Wall clock time and date at job start Mon Mar 30 2020 03:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99750 * 2 1 4 4 H 1.48500 * 109.47137 * 269.99656 * 3 2 1 5 5 H 1.48500 * 109.47480 * 29.99861 * 3 2 1 6 6 H 1.48502 * 109.47146 * 149.99984 * 3 2 1 7 7 C 1.37869 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00459 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99961 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47210 * 300.00159 * 9 7 2 11 11 N 1.46903 * 109.46747 * 60.00013 * 9 7 2 12 12 C 1.50695 * 109.47447 * 179.97438 * 9 7 2 13 13 C 1.39435 * 120.46951 * 109.21708 * 12 9 7 14 14 N 1.39174 * 120.85690 * 0.02562 * 13 12 9 15 15 C 1.39494 * 118.28373 * 179.73106 * 13 12 9 16 16 C 1.37876 * 119.09790 * 0.25117 * 15 13 12 17 17 N 1.32007 * 120.86156 * 0.02562 * 16 15 13 18 18 C 1.32105 * 121.88307 * 359.97438 * 17 16 15 19 19 Cl 1.73605 * 119.58830 * 179.97438 * 18 17 16 20 20 H 0.97007 * 120.00329 * 0.02562 * 1 2 3 21 21 H 1.00906 * 110.99984 * 283.89547 * 11 9 7 22 22 H 1.00897 * 111.00296 * 47.85447 * 11 9 7 23 23 H 0.96996 * 119.99669 * 179.71723 * 14 13 12 24 24 H 0.96997 * 119.99857 * 359.43918 * 14 13 12 25 25 H 1.07996 * 120.44671 * 180.27291 * 15 13 12 26 26 H 1.08001 * 119.57272 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8902 11 7 0.4070 -2.5772 -1.1993 12 6 2.2303 -3.6445 0.0005 13 6 2.3891 -4.4390 1.1354 14 7 1.6493 -4.1929 2.2882 15 6 3.3041 -5.4906 1.0832 16 6 4.0171 -5.7021 -0.0778 17 7 3.8431 -4.9247 -1.1304 18 6 2.9867 -3.9189 -1.1211 19 17 2.8060 -2.9338 -2.5391 20 1 -0.4851 0.8401 -0.0004 21 1 -0.4128 -1.9968 -1.1030 22 1 0.9300 -2.3301 -2.0260 23 1 1.7668 -4.7560 3.0692 24 1 1.0192 -3.4559 2.3120 25 1 3.4517 -6.1306 1.9405 26 1 4.7278 -6.5139 -0.1264 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238585416.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:46 Heat of formation + Delta-G solvation = 27.125378 kcal Electronic energy + Delta-G solvation = -13741.704200 eV Core-core repulsion = 11266.813870 eV Total energy + Delta-G solvation = -2474.890330 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.052 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.66992 -35.89345 -35.37226 -34.11098 -31.54065 -29.70037 -28.95299 -25.94466 -23.58829 -22.22816 -20.35957 -17.43743 -17.11616 -16.38465 -15.11035 -14.63963 -14.37797 -14.05440 -13.83662 -13.65932 -12.85187 -12.62053 -11.68127 -11.39718 -11.23287 -10.99675 -10.80113 -10.48899 -10.01066 -9.97157 -9.82393 -8.89356 -8.53733 -8.12671 -7.43908 -7.14239 -6.10727 -4.24441 1.72476 2.10531 2.73229 3.22443 3.29686 3.34160 4.24157 4.29979 4.45212 5.12567 5.15155 5.48142 5.72009 5.75957 6.21410 6.34401 6.49628 6.84655 7.04343 7.40325 7.74142 7.79854 8.06314 8.15289 8.51041 8.69991 8.93738 9.15888 9.45827 10.87687 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.029028 B = 0.011435 C = 0.009864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.342612 B = 2448.073145 C = 2837.893576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.068 3.932 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.533 4.533 8 H 0.055 0.945 9 C 0.255 3.745 10 H 0.041 0.959 11 N -0.855 5.855 12 C -0.132 4.132 13 C 0.254 3.746 14 N -0.859 5.859 15 C -0.260 4.260 16 C 0.129 3.871 17 N -0.530 5.530 18 C 0.216 3.784 19 Cl -0.023 7.023 20 H 0.265 0.735 21 H 0.345 0.655 22 H 0.327 0.673 23 H 0.394 0.606 24 H 0.409 0.591 25 H 0.126 0.874 26 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.394 -7.316 2.534 8.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.135 4.135 3 Si 0.721 3.279 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.074 0.926 9 C 0.144 3.856 10 H 0.059 0.941 11 N -0.390 5.390 12 C -0.141 4.141 13 C 0.140 3.860 14 N -0.400 5.400 15 C -0.287 4.287 16 C -0.029 4.029 17 N -0.245 5.245 18 C 0.054 3.946 19 Cl 0.005 6.995 20 H 0.074 0.926 21 H 0.159 0.841 22 H 0.144 0.856 23 H 0.221 0.779 24 H 0.241 0.759 25 H 0.144 0.856 26 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.621 -8.010 1.777 8.968 hybrid contribution 0.030 2.285 0.979 2.486 sum 3.651 -5.725 2.757 7.328 Atomic orbital electron populations 1.69786 1.05790 1.27159 1.50695 1.24945 0.94895 0.99136 0.94499 0.86555 0.79900 0.83063 0.78338 1.20491 1.21178 1.19865 1.21723 0.93566 0.90634 1.51343 0.92643 1.17629 0.88801 0.87463 0.91730 0.94124 1.59715 1.12216 1.61653 1.05460 1.20654 1.01984 1.00209 0.91234 1.17719 0.89541 0.91591 0.87187 1.42458 1.46826 1.37937 1.12772 1.21432 1.03631 1.02286 1.01324 1.22013 0.96933 0.96529 0.87450 1.66954 1.20525 1.06424 1.30587 1.20982 0.93504 0.91715 0.88380 1.98304 1.95026 1.67029 1.39137 0.92561 0.84054 0.85642 0.77851 0.75873 0.85574 0.83170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.96 11.76 55.43 0.65 -23.31 15 2 C 0.07 1.78 5.39 -17.82 -0.10 1.68 15 3 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 15 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 7 C -0.53 -13.99 7.62 -34.44 -0.26 -14.25 15 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 15 9 C 0.25 6.16 2.71 -70.01 -0.19 5.97 15 10 H 0.04 1.01 5.92 -51.93 -0.31 0.70 15 11 N -0.86 -20.65 8.81 -6.65 -0.06 -20.71 15 12 C -0.13 -2.92 4.92 -104.25 -0.51 -3.43 15 13 C 0.25 4.72 6.79 -83.61 -0.57 4.16 15 14 N -0.86 -13.27 9.01 32.53 0.29 -12.98 15 15 C -0.26 -4.14 10.00 -39.25 -0.39 -4.53 15 16 C 0.13 2.13 11.17 -17.61 -0.20 1.93 15 17 N -0.53 -10.66 10.34 -10.46 -0.11 -10.77 15 18 C 0.22 4.74 7.10 -17.51 -0.12 4.61 15 19 Cl -0.02 -0.50 24.32 -51.86 -1.26 -1.76 15 20 H 0.26 6.83 8.31 -40.82 -0.34 6.49 15 21 H 0.35 8.72 7.50 -39.29 -0.29 8.43 15 22 H 0.33 7.84 5.19 -39.29 -0.20 7.64 15 23 H 0.39 4.57 8.86 -40.82 -0.36 4.21 15 24 H 0.41 6.81 6.65 -40.82 -0.27 6.53 15 25 H 0.13 1.54 8.06 -52.49 -0.42 1.12 15 26 H 0.15 1.88 8.06 -52.49 -0.42 1.46 15 LS Contribution 237.09 15.07 3.57 3.57 Total: -1.00 -28.54 237.09 -6.10 -34.64 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -1.83 Total: 19.28 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -2.34 Total: -3.86 kcal Atomic # 7 Polarization: -68.54 SS G_CDS: 0.78 Total: -67.77 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.26 Total: -1.76 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -28.54 -6.10 -34.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238585416.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.763 kcal (2) G-P(sol) polarization free energy of solvation -28.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds