Wall clock time and date at job start Mon Mar 30 2020 03:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.45198 * 109.47107 * 2 1 4 4 C 1.34862 * 117.00029 * 180.02562 * 3 2 1 5 5 O 1.21582 * 120.00040 * 359.97438 * 4 3 2 6 6 C 1.46774 * 120.00024 * 180.02562 * 4 3 2 7 7 C 1.41361 * 128.67686 * 180.02562 * 6 4 3 8 8 C 1.40309 * 126.77443 * 0.02562 * 7 6 4 9 9 H 1.08005 * 119.99821 * 359.94815 * 8 7 6 10 10 C 1.40667 * 119.99891 * 179.97438 * 8 7 6 11 11 N 1.30395 * 120.00117 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99893 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47267 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47378 * 119.99619 * 12 10 8 15 15 H 1.48504 * 109.46922 * 239.99997 * 12 10 8 16 16 O 1.34309 * 106.45286 * 179.97438 * 7 6 4 17 17 N 1.20576 * 113.64913 * 359.97438 * 16 7 6 18 18 H 0.97002 * 123.88451 * 180.02562 * 17 16 7 19 19 C 1.34864 * 112.23935 * 0.02562 * 17 16 7 20 20 O 1.21894 * 127.49333 * 179.74210 * 19 17 16 21 21 H 1.08998 * 109.46870 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46923 * 300.00081 * 1 2 3 23 23 H 1.09005 * 109.46896 * 60.00182 * 1 2 3 24 24 H 1.08998 * 109.46923 * 239.99919 * 2 1 3 25 25 H 1.08996 * 109.47043 * 120.00095 * 2 1 3 26 26 H 0.97005 * 119.99759 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3511 1.5457 -0.0005 5 8 4.0917 0.5815 -0.0005 6 6 3.9121 2.9020 0.0000 7 6 5.2695 3.2965 -0.0009 8 6 6.3898 2.4517 -0.0031 9 1 6.2577 1.3797 -0.0034 10 6 7.6848 3.0009 -0.0043 11 7 7.8442 4.2951 -0.0039 12 14 9.1763 1.8762 -0.0079 13 1 8.7286 0.4603 -0.0083 14 1 9.9912 2.1385 -1.2212 15 1 9.9947 2.1356 1.2038 16 8 5.2753 4.6396 -0.0005 17 7 4.1729 5.1280 0.0000 18 1 4.0046 6.0833 0.0001 19 6 3.2005 4.1934 0.0006 20 8 1.9955 4.3766 0.0056 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 8.7372 4.6738 -0.0044 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259796202.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:57 Heat of formation + Delta-G solvation = -89.775713 kcal Electronic energy + Delta-G solvation = -15650.959759 eV Core-core repulsion = 12697.998301 eV Total energy + Delta-G solvation = -2952.961457 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.067 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.96322 -38.80665 -36.56128 -35.33320 -34.57372 -31.48800 -31.00684 -30.12937 -26.98773 -24.01983 -22.05898 -21.08604 -20.05151 -17.87567 -17.57591 -16.28174 -16.26602 -15.66030 -15.41938 -15.07662 -14.19399 -13.17726 -13.16159 -13.07615 -12.46639 -12.32932 -12.13001 -11.73231 -11.71417 -11.40296 -11.22140 -10.89075 -10.63703 -10.11044 -9.61669 -9.23154 -8.67594 -8.60463 -7.55265 -7.25907 -5.48533 2.37256 2.78046 2.89045 2.99555 3.49377 3.55626 3.65214 3.84929 4.27929 4.85815 5.11244 5.43713 5.53142 5.76073 5.93468 6.24233 6.36244 6.38024 6.42336 6.62855 6.87015 7.45019 7.63946 7.76546 7.88098 8.05680 9.16968 9.28725 9.38303 9.72876 Molecular weight = 227.07amu Principal moments of inertia in cm(-1) A = 0.029509 B = 0.009414 C = 0.007175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.632932 B = 2973.544662 C = 3901.730600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.064 3.936 3 O -0.354 6.354 4 C 0.562 3.438 5 O -0.560 6.560 6 C -0.516 4.516 7 C 0.279 3.721 8 C -0.361 4.361 9 H 0.142 0.858 10 C 0.059 3.941 11 N -0.733 5.733 12 Si 0.939 3.061 13 H -0.246 1.246 14 H -0.264 1.264 15 H -0.264 1.264 16 O -0.014 6.014 17 N -0.587 5.587 18 H 0.438 0.562 19 C 0.518 3.482 20 O -0.564 6.564 21 H 0.069 0.931 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.645 -2.196 -0.016 2.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.011 4.011 3 O -0.272 6.272 4 C 0.416 3.584 5 O -0.457 6.457 6 C -0.525 4.525 7 C 0.224 3.776 8 C -0.388 4.388 9 H 0.160 0.840 10 C -0.169 4.169 11 N -0.356 5.356 12 Si 0.760 3.240 13 H -0.169 1.169 14 H -0.188 1.188 15 H -0.188 1.188 16 O -0.024 6.024 17 N -0.281 5.281 18 H 0.286 0.714 19 C 0.319 3.681 20 O -0.449 6.449 21 H 0.088 0.912 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.472 -2.051 -0.014 2.104 hybrid contribution 0.587 0.077 -0.003 0.592 sum 1.059 -1.974 -0.017 2.240 Atomic orbital electron populations 1.21747 0.93825 1.01697 1.03278 1.22706 0.94407 0.82526 1.01460 1.86713 1.25353 1.29254 1.85847 1.19115 0.78980 0.87849 0.72416 1.90672 1.60102 1.42171 1.52722 1.19883 0.92539 0.90225 1.49854 1.20017 0.92922 0.78367 0.86309 1.20046 0.86629 0.96071 1.36036 0.84043 1.26686 1.02643 0.96238 0.91370 1.69541 1.27597 1.12753 1.25686 0.85692 0.77870 0.81106 0.79335 1.16917 1.18820 1.18822 1.84076 1.12886 1.21038 1.84394 1.42830 0.98636 1.08515 1.78102 0.71356 1.19179 0.85954 0.85286 0.77689 1.90759 1.12109 1.84843 1.57180 0.91222 0.91833 0.91841 0.92303 0.92302 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 10.29 37.16 0.38 -1.78 15 2 C 0.06 1.19 6.20 37.16 0.23 1.42 15 3 O -0.35 -8.62 10.06 -40.95 -0.41 -9.03 15 4 C 0.56 14.93 7.94 34.18 0.27 15.20 15 5 O -0.56 -15.07 15.07 -19.33 -0.29 -15.37 15 6 C -0.52 -14.00 6.59 -101.51 -0.67 -14.66 15 7 C 0.28 7.24 6.95 -37.62 -0.26 6.98 15 8 C -0.36 -8.84 9.06 -37.89 -0.34 -9.18 15 9 H 0.14 3.53 6.38 -52.48 -0.34 3.19 15 10 C 0.06 1.27 5.51 -17.25 -0.09 1.18 15 11 N -0.73 -16.01 12.06 55.59 0.67 -15.34 15 12 Si 0.94 15.96 29.56 -169.99 -5.03 10.94 15 13 H -0.25 -4.29 7.11 56.52 0.40 -3.89 15 14 H -0.26 -4.33 7.11 56.52 0.40 -3.93 15 15 H -0.26 -4.33 7.11 56.52 0.40 -3.93 15 16 O -0.01 -0.34 9.44 16.55 0.16 -0.18 15 17 N -0.59 -13.28 6.68 30.50 0.20 -13.08 15 18 H 0.44 7.98 8.96 -40.82 -0.37 7.61 15 19 C 0.52 13.59 8.70 -12.47 -0.11 13.49 15 20 O -0.56 -15.81 17.93 5.02 0.09 -15.72 15 21 H 0.07 0.78 8.14 -51.93 -0.42 0.36 15 22 H 0.06 0.93 8.14 -51.93 -0.42 0.50 15 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 15 24 H 0.06 1.06 8.14 -51.93 -0.42 0.63 15 25 H 0.06 1.06 8.14 -51.93 -0.42 0.63 15 26 H 0.30 5.67 8.29 -40.82 -0.34 5.33 15 LS Contribution 247.70 15.07 3.73 3.73 Total: -1.00 -30.95 247.70 -3.42 -34.37 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -1.95 Total: 7.03 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: -0.59 Total: 12.64 kcal Atomic # 7 Polarization: -29.29 SS G_CDS: 0.87 Total: -28.41 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -0.46 Total: -40.29 kcal Atomic # 14 Polarization: 15.96 SS G_CDS: -5.03 Total: 10.94 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.95 -3.42 -34.37 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259796202.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.408 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds