07996 * 119.89175 * 180.28081 * 13 12 11 24 24 H 1.07999 * 119.90901 * 179.70089 * 14 13 12 25 25 H 0.97002 * 119.99695 * 179.97438 * 18 17 15 26 26 H 0.97002 * 119.99900 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 16 2.4297 -3.8780 0.0005 11 6 1.3823 -5.2948 0.0013 12 6 0.0030 -5.1405 0.0075 13 6 -0.8176 -6.2529 0.0023 14 6 -0.2688 -7.5222 0.0025 15 6 1.1058 -7.6861 0.0021 16 9 1.6384 -8.9277 0.0028 17 6 1.9369 -6.5740 0.0010 18 7 3.3293 -6.7367 0.0000 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 0.8903 21 1 0.6246 -2.5571 -0.8897 22 1 -0.4295 -4.1508 0.0115 23 1 -1.8906 -6.1302 0.0026 24 1 -0.9144 -8.3879 0.0033 25 1 3.9085 -5.9586 -0.0012 26 1 3.7135 -7.6274 0.0005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238569603.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:29 Heat of formation + Delta-G solvation = -51.353960 kcal Electronic energy + Delta-G solvation = -12810.320943 eV Core-core repulsion = 10314.151238 eV Total energy + Delta-G solvation = -2496.169705 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.048 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.80210 -39.93777 -35.66178 -35.25276 -31.83154 -30.55890 -29.55723 -25.38456 -24.13643 -23.05061 -19.32471 -18.66975 -18.24697 -17.78009 -16.89331 -16.61525 -16.23970 -15.99551 -15.53620 -14.71635 -14.70529 -14.40073 -14.16778 -13.81347 -12.96661 -12.83292 -12.75889 -12.55140 -11.84592 -11.74429 -11.63391 -10.93479 -10.82276 -10.44480 -8.91441 -8.35208 -8.03132 -6.49218 0.11850 0.43078 0.79601 1.41666 1.42132 1.54237 1.82372 2.35923 2.62239 2.80672 3.00299 3.36595 3.92237 4.00030 4.36874 4.54150 4.88434 4.88722 4.91766 4.99380 5.23404 5.45081 5.54669 5.81501 5.83933 6.33260 6.57620 6.79253 7.19483 8.76873 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.056055 B = 0.006308 C = 0.005687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.386218 B = 4437.800600 C = 4922.041761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.019 3.981 3 Si 0.976 3.024 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.081 3.919 10 S -0.157 6.157 11 C -0.150 4.150 12 C -0.110 4.110 13 C -0.128 4.128 14 C -0.107 4.107 15 C 0.017 3.983 16 F -0.142 7.142 17 C 0.194 3.806 18 N -0.861 5.861 19 H 0.272 0.728 20 H 0.023 0.977 21 H 0.023 0.977 22 H 0.116 0.884 23 H 0.158 0.842 24 H 0.167 0.833 25 H 0.406 0.594 26 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.075 -12.700 0.001 12.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.800 3.200 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.066 4.066 10 S 0.087 5.913 11 C -0.268 4.268 12 C -0.135 4.135 13 C -0.149 4.149 14 C -0.129 4.129 15 C -0.009 4.009 16 F -0.121 7.121 17 C 0.082 3.918 18 N -0.403 5.403 19 H 0.081 0.919 20 H 0.042 0.958 21 H 0.041 0.959 22 H 0.134 0.866 23 H 0.176 0.824 24 H 0.185 0.815 25 H 0.236 0.764 26 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.173 -12.462 0.004 12.650 hybrid contribution -0.686 0.682 -0.008 0.967 sum 1.487 -11.781 -0.004 11.874 Atomic orbital electron populations 1.70045 1.07650 1.28710 1.49505 1.25873 0.95868 1.02937 0.93601 0.85272 0.78514 0.77488 0.78767 1.19443 1.20118 1.18863 1.20950 0.93602 0.89910 1.53629 0.91563 1.21013 0.94626 0.92221 0.98755 1.84628 1.17101 0.97451 1.92089 1.21338 0.97459 0.95191 1.12788 1.21277 0.91734 1.00436 1.00085 1.20971 1.00905 0.90323 1.02720 1.21221 0.91989 0.99457 1.00192 1.17063 0.92000 0.77780 1.14062 1.91417 1.86903 1.38744 1.95011 1.17305 0.85685 0.90814 0.97996 1.42399 1.01937 1.11723 1.84278 0.91948 0.95849 0.95880 0.86623 0.82441 0.81543 0.76370 0.75952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.78 13.29 21.45 0.28 -52.49 15 2 C 0.02 1.03 5.46 84.66 0.46 1.49 15 3 Si 0.98 42.50 29.54 68.60 2.03 44.53 15 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 15 5 H -0.28 -11.61 7.11 99.48 0.71 -10.91 15 6 H -0.26 -11.16 7.11 99.48 0.71 -10.45 15 7 C -0.54 -30.06 9.13 25.60 0.23 -29.83 15 8 H 0.07 3.61 7.71 -2.91 -0.02 3.59 15 9 C 0.08 4.22 4.09 71.24 0.29 4.52 15 10 S -0.16 -6.73 20.36 -56.49 -1.15 -7.88 15 11 C -0.15 -5.70 6.12 22.69 0.14 -5.56 15 12 C -0.11 -3.99 9.36 22.40 0.21 -3.78 15 13 C -0.13 -3.55 10.04 22.28 0.22 -3.32 15 14 C -0.11 -2.69 10.02 22.33 0.22 -2.47 15 15 C 0.02 0.49 7.31 22.46 0.16 0.65 15 16 F -0.14 -3.81 16.64 44.97 0.75 -3.06 15 17 C 0.19 6.33 6.77 38.23 0.26 6.59 15 18 N -0.86 -23.87 9.05 -50.78 -0.46 -24.33 15 19 H 0.27 14.51 8.31 -92.71 -0.77 13.74 15 20 H 0.02 1.28 7.73 -2.39 -0.02 1.26 15 21 H 0.02 1.26 7.76 -2.39 -0.02 1.24 15 22 H 0.12 4.63 5.87 -2.91 -0.02 4.62 15 23 H 0.16 3.39 8.06 -2.91 -0.02 3.36 15 24 H 0.17 2.97 8.06 -2.91 -0.02 2.95 15 25 H 0.41 11.45 7.38 -92.71 -0.68 10.76 15 26 H 0.41 9.16 8.32 -92.71 -0.77 8.39 15 Total: -1.00 -60.44 247.69 3.43 -57.01 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -0.23 Total: 17.92 kcal Atomic # 6 Polarization: -33.91 SS G_CDS: 2.21 Total: -31.71 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -0.17 Total: -76.82 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.75 Total: -3.06 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: -6.73 SS G_CDS: -1.15 Total: -7.88 kcal Total: -60.44 3.43 -57.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238569603.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.658 kcal (2) G-P(sol) polarization free energy of solvation -60.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds