Wall clock time and date at job start Mon Mar 30 2020 03:07:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86804 * 119.99750 * 2 1
4 4 H 1.48500 * 109.47137 * 269.99656 * 3 2 1
5 5 H 1.48500 * 109.47480 * 29.99861 * 3 2 1
6 6 H 1.48502 * 109.47146 * 149.99984 * 3 2 1
7 7 C 1.37869 * 120.00338 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00459 * 180.02562 * 7 2 1
9 9 C 1.50706 * 119.99961 * 0.02562 * 7 2 1
10 10 H 1.08998 * 109.47210 * 300.00159 * 9 7 2
11 11 N 1.46903 * 109.46747 * 60.00013 * 9 7 2
12 12 C 1.50695 * 109.47447 * 179.97438 * 9 7 2
13 13 C 1.39435 * 120.46951 * 109.21708 * 12 9 7
14 14 N 1.39174 * 120.85690 * 0.02562 * 13 12 9
15 15 C 1.39494 * 118.28373 * 179.73106 * 13 12 9
16 16 C 1.37876 * 119.09790 * 0.25117 * 15 13 12
17 17 N 1.32007 * 120.86156 * 0.02562 * 16 15 13
18 18 C 1.32105 * 121.88307 * 359.97438 * 17 16 15
19 19 Cl 1.73605 * 119.58830 * 179.97438 * 18 17 16
20 20 H 0.97007 * 120.00329 * 0.02562 * 1 2 3
21 21 H 1.00906 * 110.99984 * 283.89547 * 11 9 7
22 22 H 1.00897 * 111.00296 * 47.85447 * 11 9 7
23 23 H 0.96996 * 119.99669 * 179.71723 * 14 13 12
24 24 H 0.96997 * 119.99857 * 359.43918 * 14 13 12
25 25 H 1.07996 * 120.44671 * 180.27291 * 15 13 12
26 26 H 1.08001 * 119.57272 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0465 -1.4001
5 1 1.4465 2.6528 0.7000
6 1 3.5467 1.4403 0.7000
7 6 2.0045 -1.1939 0.0005
8 1 3.0845 -1.1940 0.0010
9 6 1.2511 -2.4991 0.0005
10 1 0.6241 -2.5567 0.8902
11 7 0.4070 -2.5772 -1.1993
12 6 2.2303 -3.6445 0.0005
13 6 2.3891 -4.4390 1.1354
14 7 1.6493 -4.1929 2.2882
15 6 3.3041 -5.4906 1.0832
16 6 4.0171 -5.7021 -0.0778
17 7 3.8431 -4.9247 -1.1304
18 6 2.9867 -3.9189 -1.1211
19 17 2.8060 -2.9338 -2.5391
20 1 -0.4851 0.8401 -0.0004
21 1 -0.4128 -1.9968 -1.1030
22 1 0.9300 -2.3301 -2.0260
23 1 1.7668 -4.7560 3.0692
24 1 1.0192 -3.4559 2.3120
25 1 3.4517 -6.1306 1.9405
26 1 4.7278 -6.5139 -0.1264
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000238585416.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:07:46
Heat of formation + Delta-G solvation = 27.125378 kcal
Electronic energy + Delta-G solvation = -13741.704200 eV
Core-core repulsion = 11266.813870 eV
Total energy + Delta-G solvation = -2474.890330 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 227.052 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-39.66992 -35.89345 -35.37226 -34.11098 -31.54065 -29.70037 -28.95299 -25.94466
-23.58829 -22.22816 -20.35957 -17.43743 -17.11616 -16.38465 -15.11035 -14.63963
-14.37797 -14.05440 -13.83662 -13.65932 -12.85187 -12.62053 -11.68127 -11.39718
-11.23287 -10.99675 -10.80113 -10.48899 -10.01066 -9.97157 -9.82393 -8.89356
-8.53733 -8.12671 -7.43908 -7.14239 -6.10727 -4.24441 1.72476 2.10531
2.73229 3.22443 3.29686 3.34160 4.24157 4.29979 4.45212 5.12567
5.15155 5.48142 5.72009 5.75957 6.21410 6.34401 6.49628 6.84655
7.04343 7.40325 7.74142 7.79854 8.06314 8.15289 8.51041 8.69991
8.93738 9.15888 9.45827 10.87687
Molecular weight = 227.05amu
Principal moments of inertia in cm(-1)
A = 0.029028 B = 0.011435 C = 0.009864
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 964.342612 B = 2448.073145 C = 2837.893576
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.895 5.895
2 C 0.068 3.932
3 Si 0.894 3.106
4 H -0.279 1.279
5 H -0.286 1.286
6 H -0.274 1.274
7 C -0.533 4.533
8 H 0.055 0.945
9 C 0.255 3.745
10 H 0.041 0.959
11 N -0.855 5.855
12 C -0.132 4.132
13 C 0.254 3.746
14 N -0.859 5.859
15 C -0.260 4.260
16 C 0.129 3.871
17 N -0.530 5.530
18 C 0.216 3.784
19 Cl -0.023 7.023
20 H 0.265 0.735
21 H 0.345 0.655
22 H 0.327 0.673
23 H 0.394 0.606
24 H 0.409 0.591
25 H 0.126 0.874
26 H 0.151 0.849
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.394 -7.316 2.534 8.454
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.534 5.534
2 C -0.135 4.135
3 Si 0.721 3.279
4 H -0.205 1.205
5 H -0.212 1.212
6 H -0.199 1.199
7 C -0.573 4.573
8 H 0.074 0.926
9 C 0.144 3.856
10 H 0.059 0.941
11 N -0.390 5.390
12 C -0.141 4.141
13 C 0.140 3.860
14 N -0.400 5.400
15 C -0.287 4.287
16 C -0.029 4.029
17 N -0.245 5.245
18 C 0.054 3.946
19 Cl 0.005 6.995
20 H 0.074 0.926
21 H 0.159 0.841
22 H 0.144 0.856
23 H 0.221 0.779
24 H 0.241 0.759
25 H 0.144 0.856
26 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges 3.621 -8.010 1.777 8.968
hybrid contribution 0.030 2.285 0.979 2.486
sum 3.651 -5.725 2.757 7.328
Atomic orbital electron populations
1.69786 1.05790 1.27159 1.50695 1.24945 0.94895 0.99136 0.94499
0.86555 0.79900 0.83063 0.78338 1.20491 1.21178 1.19865 1.21723
0.93566 0.90634 1.51343 0.92643 1.17629 0.88801 0.87463 0.91730
0.94124 1.59715 1.12216 1.61653 1.05460 1.20654 1.01984 1.00209
0.91234 1.17719 0.89541 0.91591 0.87187 1.42458 1.46826 1.37937
1.12772 1.21432 1.03631 1.02286 1.01324 1.22013 0.96933 0.96529
0.87450 1.66954 1.20525 1.06424 1.30587 1.20982 0.93504 0.91715
0.88380 1.98304 1.95026 1.67029 1.39137 0.92561 0.84054 0.85642
0.77851 0.75873 0.85574 0.83170
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -23.96 11.76 55.43 0.65 -23.31 15
2 C 0.07 1.78 5.39 -17.82 -0.10 1.68 15
3 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 15
4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15
5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15
6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15
7 C -0.53 -13.99 7.62 -34.44 -0.26 -14.25 15
8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 15
9 C 0.25 6.16 2.71 -70.01 -0.19 5.97 15
10 H 0.04 1.01 5.92 -51.93 -0.31 0.70 15
11 N -0.86 -20.65 8.81 -6.65 -0.06 -20.71 15
12 C -0.13 -2.92 4.92 -104.25 -0.51 -3.43 15
13 C 0.25 4.72 6.79 -83.61 -0.57 4.16 15
14 N -0.86 -13.27 9.01 32.53 0.29 -12.98 15
15 C -0.26 -4.14 10.00 -39.25 -0.39 -4.53 15
16 C 0.13 2.13 11.17 -17.61 -0.20 1.93 15
17 N -0.53 -10.66 10.34 -10.46 -0.11 -10.77 15
18 C 0.22 4.74 7.10 -17.51 -0.12 4.61 15
19 Cl -0.02 -0.50 24.32 -51.86 -1.26 -1.76 15
20 H 0.26 6.83 8.31 -40.82 -0.34 6.49 15
21 H 0.35 8.72 7.50 -39.29 -0.29 8.43 15
22 H 0.33 7.84 5.19 -39.29 -0.20 7.64 15
23 H 0.39 4.57 8.86 -40.82 -0.36 4.21 15
24 H 0.41 6.81 6.65 -40.82 -0.27 6.53 15
25 H 0.13 1.54 8.06 -52.49 -0.42 1.12 15
26 H 0.15 1.88 8.06 -52.49 -0.42 1.46 15
LS Contribution 237.09 15.07 3.57 3.57
Total: -1.00 -28.54 237.09 -6.10 -34.64
By element:
Atomic # 1 Polarization: 21.11 SS G_CDS: -1.83 Total: 19.28 kcal
Atomic # 6 Polarization: -1.52 SS G_CDS: -2.34 Total: -3.86 kcal
Atomic # 7 Polarization: -68.54 SS G_CDS: 0.78 Total: -67.77 kcal
Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal
Atomic # 17 Polarization: -0.50 SS G_CDS: -1.26 Total: -1.76 kcal
Total LS contribution 3.57 Total: 3.57 kcal
Total: -28.54 -6.10 -34.64 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238585416.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.763 kcal
(2) G-P(sol) polarization free energy of solvation -28.538 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.224 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.099 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.637 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.125 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds