Wall clock time and date at job start Mon Mar 30 2020 02:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99894 * 2 1 4 4 H 1.48498 * 109.47242 * 269.99763 * 3 2 1 5 5 H 1.48498 * 109.47047 * 30.00125 * 3 2 1 6 6 H 1.48503 * 109.46930 * 150.00064 * 3 2 1 7 7 C 1.37876 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00343 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99847 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.47140 * 59.99880 * 9 7 2 11 11 N 1.46893 * 109.47200 * 299.99888 * 9 7 2 12 12 C 1.50704 * 109.46970 * 179.97438 * 9 7 2 13 13 C 1.38296 * 119.97470 * 99.99968 * 12 9 7 14 14 C 1.38228 * 120.11831 * 179.97438 * 13 12 9 15 15 C 1.38201 * 120.07796 * 0.02562 * 14 13 12 16 16 C 1.38664 * 119.95516 * 359.97438 * 15 14 13 17 17 O 1.35931 * 120.05980 * 180.02562 * 16 15 14 18 18 C 1.38216 * 119.98125 * 279.99888 * 12 9 7 19 19 Cl 1.73594 * 120.03698 * 0.28216 * 18 12 9 20 20 H 0.96997 * 119.99933 * 0.02562 * 1 2 3 21 21 H 1.00899 * 111.00227 * 300.00195 * 11 9 7 22 22 H 1.00900 * 111.00091 * 63.95420 * 11 9 7 23 23 H 1.08000 * 119.94032 * 0.02562 * 13 12 9 24 24 H 1.07997 * 119.96366 * 180.02562 * 14 13 12 25 25 H 1.07996 * 120.02211 * 179.97438 * 15 14 13 26 26 H 0.96698 * 113.99171 * 269.97537 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 0.0000 10 1 3.8746 -0.6808 0.8905 11 7 4.0017 -0.5008 -1.1987 12 6 4.0139 -2.6149 -0.0001 13 6 4.4408 -3.1967 -1.1798 14 6 4.9026 -4.4996 -1.1833 15 6 4.9385 -5.2248 -0.0074 16 6 4.5113 -4.6445 1.1773 17 8 4.5461 -5.3557 2.3352 18 6 4.0477 -3.3356 1.1788 19 17 3.5050 -2.6075 2.6583 20 1 -0.4850 0.8400 -0.0004 21 1 3.6785 -0.9577 -2.0382 22 1 3.7323 0.4715 -1.1897 23 1 4.4141 -2.6319 -2.0999 24 1 5.2358 -4.9513 -2.1059 25 1 5.2991 -6.2428 -0.0112 26 1 3.7360 -5.8514 2.5167 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238622240.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:41 Heat of formation + Delta-G solvation = -42.601602 kcal Electronic energy + Delta-G solvation = -13561.766999 eV Core-core repulsion = 11051.560329 eV Total energy + Delta-G solvation = -2510.206670 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.045 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.78051 -38.25662 -37.20138 -36.27583 -33.93210 -31.48444 -30.29635 -28.16425 -24.89410 -23.43145 -21.82332 -19.19307 -18.95988 -17.90783 -17.29241 -16.60933 -16.23660 -15.92450 -15.02309 -14.91864 -14.32827 -14.08029 -13.75082 -13.28637 -12.86998 -12.80765 -12.51646 -12.24254 -12.11587 -11.87868 -11.75676 -11.14386 -10.89542 -9.75128 -9.46444 -9.29708 -8.37956 -6.44232 0.23896 0.37988 1.21227 1.31948 1.37709 1.39517 2.21225 2.67814 2.94537 3.23106 3.82811 4.07820 4.17142 4.39509 4.55660 4.73397 4.76302 5.11599 5.30801 5.37640 5.48442 5.60133 5.87384 6.04412 6.35383 6.56610 6.69606 6.77041 7.20750 8.78248 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.033861 B = 0.010610 C = 0.009148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.703802 B = 2638.508436 C = 3060.186004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.022 3.978 3 Si 0.927 3.073 4 H -0.250 1.250 5 H -0.294 1.294 6 H -0.253 1.253 7 C -0.526 4.526 8 H 0.033 0.967 9 C 0.213 3.787 10 H 0.042 0.958 11 N -0.837 5.837 12 C -0.039 4.039 13 C -0.120 4.120 14 C -0.092 4.092 15 C -0.145 4.145 16 C 0.104 3.896 17 O -0.496 6.496 18 C -0.086 4.086 19 Cl -0.074 7.074 20 H 0.267 0.733 21 H 0.341 0.659 22 H 0.318 0.682 23 H 0.143 0.857 24 H 0.168 0.832 25 H 0.165 0.835 26 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.671 -8.466 -1.443 12.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.177 4.177 3 Si 0.752 3.248 4 H -0.175 1.175 5 H -0.221 1.221 6 H -0.177 1.177 7 C -0.566 4.566 8 H 0.052 0.948 9 C 0.103 3.897 10 H 0.060 0.940 11 N -0.371 5.371 12 C -0.040 4.040 13 C -0.139 4.139 14 C -0.110 4.110 15 C -0.164 4.164 16 C 0.059 3.941 17 O -0.308 6.308 18 C -0.113 4.113 19 Cl -0.045 7.045 20 H 0.077 0.923 21 H 0.155 0.845 22 H 0.133 0.867 23 H 0.160 0.840 24 H 0.185 0.815 25 H 0.182 0.818 26 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 10.759 -8.243 -0.979 13.589 hybrid contribution -1.920 1.065 0.294 2.215 sum 8.839 -7.178 -0.685 11.407 Atomic orbital electron populations 1.70026 1.07929 1.28097 1.51509 1.25749 0.95450 1.02477 0.94025 0.86122 0.79179 0.79564 0.79886 1.17465 1.22111 1.17749 1.21547 0.90978 0.93115 1.50931 0.94827 1.18254 0.91532 0.88925 0.91015 0.94033 1.59692 1.66200 1.05568 1.05677 1.19845 0.95525 0.96394 0.92273 1.21212 0.99278 0.96048 0.97351 1.21475 0.97272 0.93021 0.99189 1.21578 1.02481 1.02008 0.90314 1.18295 1.00006 0.88536 0.87312 1.84761 1.43356 1.64836 1.37826 1.21490 1.06040 0.95521 0.88291 1.98323 1.88717 1.83347 1.34153 0.92339 0.84491 0.86651 0.83972 0.81464 0.81778 0.73601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.80 13.96 21.45 0.30 -56.50 15 2 C 0.02 1.25 5.47 84.65 0.46 1.71 15 3 Si 0.93 42.78 24.61 68.60 1.69 44.47 15 4 H -0.25 -10.47 7.01 99.48 0.70 -9.77 15 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 15 6 H -0.25 -11.40 6.54 99.48 0.65 -10.75 15 7 C -0.53 -28.92 9.05 25.60 0.23 -28.69 15 8 H 0.03 2.09 7.98 -2.91 -0.02 2.06 15 9 C 0.21 9.91 1.93 43.43 0.08 10.00 15 10 H 0.04 2.09 6.42 -2.39 -0.02 2.08 15 11 N -0.84 -34.59 8.62 -174.95 -1.51 -36.10 15 12 C -0.04 -1.60 5.03 -19.85 -0.10 -1.70 15 13 C -0.12 -4.01 9.25 22.28 0.21 -3.80 15 14 C -0.09 -2.35 10.04 22.26 0.22 -2.13 15 15 C -0.15 -3.74 9.99 22.36 0.22 -3.52 15 16 C 0.10 3.33 6.70 22.52 0.15 3.48 15 17 O -0.50 -13.74 12.97 -92.77 -1.20 -14.94 15 18 C -0.09 -3.38 6.32 22.41 0.14 -3.24 15 19 Cl -0.07 -3.06 26.86 -2.72 -0.07 -3.14 15 20 H 0.27 15.24 8.31 -92.71 -0.77 14.47 15 21 H 0.34 12.95 7.28 -89.69 -0.65 12.30 15 22 H 0.32 13.31 4.29 -89.69 -0.39 12.92 15 23 H 0.14 4.34 6.24 -2.91 -0.02 4.32 15 24 H 0.17 2.86 8.06 -2.91 -0.02 2.83 15 25 H 0.16 3.02 8.06 -2.91 -0.02 3.00 15 26 H 0.41 7.76 9.06 -74.06 -0.67 7.09 15 Total: -1.00 -66.85 237.16 0.30 -66.55 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: -0.53 Total: 27.55 kcal Atomic # 6 Polarization: -29.51 SS G_CDS: 1.62 Total: -27.89 kcal Atomic # 7 Polarization: -91.40 SS G_CDS: -1.21 Total: -92.60 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -1.20 Total: -14.94 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.69 Total: 44.47 kcal Atomic # 17 Polarization: -3.06 SS G_CDS: -0.07 Total: -3.14 kcal Total: -66.85 0.30 -66.55 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238622240.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.950 kcal (2) G-P(sol) polarization free energy of solvation -66.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds