Wall clock time and date at job start Mon Mar 30 2020 03:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36938 * 120.00018 * 2 1 4 4 H 1.07997 * 119.99610 * 202.16364 * 3 2 1 5 5 C 1.38804 * 120.00107 * 22.16129 * 3 2 1 6 6 N 1.31623 * 119.99950 * 11.35131 * 5 3 2 7 7 Si 1.86801 * 119.99931 * 191.35271 * 5 3 2 8 8 H 1.48499 * 109.47250 * 60.00235 * 7 5 3 9 9 H 1.48500 * 109.47198 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47331 * 299.99843 * 7 5 3 11 11 C 1.46503 * 119.99821 * 179.97438 * 2 1 3 12 12 C 1.50699 * 109.47358 * 270.00501 * 11 2 1 13 13 N 1.30647 * 128.64246 * 270.02778 * 12 11 2 14 14 O 1.20833 * 109.62726 * 179.97438 * 13 12 11 15 15 N 1.20903 * 115.91618 * 359.69082 * 14 13 12 16 16 C 1.31635 * 109.17119 * 0.50103 * 15 14 13 17 17 C 1.48179 * 128.71261 * 179.82392 * 16 15 14 18 18 O 1.21418 * 119.99846 * 179.67498 * 17 16 15 19 19 O 1.34657 * 120.00165 * 359.39443 * 17 16 15 20 20 H 1.08998 * 109.47141 * 273.97692 * 1 2 3 21 21 H 1.09001 * 109.46482 * 33.98123 * 1 2 3 22 22 H 1.09003 * 109.46948 * 153.97535 * 1 2 3 23 23 H 0.97007 * 119.99361 * 179.97438 * 6 5 3 24 24 H 1.08995 * 109.46783 * 150.00441 * 11 2 1 25 25 H 1.08998 * 109.47016 * 30.00465 * 11 2 1 26 26 H 0.96703 * 116.99786 * 180.27550 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1699 1.2204 -0.3529 5 6 1.5327 2.3436 0.4534 6 7 0.3812 2.2708 1.0870 7 14 2.3363 4.0050 0.1645 8 1 2.4950 4.2310 -1.2946 9 1 1.4831 5.0747 0.7416 10 1 3.6698 4.0301 0.8172 11 6 2.1975 -1.2688 0.0006 12 6 2.4486 -1.7033 1.4215 13 7 3.4680 -1.4279 2.1908 14 8 3.3172 -1.9539 3.2682 15 7 2.2993 -2.5913 3.4072 16 6 1.6042 -2.5448 2.2903 17 6 0.2982 -3.1745 1.9847 18 8 -0.2084 -3.0219 0.8918 19 8 -0.3242 -3.9206 2.9170 20 1 -0.3633 0.0713 1.0252 21 1 -0.3632 0.8522 -0.5744 22 1 -0.3633 -0.9235 -0.4509 23 1 -0.0498 3.0799 1.4042 24 1 3.1499 -1.1386 -0.5132 25 1 1.6085 -2.0286 -0.5130 26 1 -1.1721 -4.3144 2.6699 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259721404.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:37 Heat of formation + Delta-G solvation = 53.714090 kcal Electronic energy + Delta-G solvation = -15908.824999 eV Core-core repulsion = 12994.378478 eV Total energy + Delta-G solvation = -2914.446521 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.074 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -46.33030 -39.97920 -36.38827 -35.86423 -34.17871 -33.89319 -31.27935 -27.53604 -25.99031 -25.94849 -22.81660 -21.76533 -20.69919 -18.52974 -18.06255 -17.76041 -16.85795 -16.47799 -15.53606 -14.97445 -14.05727 -13.70228 -13.58525 -13.37079 -12.47358 -11.87582 -11.66044 -11.39781 -11.22142 -11.05090 -10.87951 -10.73413 -10.63514 -10.52691 -10.15880 -10.08584 -9.76670 -8.70892 -7.05688 -5.90710 -3.36633 0.95194 1.94727 2.57632 2.90243 3.33565 3.37791 3.39192 3.93040 4.06089 4.38350 4.51114 5.21624 5.34426 5.46821 5.48181 5.93473 6.23319 6.32924 6.41050 6.81956 7.29601 7.61498 7.69369 7.82055 8.19231 8.98152 9.04203 9.62817 10.10842 11.12652 Molecular weight = 227.07amu Principal moments of inertia in cm(-1) A = 0.032975 B = 0.009338 C = 0.008235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.926921 B = 2997.640538 C = 3399.274328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.573 5.573 3 C -0.263 4.263 4 H 0.077 0.923 5 C 0.008 3.992 6 N -0.899 5.899 7 Si 0.914 3.086 8 H -0.280 1.280 9 H -0.289 1.289 10 H -0.280 1.280 11 C 0.211 3.789 12 C 0.071 3.929 13 N -0.356 5.356 14 O 0.337 5.663 15 N -0.317 5.317 16 C -0.048 4.048 17 C 0.580 3.420 18 O -0.475 6.475 19 O -0.502 6.502 20 H 0.023 0.977 21 H 0.051 0.949 22 H 0.016 0.984 23 H 0.257 0.743 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.142 -10.082 1.031 10.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.293 5.293 3 C -0.393 4.393 4 H 0.094 0.906 5 C -0.192 4.192 6 N -0.542 5.542 7 Si 0.743 3.257 8 H -0.206 1.206 9 H -0.215 1.215 10 H -0.206 1.206 11 C 0.081 3.919 12 C -0.099 4.099 13 N -0.087 5.087 14 O 0.111 5.889 15 N -0.036 5.036 16 C -0.210 4.210 17 C 0.420 3.580 18 O -0.359 6.359 19 O -0.314 6.314 20 H 0.042 0.958 21 H 0.069 0.931 22 H 0.034 0.966 23 H 0.067 0.933 24 H 0.095 0.905 25 H 0.101 0.899 26 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 0.907 -9.637 1.768 9.839 hybrid contribution -0.915 0.735 -0.428 1.249 sum -0.007 -8.901 1.340 9.002 Atomic orbital electron populations 1.20936 0.81122 0.96901 0.99360 1.44403 1.02646 0.99944 1.82276 1.19342 0.98668 0.84600 1.36710 0.90554 1.25182 0.97453 0.99170 0.97442 1.70095 1.17365 1.27832 1.38930 0.86193 0.78666 0.82745 0.78146 1.20602 1.21461 1.20559 1.19895 0.98238 0.89807 0.83979 1.28617 0.86320 0.91018 1.03940 1.75116 1.23224 1.16995 0.93369 1.85020 1.30423 1.44303 1.29150 1.75320 0.96620 1.10115 1.21586 1.24601 0.98355 1.06151 0.91867 1.18660 0.82051 0.75592 0.81706 1.90946 1.64269 1.57466 1.23243 1.84573 1.39469 1.62194 1.45170 0.95818 0.93052 0.96577 0.93274 0.90454 0.89930 0.72220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.99 8.85 59.85 0.53 4.52 15 2 N -0.57 -14.27 2.91 -182.50 -0.53 -14.80 15 3 C -0.26 -7.11 9.68 -15.06 -0.15 -7.25 15 4 H 0.08 2.00 7.84 -52.49 -0.41 1.59 15 5 C 0.01 0.21 5.13 -17.43 -0.09 0.12 15 6 N -0.90 -25.94 10.58 55.49 0.59 -25.35 15 7 Si 0.91 21.58 29.57 -169.99 -5.03 16.55 15 8 H -0.28 -6.47 7.11 56.52 0.40 -6.06 15 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 11 C 0.21 4.35 6.04 -5.19 -0.03 4.32 15 12 C 0.07 1.45 7.37 -79.32 -0.58 0.86 15 13 N -0.36 -7.27 12.22 33.77 0.41 -6.85 15 14 O 0.34 6.30 11.65 27.27 0.32 6.62 15 15 N -0.32 -5.89 12.29 33.49 0.41 -5.48 15 16 C -0.05 -0.90 7.64 -80.09 -0.61 -1.52 15 17 C 0.58 9.72 8.36 34.81 0.29 10.01 15 18 O -0.48 -8.59 15.68 -19.20 -0.30 -8.89 15 19 O -0.50 -6.46 13.44 -40.38 -0.54 -7.00 15 20 H 0.02 0.64 7.44 -51.93 -0.39 0.25 15 21 H 0.05 1.35 7.16 -51.93 -0.37 0.98 15 22 H 0.02 0.35 6.93 -51.93 -0.36 -0.01 15 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 24 H 0.08 1.49 8.03 -51.93 -0.42 1.07 15 25 H 0.08 1.55 7.03 -51.93 -0.37 1.18 15 26 H 0.42 2.92 9.11 45.56 0.42 3.34 15 LS Contribution 244.59 15.07 3.69 3.69 Total: -1.00 -31.25 244.59 -2.66 -33.91 By element: Atomic # 1 Polarization: -2.42 SS G_CDS: -1.03 Total: -3.45 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: -0.64 Total: 11.05 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.88 Total: -52.48 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.53 Total: -9.27 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.25 -2.66 -33.91 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259721404.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.627 kcal (2) G-P(sol) polarization free energy of solvation -31.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds