Wall clock time and date at job start Mon Mar 30 2020 03:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36938 * 120.00018 * 2 1 4 4 H 1.07997 * 119.99610 * 202.16364 * 3 2 1 5 5 C 1.38804 * 120.00107 * 22.16129 * 3 2 1 6 6 N 1.31623 * 119.99950 * 11.35131 * 5 3 2 7 7 Si 1.86801 * 119.99931 * 191.35271 * 5 3 2 8 8 H 1.48499 * 109.47250 * 60.00235 * 7 5 3 9 9 H 1.48500 * 109.47198 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47331 * 299.99843 * 7 5 3 11 11 C 1.46503 * 119.99821 * 179.97438 * 2 1 3 12 12 C 1.50699 * 109.47358 * 270.00501 * 11 2 1 13 13 N 1.30647 * 128.64246 * 270.02778 * 12 11 2 14 14 O 1.20833 * 109.62726 * 179.97438 * 13 12 11 15 15 N 1.20903 * 115.91618 * 359.69082 * 14 13 12 16 16 C 1.31635 * 109.17119 * 0.50103 * 15 14 13 17 17 C 1.48179 * 128.71261 * 179.82392 * 16 15 14 18 18 O 1.21418 * 119.99846 * 179.67498 * 17 16 15 19 19 O 1.34657 * 120.00165 * 359.39443 * 17 16 15 20 20 H 1.08998 * 109.47141 * 273.97692 * 1 2 3 21 21 H 1.09001 * 109.46482 * 33.98123 * 1 2 3 22 22 H 1.09003 * 109.46948 * 153.97535 * 1 2 3 23 23 H 0.97007 * 119.99361 * 179.97438 * 6 5 3 24 24 H 1.08995 * 109.46783 * 150.00441 * 11 2 1 25 25 H 1.08998 * 109.47016 * 30.00465 * 11 2 1 26 26 H 0.96703 * 116.99786 * 180.27550 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1699 1.2204 -0.3529 5 6 1.5327 2.3436 0.4534 6 7 0.3812 2.2708 1.0870 7 14 2.3363 4.0050 0.1645 8 1 2.4950 4.2310 -1.2946 9 1 1.4831 5.0747 0.7416 10 1 3.6698 4.0301 0.8172 11 6 2.1975 -1.2688 0.0006 12 6 2.4486 -1.7033 1.4215 13 7 3.4680 -1.4279 2.1908 14 8 3.3172 -1.9539 3.2682 15 7 2.2993 -2.5913 3.4072 16 6 1.6042 -2.5448 2.2903 17 6 0.2982 -3.1745 1.9847 18 8 -0.2084 -3.0219 0.8918 19 8 -0.3242 -3.9206 2.9170 20 1 -0.3633 0.0713 1.0252 21 1 -0.3632 0.8522 -0.5744 22 1 -0.3633 -0.9235 -0.4509 23 1 -0.0498 3.0799 1.4042 24 1 3.1499 -1.1386 -0.5132 25 1 1.6085 -2.0286 -0.5130 26 1 -1.1721 -4.3144 2.6699 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259721404.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:36 Heat of formation + Delta-G solvation = 31.155322 kcal Electronic energy + Delta-G solvation = -15909.803221 eV Core-core repulsion = 12994.378478 eV Total energy + Delta-G solvation = -2915.424743 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.074 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.89997 -41.24609 -38.03179 -37.23830 -35.73894 -35.57906 -33.22108 -29.25945 -27.95852 -27.47751 -24.55943 -23.24094 -22.38973 -20.09516 -19.46727 -19.12708 -18.76624 -17.97882 -16.92309 -16.76328 -15.70459 -15.54081 -15.40443 -14.67234 -14.19624 -13.76166 -13.08491 -12.95919 -12.86682 -12.82455 -12.64084 -12.38402 -12.26729 -12.19828 -12.03124 -11.91578 -11.46283 -10.73343 -9.05035 -7.93714 -5.44392 -0.50003 0.35459 1.27795 1.46576 1.48443 1.52950 1.55464 2.41625 2.46250 2.49434 3.04860 3.26292 3.63514 3.70812 4.15179 4.31911 4.66900 4.75705 4.88412 5.23176 5.33427 5.56586 5.64293 6.19657 6.73639 7.02022 7.43116 7.68189 8.12129 9.08961 Molecular weight = 227.07amu Principal moments of inertia in cm(-1) A = 0.032975 B = 0.009338 C = 0.008235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.926921 B = 2997.640538 C = 3399.274328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.592 5.592 3 C -0.271 4.271 4 H 0.081 0.919 5 C -0.047 4.047 6 N -0.935 5.935 7 Si 0.974 3.026 8 H -0.271 1.271 9 H -0.295 1.295 10 H -0.277 1.277 11 C 0.213 3.787 12 C 0.057 3.943 13 N -0.363 5.363 14 O 0.346 5.654 15 N -0.313 5.313 16 C -0.047 4.047 17 C 0.587 3.413 18 O -0.491 6.491 19 O -0.490 6.490 20 H -0.007 1.007 21 H 0.026 0.974 22 H 0.039 0.961 23 H 0.251 0.749 24 H 0.091 0.909 25 H 0.103 0.897 26 H 0.446 0.554 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.551 -11.117 1.046 11.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.313 5.313 3 C -0.401 4.401 4 H 0.098 0.902 5 C -0.243 4.243 6 N -0.580 5.580 7 Si 0.802 3.198 8 H -0.196 1.196 9 H -0.221 1.221 10 H -0.202 1.202 11 C 0.084 3.916 12 C -0.112 4.112 13 N -0.091 5.091 14 O 0.119 5.881 15 N -0.032 5.032 16 C -0.210 4.210 17 C 0.427 3.573 18 O -0.376 6.376 19 O -0.305 6.305 20 H 0.012 0.988 21 H 0.044 0.956 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.109 0.891 25 H 0.121 0.879 26 H 0.310 0.690 Dipole moment (debyes) X Y Z Total from point charges 1.333 -10.713 1.776 10.941 hybrid contribution -1.007 0.822 -0.369 1.351 sum 0.326 -9.891 1.407 9.996 Atomic orbital electron populations 1.20583 0.81564 0.96801 0.97159 1.44404 1.02630 1.00865 1.83409 1.19624 0.98693 0.85757 1.36049 0.90173 1.25914 0.98153 1.02339 0.97872 1.70257 1.18919 1.27974 1.40845 0.85237 0.77543 0.78772 0.78278 1.19641 1.22086 1.20229 1.19934 0.98814 0.88645 0.84175 1.28442 0.87015 0.92063 1.03650 1.75077 1.23715 1.16499 0.93813 1.85020 1.30560 1.44136 1.28413 1.75325 0.96500 1.10018 1.21336 1.24931 0.99157 1.05587 0.91298 1.18376 0.81442 0.75666 0.81843 1.90941 1.64455 1.58180 1.24026 1.84514 1.41014 1.61168 1.43760 0.98848 0.95565 0.94262 0.94017 0.89124 0.87908 0.68998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.10 8.85 127.77 1.13 10.23 15 2 N -0.59 -29.13 2.91 -731.31 -2.13 -31.26 15 3 C -0.27 -14.54 9.68 84.03 0.81 -13.73 15 4 H 0.08 4.13 7.84 -2.91 -0.02 4.10 15 5 C -0.05 -2.59 5.13 84.86 0.44 -2.15 15 6 N -0.93 -54.88 10.58 21.65 0.23 -54.65 15 7 Si 0.97 44.53 29.57 68.60 2.03 46.56 15 8 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 9 H -0.29 -13.60 7.11 99.48 0.71 -12.89 15 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 15 11 C 0.21 8.44 6.04 85.63 0.52 8.96 15 12 C 0.06 2.26 7.37 45.18 0.33 2.59 15 13 N -0.36 -14.28 12.22 -51.76 -0.63 -14.91 15 14 O 0.35 12.39 11.65 140.86 1.64 14.04 15 15 N -0.31 -10.99 12.29 -52.03 -0.64 -11.63 15 16 C -0.05 -1.69 7.64 44.26 0.34 -1.36 15 17 C 0.59 18.26 8.36 70.46 0.59 18.85 15 18 O -0.49 -16.63 15.68 20.10 0.32 -16.31 15 19 O -0.49 -11.04 13.44 -55.66 -0.75 -11.79 15 20 H -0.01 -0.38 7.44 -2.39 -0.02 -0.40 15 21 H 0.03 1.39 7.16 -2.39 -0.02 1.37 15 22 H 0.04 1.71 6.93 -2.39 -0.02 1.70 15 23 H 0.25 14.36 8.31 -92.70 -0.77 13.59 15 24 H 0.09 3.32 8.03 -2.39 -0.02 3.30 15 25 H 0.10 3.62 7.03 -2.39 -0.02 3.61 15 26 H 0.45 4.62 9.11 -74.06 -0.67 3.95 15 Total: -1.00 -65.82 244.59 4.79 -61.03 By element: Atomic # 1 Polarization: -5.03 SS G_CDS: 0.57 Total: -4.46 kcal Atomic # 6 Polarization: 19.24 SS G_CDS: 4.16 Total: 23.40 kcal Atomic # 7 Polarization: -109.29 SS G_CDS: -3.17 Total: -112.46 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: 1.21 Total: -14.07 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -65.82 4.79 -61.03 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259721404.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.189 kcal (2) G-P(sol) polarization free energy of solvation -65.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds