Wall clock time and date at job start Mon Mar 30 2020 03:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00347 * 2 1 4 4 H 1.48504 * 109.46942 * 239.99729 * 3 2 1 5 5 H 1.48504 * 109.46799 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47243 * 119.99838 * 3 2 1 7 7 C 1.37881 * 119.99410 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99545 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00428 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47118 * 300.00248 * 9 7 2 11 11 N 1.46906 * 109.46797 * 60.00202 * 9 7 2 12 12 C 1.50694 * 109.47441 * 179.97438 * 9 7 2 13 13 C 1.37878 * 120.45619 * 265.00490 * 12 9 7 14 14 N 1.32004 * 120.86160 * 179.97438 * 13 12 9 15 15 C 1.32097 * 121.88943 * 359.97438 * 14 13 12 16 16 Cl 1.73603 * 119.59399 * 179.97438 * 15 14 13 17 17 C 1.38047 * 120.81429 * 0.02562 * 15 14 13 18 18 C 1.39432 * 119.05551 * 359.97433 * 17 15 14 19 19 N 1.39171 * 120.85842 * 180.02562 * 18 17 15 20 20 H 0.97004 * 119.99647 * 0.02562 * 1 2 3 21 21 H 1.00901 * 110.99561 * 296.04642 * 11 9 7 22 22 H 1.00893 * 110.99734 * 60.00323 * 11 9 7 23 23 H 1.08006 * 119.56626 * 0.25370 * 13 12 9 24 24 H 1.07995 * 120.47115 * 180.02562 * 17 15 14 25 25 H 0.96997 * 119.99648 * 0.02562 * 19 18 17 26 26 H 0.97002 * 120.00024 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 1 0.6245 -2.5563 0.8919 11 7 0.4059 -2.5778 -1.1975 12 6 2.2300 -3.6447 0.0015 13 6 2.6046 -4.2437 -1.1826 14 7 3.4620 -5.2473 -1.1921 15 6 3.9961 -5.7194 -0.0801 16 17 5.1174 -7.0423 -0.1618 17 6 3.6729 -5.1746 1.1465 18 6 2.7707 -4.1128 1.1992 19 7 2.4187 -3.5349 2.4153 20 1 -0.4850 0.8401 -0.0004 21 1 -0.3014 -1.8582 -1.1891 22 1 0.9636 -2.5270 -2.0367 23 1 2.1944 -3.8841 -2.1148 24 1 4.1132 -5.5646 2.0522 25 1 2.8026 -3.8700 3.2407 26 1 1.7895 -2.7969 2.4376 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238597454.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:33 Heat of formation + Delta-G solvation = -0.909833 kcal Electronic energy + Delta-G solvation = -13413.139013 eV Core-core repulsion = 10937.032986 eV Total energy + Delta-G solvation = -2476.106028 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.052 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.18134 -37.75070 -36.73287 -35.97453 -33.57323 -31.12978 -30.39355 -28.04627 -25.28503 -23.75055 -21.98088 -18.73144 -18.59971 -18.49457 -16.93304 -16.20203 -15.85699 -15.55719 -15.37630 -15.22834 -14.65061 -14.32718 -13.33812 -13.22116 -12.86724 -12.75858 -12.56987 -12.19957 -12.11559 -11.95416 -11.74025 -10.76180 -10.34613 -9.71106 -9.22841 -8.78629 -8.09264 -6.36321 0.22515 0.61690 0.92360 1.38899 1.42482 1.48425 2.37042 2.91419 2.98930 3.06734 3.75084 4.00939 4.26742 4.40615 4.65315 4.81744 4.87170 5.02870 5.63464 5.64871 5.66038 6.07036 6.44454 6.62848 6.91803 6.95836 7.04270 7.13535 7.40491 8.82001 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.041599 B = 0.007321 C = 0.007167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.935880 B = 3823.852791 C = 3905.928823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.032 3.968 3 Si 0.951 3.049 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.552 4.552 8 H 0.041 0.959 9 C 0.263 3.737 10 H 0.026 0.974 11 N -0.845 5.845 12 C -0.176 4.176 13 C 0.143 3.857 14 N -0.543 5.543 15 C 0.186 3.814 16 Cl -0.036 7.036 17 C -0.237 4.237 18 C 0.258 3.742 19 N -0.842 5.842 20 H 0.268 0.732 21 H 0.348 0.652 22 H 0.319 0.681 23 H 0.160 0.840 24 H 0.163 0.837 25 H 0.411 0.589 26 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.604 -7.010 3.961 9.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.169 4.169 3 Si 0.778 3.222 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.592 4.592 8 H 0.060 0.940 9 C 0.152 3.848 10 H 0.043 0.957 11 N -0.375 5.375 12 C -0.183 4.183 13 C -0.010 4.010 14 N -0.258 5.258 15 C 0.021 3.979 16 Cl -0.008 7.008 17 C -0.264 4.264 18 C 0.141 3.859 19 N -0.381 5.381 20 H 0.077 0.923 21 H 0.163 0.837 22 H 0.129 0.871 23 H 0.177 0.823 24 H 0.181 0.819 25 H 0.242 0.758 26 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 5.538 -8.106 3.433 10.401 hybrid contribution 0.454 2.422 0.772 2.582 sum 5.993 -5.684 4.205 9.269 Atomic orbital electron populations 1.69804 1.06626 1.28032 1.50409 1.25579 0.95571 1.01702 0.94070 0.85722 0.78417 0.79594 0.78487 1.20484 1.20927 1.20017 1.21880 0.92962 0.92038 1.52324 0.94038 1.17466 0.88354 0.87852 0.91096 0.95650 1.59492 1.18260 1.55522 1.04222 1.20943 1.03300 1.01162 0.92929 1.22128 0.91210 0.89595 0.98116 1.66987 1.13200 1.14943 1.30697 1.21321 0.94287 0.92223 0.90096 1.98345 1.59010 1.44769 1.98694 1.21184 1.05439 1.01209 0.98567 1.17795 0.90641 0.90107 0.87329 1.42356 1.51410 1.39686 1.04665 0.92254 0.83675 0.87095 0.82257 0.81918 0.75768 0.76097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.66 11.54 21.45 0.25 -46.41 15 2 C 0.03 1.59 5.38 84.66 0.46 2.05 15 3 Si 0.95 40.64 29.54 68.60 2.03 42.67 15 4 H -0.28 -12.01 7.11 99.48 0.71 -11.31 15 5 H -0.28 -11.95 7.11 99.48 0.71 -11.24 15 6 H -0.27 -11.58 7.11 99.48 0.71 -10.88 15 7 C -0.55 -27.43 8.71 25.60 0.22 -27.20 15 8 H 0.04 2.14 7.74 -2.91 -0.02 2.12 15 9 C 0.26 12.08 2.44 43.42 0.11 12.19 15 10 H 0.03 1.26 6.92 -2.39 -0.02 1.25 15 11 N -0.85 -37.98 8.80 -174.95 -1.54 -39.52 15 12 C -0.18 -7.23 5.02 -19.65 -0.10 -7.33 15 13 C 0.14 5.76 10.43 84.58 0.88 6.64 15 14 N -0.54 -21.04 10.34 -187.00 -1.93 -22.98 15 15 C 0.19 6.37 7.27 84.61 0.61 6.99 15 16 Cl -0.04 -1.03 29.10 -2.72 -0.08 -1.11 15 17 C -0.24 -7.45 9.76 22.51 0.22 -7.23 15 18 C 0.26 9.13 6.79 38.57 0.26 9.39 15 19 N -0.84 -24.93 9.00 -51.00 -0.46 -25.39 15 20 H 0.27 13.26 8.31 -92.71 -0.77 12.49 15 21 H 0.35 16.82 7.08 -89.69 -0.63 16.18 15 22 H 0.32 13.61 7.23 -89.70 -0.65 12.96 15 23 H 0.16 6.17 6.30 -2.91 -0.02 6.15 15 24 H 0.16 3.94 8.06 -2.91 -0.02 3.92 15 25 H 0.41 8.87 8.86 -92.71 -0.82 8.05 15 26 H 0.41 13.48 7.09 -92.71 -0.66 12.82 15 Total: -1.00 -54.16 243.02 -0.56 -54.72 By element: Atomic # 1 Polarization: 44.01 SS G_CDS: -1.49 Total: 42.52 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 2.66 Total: -4.50 kcal Atomic # 7 Polarization: -130.61 SS G_CDS: -3.68 Total: -134.29 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -54.16 -0.56 -54.72 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238597454.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.813 kcal (2) G-P(sol) polarization free energy of solvation -54.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds