Wall clock time and date at job start Mon Mar 30 2020 03:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99750 * 2 1 4 4 H 1.48500 * 109.47137 * 269.99656 * 3 2 1 5 5 H 1.48500 * 109.47480 * 29.99861 * 3 2 1 6 6 H 1.48502 * 109.47146 * 149.99984 * 3 2 1 7 7 C 1.37869 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00459 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99961 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47210 * 300.00159 * 9 7 2 11 11 N 1.46903 * 109.46747 * 60.00013 * 9 7 2 12 12 C 1.50695 * 109.47447 * 179.97438 * 9 7 2 13 13 C 1.39435 * 120.46951 * 109.21708 * 12 9 7 14 14 N 1.39174 * 120.85690 * 0.02562 * 13 12 9 15 15 C 1.39494 * 118.28373 * 179.73106 * 13 12 9 16 16 C 1.37876 * 119.09790 * 0.25117 * 15 13 12 17 17 N 1.32007 * 120.86156 * 0.02562 * 16 15 13 18 18 C 1.32105 * 121.88307 * 359.97438 * 17 16 15 19 19 Cl 1.73605 * 119.58830 * 179.97438 * 18 17 16 20 20 H 0.97007 * 120.00329 * 0.02562 * 1 2 3 21 21 H 1.00906 * 110.99984 * 283.89547 * 11 9 7 22 22 H 1.00897 * 111.00296 * 47.85447 * 11 9 7 23 23 H 0.96996 * 119.99669 * 179.71723 * 14 13 12 24 24 H 0.96997 * 119.99857 * 359.43918 * 14 13 12 25 25 H 1.07996 * 120.44671 * 180.27291 * 15 13 12 26 26 H 1.08001 * 119.57272 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8902 11 7 0.4070 -2.5772 -1.1993 12 6 2.2303 -3.6445 0.0005 13 6 2.3891 -4.4390 1.1354 14 7 1.6493 -4.1929 2.2882 15 6 3.3041 -5.4906 1.0832 16 6 4.0171 -5.7021 -0.0778 17 7 3.8431 -4.9247 -1.1304 18 6 2.9867 -3.9189 -1.1211 19 17 2.8060 -2.9338 -2.5391 20 1 -0.4851 0.8401 -0.0004 21 1 -0.4128 -1.9968 -1.1030 22 1 0.9300 -2.3301 -2.0260 23 1 1.7668 -4.7560 3.0692 24 1 1.0192 -3.4559 2.3120 25 1 3.4517 -6.1306 1.9405 26 1 4.7278 -6.5139 -0.1264 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238585416.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:46 Heat of formation + Delta-G solvation = 5.287233 kcal Electronic energy + Delta-G solvation = -13742.651173 eV Core-core repulsion = 11266.813870 eV Total energy + Delta-G solvation = -2475.837303 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.052 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.11331 -37.48939 -36.98286 -35.72329 -33.42527 -31.15994 -30.46295 -27.88205 -25.23729 -23.66786 -22.03338 -19.02267 -18.50937 -18.19263 -16.88037 -16.24161 -15.93401 -15.50002 -15.35136 -15.21531 -14.66173 -14.20609 -13.46057 -13.09895 -12.90882 -12.78435 -12.55846 -12.05692 -11.82707 -11.77434 -11.54395 -10.72871 -10.22371 -9.59415 -9.15159 -8.77975 -8.08611 -6.29713 0.28507 0.67748 1.17782 1.35451 1.39224 1.47201 2.38059 2.94704 2.99237 3.11324 3.85515 4.10792 4.26983 4.44917 4.78204 4.81048 4.95433 5.15939 5.56227 5.67734 5.72097 6.12439 6.44458 6.68684 6.96808 6.98996 7.07777 7.19935 7.43409 8.85736 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.029028 B = 0.011435 C = 0.009864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.342612 B = 2448.073145 C = 2837.893576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.029 3.971 3 Si 0.944 3.056 4 H -0.280 1.280 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.038 0.962 9 C 0.260 3.740 10 H 0.029 0.971 11 N -0.851 5.851 12 C -0.170 4.170 13 C 0.247 3.753 14 N -0.847 5.847 15 C -0.246 4.246 16 C 0.131 3.869 17 N -0.551 5.551 18 C 0.197 3.803 19 Cl -0.038 7.038 20 H 0.266 0.734 21 H 0.335 0.665 22 H 0.326 0.674 23 H 0.414 0.586 24 H 0.403 0.597 25 H 0.173 0.827 26 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.392 -8.578 3.744 10.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.172 4.172 3 Si 0.771 3.229 4 H -0.206 1.206 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.056 0.944 9 C 0.149 3.851 10 H 0.047 0.953 11 N -0.385 5.385 12 C -0.179 4.179 13 C 0.131 3.869 14 N -0.388 5.388 15 C -0.272 4.272 16 C -0.026 4.026 17 N -0.266 5.266 18 C 0.036 3.964 19 Cl -0.010 7.010 20 H 0.075 0.925 21 H 0.148 0.852 22 H 0.143 0.857 23 H 0.245 0.755 24 H 0.234 0.766 25 H 0.190 0.810 26 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 4.626 -9.296 3.018 10.813 hybrid contribution -0.244 2.564 0.672 2.662 sum 4.382 -6.733 3.690 8.840 Atomic orbital electron populations 1.69859 1.06508 1.27680 1.51193 1.25522 0.95612 1.01532 0.94492 0.85768 0.78813 0.80255 0.78083 1.20599 1.20494 1.20036 1.21825 0.92763 0.92053 1.51108 0.94375 1.17475 0.88825 0.87877 0.90963 0.95284 1.59758 1.11931 1.61100 1.05741 1.20555 1.02973 1.01232 0.93151 1.17977 0.90232 0.91792 0.86887 1.42410 1.45813 1.37798 1.12737 1.21877 1.01512 1.01232 1.02543 1.22869 0.96825 0.96306 0.86570 1.66997 1.20633 1.06675 1.32344 1.21066 0.94617 0.92638 0.88126 1.98281 1.95134 1.67664 1.39890 0.92503 0.85195 0.85662 0.75474 0.76610 0.80987 0.78688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.17 11.76 21.44 0.25 -48.92 15 2 C 0.03 1.52 5.39 84.65 0.46 1.98 15 3 Si 0.94 43.01 29.54 68.60 2.03 45.03 15 4 H -0.28 -12.73 7.11 99.48 0.71 -12.02 15 5 H -0.28 -12.35 7.11 99.48 0.71 -11.65 15 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 7 C -0.54 -28.54 7.62 25.60 0.19 -28.35 15 8 H 0.04 2.12 7.74 -2.91 -0.02 2.09 15 9 C 0.26 12.68 2.71 43.42 0.12 12.80 15 10 H 0.03 1.47 5.92 -2.39 -0.01 1.46 15 11 N -0.85 -41.84 8.81 -174.95 -1.54 -43.38 15 12 C -0.17 -7.43 4.92 -19.63 -0.10 -7.52 15 13 C 0.25 8.66 6.79 38.57 0.26 8.93 15 14 N -0.85 -24.37 9.01 -51.00 -0.46 -24.83 15 15 C -0.25 -6.81 10.00 22.49 0.22 -6.59 15 16 C 0.13 3.86 11.17 84.58 0.94 4.80 15 17 N -0.55 -21.23 10.34 -187.00 -1.93 -23.16 15 18 C 0.20 8.57 7.10 84.60 0.60 9.17 15 19 Cl -0.04 -1.66 24.32 -2.72 -0.07 -1.72 15 20 H 0.27 13.74 8.31 -92.70 -0.77 12.97 15 21 H 0.34 17.30 7.50 -89.69 -0.67 16.63 15 22 H 0.33 15.99 5.19 -89.70 -0.47 15.53 15 23 H 0.41 8.29 8.86 -92.71 -0.82 7.46 15 24 H 0.40 13.03 6.65 -92.71 -0.62 12.42 15 25 H 0.17 3.14 8.06 -2.91 -0.02 3.12 15 26 H 0.20 3.85 8.06 -2.91 -0.02 3.82 15 Total: -1.00 -61.42 237.09 -0.33 -61.74 By element: Atomic # 1 Polarization: 41.34 SS G_CDS: -1.31 Total: 40.03 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 2.70 Total: -4.79 kcal Atomic # 7 Polarization: -136.61 SS G_CDS: -3.68 Total: -140.29 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -0.07 Total: -1.72 kcal Total: -61.42 -0.33 -61.74 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238585416.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.031 kcal (2) G-P(sol) polarization free energy of solvation -61.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds