Wall clock time and date at job start Mon Mar 30 2020 03:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46953 * 179.97438 * 10 9 7 12 12 O 1.32955 * 126.42203 * 275.02642 * 11 10 9 13 13 N 1.20674 * 113.85050 * 179.97438 * 12 11 10 14 14 H 0.96998 * 124.27447 * 179.97438 * 13 12 11 15 15 C 1.34977 * 111.44455 * 0.02562 * 13 12 11 16 16 O 1.21903 * 127.66930 * 180.02562 * 15 13 12 17 17 C 1.38620 * 126.42406 * 94.71062 * 11 10 9 18 18 C 1.46978 * 128.55481 * 359.97438 * 17 11 10 19 19 O 1.21565 * 119.99769 * 0.02562 * 18 17 11 20 20 O 1.34790 * 120.00179 * 179.97438 * 18 17 11 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 23 23 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 24 24 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 25 25 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 26 26 H 0.96703 * 117.00072 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4918 -4.9672 -0.0033 12 8 1.0163 -5.6046 1.0622 13 7 0.4468 -6.6357 0.8001 14 1 0.0432 -7.2200 1.4608 15 6 0.4436 -6.8737 -0.5285 16 8 -0.0469 -7.8238 -1.1139 17 6 1.1592 -5.7251 -1.1152 18 6 1.4497 -5.4524 -2.5300 19 8 2.0591 -4.4480 -2.8427 20 8 1.0414 -6.3164 -3.4806 21 1 -0.4849 0.8400 0.0004 22 1 0.6240 -2.5575 0.8880 23 1 0.6247 -2.5562 -0.8920 24 1 2.8720 -3.6035 -0.8927 25 1 2.8719 -3.6051 0.8873 26 1 1.2561 -6.0945 -4.3970 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259598678.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:50 Heat of formation + Delta-G solvation = -94.148960 kcal Electronic energy + Delta-G solvation = -15431.791436 eV Core-core repulsion = 12478.640341 eV Total energy + Delta-G solvation = -2953.151096 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.067 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -46.25050 -40.94838 -39.29717 -37.21488 -36.43396 -34.67331 -33.22273 -32.15306 -27.83576 -26.51002 -23.99769 -23.08366 -21.71858 -20.51963 -19.28494 -19.00193 -18.52101 -17.78150 -16.84388 -16.51784 -16.46168 -15.94426 -15.30000 -15.05568 -14.72139 -14.32898 -14.24714 -13.38610 -12.87069 -12.62531 -12.53263 -12.23190 -11.94058 -11.63848 -11.39956 -11.23014 -10.90354 -10.54181 -9.94317 -8.18900 -6.29379 -0.40923 0.78851 1.00627 1.46629 1.48059 1.58202 1.67917 1.97543 2.41413 2.47914 3.17213 3.34887 3.40463 4.00673 4.46481 4.50136 4.64268 4.92970 5.23566 5.44113 5.56119 5.60659 5.80004 6.16126 6.33683 6.83876 6.85291 7.04892 7.40060 8.93303 Molecular weight = 227.07amu Principal moments of inertia in cm(-1) A = 0.036543 B = 0.007124 C = 0.006404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.027381 B = 3929.173164 C = 4371.316687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.256 1.256 7 C -0.536 4.536 8 H 0.074 0.926 9 C 0.036 3.964 10 C -0.045 4.045 11 C 0.221 3.779 12 O 0.031 5.969 13 N -0.535 5.535 14 H 0.482 0.518 15 C 0.512 3.488 16 O -0.536 6.536 17 C -0.390 4.390 18 C 0.575 3.425 19 O -0.534 6.534 20 O -0.502 6.502 21 H 0.263 0.737 22 H 0.011 0.989 23 H -0.008 1.008 24 H 0.115 0.885 25 H 0.122 0.878 26 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.736 -10.861 1.838 11.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.180 1.180 7 C -0.574 4.574 8 H 0.092 0.908 9 C -0.001 4.001 10 C -0.083 4.083 11 C 0.160 3.840 12 O 0.022 5.978 13 N -0.230 5.230 14 H 0.340 0.660 15 C 0.307 3.693 16 O -0.417 6.417 17 C -0.397 4.397 18 C 0.421 3.579 19 O -0.427 6.427 20 O -0.315 6.315 21 H 0.072 0.928 22 H 0.029 0.971 23 H 0.010 0.990 24 H 0.133 0.867 25 H 0.140 0.860 26 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 3.354 -11.134 2.108 11.818 hybrid contribution -0.162 0.714 -0.541 0.910 sum 3.191 -10.420 1.567 11.010 Atomic orbital electron populations 1.70090 1.07882 1.27869 1.51518 1.25921 0.95665 1.03327 0.94660 0.85438 0.78931 0.78408 0.78220 1.20460 1.21117 1.17967 1.21546 0.94058 0.91143 1.50684 0.90779 1.18938 0.93828 0.91371 0.95996 1.21028 0.97455 0.82982 1.06787 1.24997 0.85200 0.91245 0.82538 1.83623 1.59134 1.23901 1.31158 1.43353 1.54150 1.14835 1.10704 0.65990 1.19030 0.81623 0.86921 0.81760 1.90938 1.51053 1.34115 1.65594 1.20982 1.22060 1.03893 0.92809 1.18831 0.74682 0.79440 0.84898 1.90958 1.40598 1.28115 1.82985 1.84625 1.74710 1.50603 1.21590 0.92786 0.97099 0.98960 0.86745 0.85990 0.70709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.79 13.29 21.45 0.28 -54.50 15 2 C 0.00 0.13 5.46 84.66 0.46 0.59 15 3 Si 0.97 42.33 29.54 68.60 2.03 44.36 15 4 H -0.28 -12.13 7.11 99.48 0.71 -11.42 15 5 H -0.29 -12.37 7.11 99.48 0.71 -11.66 15 6 H -0.26 -10.45 7.11 99.48 0.71 -9.74 15 7 C -0.54 -28.17 9.11 25.60 0.23 -27.93 15 8 H 0.07 3.62 7.74 -2.91 -0.02 3.60 15 9 C 0.04 1.73 4.96 29.85 0.15 1.88 15 10 C -0.05 -1.60 5.37 29.85 0.16 -1.44 15 11 C 0.22 7.06 6.79 25.78 0.18 7.24 15 12 O 0.03 0.80 10.99 81.65 0.90 1.69 15 13 N -0.54 -12.52 6.74 -175.34 -1.18 -13.70 15 14 H 0.48 6.95 8.96 -92.71 -0.83 6.12 15 15 C 0.51 16.49 8.72 86.65 0.76 17.24 15 16 O -0.54 -20.22 17.94 -5.00 -0.09 -20.31 15 17 C -0.39 -13.49 6.51 -18.45 -0.12 -13.61 15 18 C 0.58 20.59 8.32 70.11 0.58 21.17 15 19 O -0.53 -21.60 15.90 19.63 0.31 -21.29 15 20 O -0.50 -14.94 13.27 -57.00 -0.76 -15.69 15 21 H 0.26 14.62 8.31 -92.71 -0.77 13.85 15 22 H 0.01 0.53 8.14 -2.39 -0.02 0.51 15 23 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 15 24 H 0.11 4.25 6.53 -2.39 -0.02 4.24 15 25 H 0.12 3.56 8.14 -2.39 -0.02 3.54 15 26 H 0.43 7.93 9.11 -74.06 -0.67 7.25 15 Total: -1.00 -72.11 249.31 3.64 -68.47 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -0.25 Total: 5.82 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 2.40 Total: 5.14 kcal Atomic # 7 Polarization: -67.30 SS G_CDS: -0.90 Total: -68.20 kcal Atomic # 8 Polarization: -55.96 SS G_CDS: 0.36 Total: -55.59 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -72.11 3.64 -68.47 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259598678.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.677 kcal (2) G-P(sol) polarization free energy of solvation -72.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds