Wall clock time and date at job start Mon Mar 30 2020 03:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.45198 * 109.47107 * 2 1 4 4 C 1.34862 * 117.00029 * 180.02562 * 3 2 1 5 5 O 1.21582 * 120.00040 * 359.97438 * 4 3 2 6 6 C 1.46774 * 120.00024 * 180.02562 * 4 3 2 7 7 C 1.41361 * 128.67686 * 180.02562 * 6 4 3 8 8 C 1.40309 * 126.77443 * 0.02562 * 7 6 4 9 9 H 1.08005 * 119.99821 * 359.94815 * 8 7 6 10 10 C 1.40667 * 119.99891 * 179.97438 * 8 7 6 11 11 N 1.30395 * 120.00117 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99893 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47267 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47378 * 119.99619 * 12 10 8 15 15 H 1.48504 * 109.46922 * 239.99997 * 12 10 8 16 16 O 1.34309 * 106.45286 * 179.97438 * 7 6 4 17 17 N 1.20576 * 113.64913 * 359.97438 * 16 7 6 18 18 H 0.97002 * 123.88451 * 180.02562 * 17 16 7 19 19 C 1.34864 * 112.23935 * 0.02562 * 17 16 7 20 20 O 1.21894 * 127.49333 * 179.74210 * 19 17 16 21 21 H 1.08998 * 109.46870 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46923 * 300.00081 * 1 2 3 23 23 H 1.09005 * 109.46896 * 60.00182 * 1 2 3 24 24 H 1.08998 * 109.46923 * 239.99919 * 2 1 3 25 25 H 1.08996 * 109.47043 * 120.00095 * 2 1 3 26 26 H 0.97005 * 119.99759 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3511 1.5457 -0.0005 5 8 4.0917 0.5815 -0.0005 6 6 3.9121 2.9020 0.0000 7 6 5.2695 3.2965 -0.0009 8 6 6.3898 2.4517 -0.0031 9 1 6.2577 1.3797 -0.0034 10 6 7.6848 3.0009 -0.0043 11 7 7.8442 4.2951 -0.0039 12 14 9.1763 1.8762 -0.0079 13 1 8.7286 0.4603 -0.0083 14 1 9.9912 2.1385 -1.2212 15 1 9.9947 2.1356 1.2038 16 8 5.2753 4.6396 -0.0005 17 7 4.1729 5.1280 0.0000 18 1 4.0046 6.0833 0.0001 19 6 3.2005 4.1934 0.0006 20 8 1.9955 4.3766 0.0056 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 8.7372 4.6738 -0.0044 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259796202.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:57 Heat of formation + Delta-G solvation = -111.376466 kcal Electronic energy + Delta-G solvation = -15651.896438 eV Core-core repulsion = 12697.998301 eV Total energy + Delta-G solvation = -2953.898136 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.067 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.87144 -40.71279 -38.62563 -37.20516 -36.37607 -33.35522 -32.52380 -32.02193 -28.86110 -25.84353 -23.61486 -22.94612 -21.94457 -19.80647 -19.45432 -18.20940 -18.18386 -17.35891 -17.12850 -16.91575 -16.01172 -15.02116 -14.81514 -14.77372 -14.37820 -14.04055 -13.61816 -13.38596 -13.29271 -13.18566 -12.74403 -12.37526 -12.00770 -11.66146 -11.32413 -11.22347 -10.65061 -10.53966 -9.26774 -9.23539 -7.41307 0.61745 1.37239 1.46624 1.59176 1.62148 1.82906 2.09390 2.14224 2.41754 2.91124 3.18151 4.07377 4.19114 4.39140 4.42813 4.58924 4.65917 4.73351 4.95230 5.08230 5.22359 5.63181 5.75492 5.87514 6.00157 6.19788 7.16762 7.31518 7.72560 7.81471 Molecular weight = 227.07amu Principal moments of inertia in cm(-1) A = 0.029509 B = 0.009414 C = 0.007175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.632932 B = 2973.544662 C = 3901.730600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.051 3.949 3 O -0.371 6.371 4 C 0.554 3.446 5 O -0.576 6.576 6 C -0.553 4.553 7 C 0.250 3.750 8 C -0.363 4.363 9 H 0.133 0.867 10 C 0.026 3.974 11 N -0.745 5.745 12 Si 1.012 2.988 13 H -0.256 1.256 14 H -0.248 1.248 15 H -0.248 1.248 16 O -0.012 6.012 17 N -0.569 5.569 18 H 0.457 0.543 19 C 0.512 3.488 20 O -0.590 6.590 21 H 0.110 0.890 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.319 0.681 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.085 -2.650 -0.020 3.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.022 4.022 3 O -0.289 6.289 4 C 0.409 3.591 5 O -0.475 6.475 6 C -0.562 4.562 7 C 0.195 3.805 8 C -0.389 4.389 9 H 0.150 0.850 10 C -0.202 4.202 11 N -0.367 5.367 12 Si 0.828 3.172 13 H -0.180 1.180 14 H -0.172 1.172 15 H -0.172 1.172 16 O -0.023 6.023 17 N -0.263 5.263 18 H 0.310 0.690 19 C 0.313 3.687 20 O -0.478 6.478 21 H 0.128 0.872 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.897 -2.445 -0.018 3.095 hybrid contribution 0.203 0.231 -0.002 0.307 sum 2.100 -2.214 -0.020 3.051 Atomic orbital electron populations 1.21782 0.90453 1.04292 1.03088 1.23186 0.97055 0.80076 1.01915 1.86684 1.24098 1.32682 1.85455 1.19203 0.79749 0.87718 0.72418 1.90624 1.60601 1.42502 1.53730 1.20304 0.93560 0.91039 1.51292 1.20283 0.93131 0.79003 0.88066 1.20302 0.87914 0.95745 1.34920 0.84967 1.27555 1.04189 0.97800 0.90617 1.69494 1.29804 1.13991 1.23387 0.84670 0.73950 0.78093 0.80452 1.17978 1.17150 1.17155 1.84052 1.13063 1.20535 1.84650 1.42658 0.97620 1.09019 1.77024 0.69031 1.19177 0.85911 0.85836 0.77817 1.90719 1.13047 1.85371 1.58624 0.87152 0.92013 0.92017 0.91869 0.91871 0.86803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 10.29 71.99 0.74 -3.10 15 2 C 0.05 1.91 6.20 71.99 0.45 2.35 15 3 O -0.37 -18.45 10.06 -57.74 -0.58 -19.03 15 4 C 0.55 30.20 7.94 70.05 0.56 30.75 15 5 O -0.58 -31.69 15.07 19.57 0.29 -31.39 15 6 C -0.55 -30.75 6.59 -17.85 -0.12 -30.87 15 7 C 0.25 13.13 6.95 23.54 0.16 13.30 15 8 C -0.36 -17.76 9.06 23.37 0.21 -17.55 15 9 H 0.13 6.66 6.38 -2.91 -0.02 6.64 15 10 C 0.03 1.06 5.51 85.50 0.47 1.53 15 11 N -0.74 -31.05 12.06 21.95 0.26 -30.78 15 12 Si 1.01 30.58 29.56 68.60 2.03 32.61 15 13 H -0.26 -8.14 7.11 99.48 0.71 -7.43 15 14 H -0.25 -6.89 7.11 99.48 0.71 -6.18 15 15 H -0.25 -6.89 7.11 99.48 0.71 -6.18 15 16 O -0.01 -0.60 9.44 69.49 0.66 0.06 15 17 N -0.57 -25.75 6.68 -175.51 -1.17 -26.92 15 18 H 0.46 16.43 8.96 -92.71 -0.83 15.60 15 19 C 0.51 27.33 8.70 86.66 0.75 28.09 15 20 O -0.59 -33.68 17.93 -4.97 -0.09 -33.77 15 21 H 0.11 2.15 8.14 -2.39 -0.02 2.13 15 22 H 0.06 1.72 8.14 -2.39 -0.02 1.70 15 23 H 0.06 1.72 8.14 -2.38 -0.02 1.70 15 24 H 0.06 2.25 8.14 -2.39 -0.02 2.23 15 25 H 0.06 2.25 8.14 -2.39 -0.02 2.23 15 26 H 0.32 11.17 8.29 -92.70 -0.77 10.40 15 Total: -1.00 -66.90 247.70 5.03 -61.87 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.41 Total: 22.84 kcal Atomic # 6 Polarization: 21.29 SS G_CDS: 3.23 Total: 24.51 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -0.91 Total: -57.71 kcal Atomic # 8 Polarization: -84.41 SS G_CDS: 0.28 Total: -84.13 kcal Atomic # 14 Polarization: 30.58 SS G_CDS: 2.03 Total: 32.61 kcal Total: -66.90 5.03 -61.87 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259796202.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.505 kcal (2) G-P(sol) polarization free energy of solvation -66.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds