Wall clock time and date at job start Mon Mar 30 2020 02:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31250 * 1 3 3 Si 1.86805 * 120.00271 * 2 1 4 4 H 1.48495 * 109.47226 * 240.00085 * 3 2 1 5 5 H 1.48496 * 109.46908 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46885 * 120.00064 * 3 2 1 7 7 C 1.39012 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00138 * 180.02562 * 7 2 1 9 9 N 1.37568 * 119.99827 * 359.97438 * 7 2 1 10 10 N 1.40250 * 126.96953 * 0.02562 * 9 7 2 11 11 N 1.28514 * 107.94474 * 180.17095 * 10 9 7 12 12 C 1.34324 * 110.32470 * 0.06164 * 11 10 9 13 13 C 1.34454 * 108.29971 * 359.68914 * 12 11 10 14 14 C 1.50986 * 127.62347 * 180.55645 * 13 12 11 15 15 S 1.81869 * 108.35346 * 342.51665 * 14 13 12 16 16 O 1.42094 * 109.47101 * 160.15703 * 15 14 13 17 17 C 1.81879 * 101.54910 * 44.49102 * 15 14 13 18 18 C 1.50782 * 123.60711 * 179.38727 * 12 11 10 19 19 H 0.97003 * 119.99615 * 359.97438 * 1 2 3 20 20 H 1.09008 * 109.68471 * 222.80144 * 14 13 12 21 21 H 1.09000 * 109.71790 * 102.25626 * 14 13 12 22 22 H 1.08996 * 109.58386 * 175.54214 * 17 15 14 23 23 H 1.09003 * 109.58137 * 55.13492 * 17 15 14 24 24 H 1.09000 * 109.14421 * 280.84438 * 18 12 11 25 25 H 1.08995 * 109.15013 * 40.00202 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2466 1.6177 0.0000 4 1 3.1003 1.6964 -1.2125 5 1 1.2816 2.7464 0.0006 6 1 3.1003 1.6963 1.2125 7 6 2.0076 -1.2039 -0.0005 8 1 3.0876 -1.2039 -0.0001 9 7 1.3197 -2.3952 -0.0005 10 7 -0.0724 -2.5654 -0.0005 11 7 -0.3171 -3.8270 0.0031 12 6 0.8306 -4.5249 0.0069 13 6 1.8545 -3.6535 -0.0013 14 6 3.3315 -3.9669 -0.0125 15 16 3.5539 -5.6961 0.5051 16 8 4.8277 -6.1584 0.0776 17 6 2.2529 -6.5328 -0.4516 18 6 0.8913 -6.0313 0.0252 19 1 -0.4850 0.8401 0.0004 20 1 3.8523 -3.3061 0.6806 21 1 3.7287 -3.8305 -1.0184 22 1 2.3204 -7.6095 -0.2964 23 1 2.3752 -6.3061 -1.5108 24 1 0.7163 -6.3838 1.0417 25 1 0.1149 -6.4284 -0.6286 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260051038.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:57 Heat of formation + Delta-G solvation = 48.156734 kcal Electronic energy + Delta-G solvation = -13612.903800 eV Core-core repulsion = 11140.969165 eV Total energy + Delta-G solvation = -2471.934635 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.047 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.36041 -35.45231 -34.49199 -33.49067 -32.03432 -29.54152 -26.56732 -25.69197 -22.86555 -21.20217 -19.25125 -17.72500 -16.85424 -15.66203 -15.12399 -14.89795 -14.64712 -14.21274 -13.66809 -13.17071 -13.06222 -12.35792 -12.24020 -11.84377 -11.53880 -11.41892 -11.29599 -11.12308 -10.70355 -9.97930 -9.78477 -9.73272 -9.22028 -8.75557 -7.95719 -7.41874 -6.92016 -4.71120 1.88999 2.71845 2.79081 2.90762 2.95105 3.19008 3.61985 3.91737 4.07421 4.54416 4.70615 5.19027 5.35124 5.58972 5.69461 5.71952 6.04699 6.06176 6.29497 6.37758 6.68618 6.83892 7.01192 7.62396 7.80891 8.39602 8.99280 10.04113 10.08518 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.038934 B = 0.009252 C = 0.007591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.993776 B = 3025.712072 C = 3687.807985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.047 3.953 3 Si 0.942 3.058 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.262 1.262 7 C -0.308 4.308 8 H 0.121 0.879 9 N -0.140 5.140 10 N -0.087 5.087 11 N -0.323 5.323 12 C -0.080 4.080 13 C -0.071 4.071 14 C -0.332 4.332 15 S 1.242 4.758 16 O -0.871 6.871 17 C -0.426 4.426 18 C 0.009 3.991 19 H 0.285 0.715 20 H 0.117 0.883 21 H 0.085 0.915 22 H 0.109 0.891 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.392 -4.871 3.214 7.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.173 4.173 3 Si 0.765 3.235 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.186 1.186 7 C -0.445 4.445 8 H 0.138 0.862 9 N 0.088 4.912 10 N -0.063 5.063 11 N -0.183 5.183 12 C -0.227 4.227 13 C -0.206 4.206 14 C -0.471 4.471 15 S 1.441 4.559 16 O -0.866 6.866 17 C -0.565 4.565 18 C -0.032 4.032 19 H 0.096 0.904 20 H 0.135 0.865 21 H 0.103 0.897 22 H 0.128 0.872 23 H 0.104 0.896 24 H 0.095 0.905 25 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.375 -4.441 3.842 6.773 hybrid contribution 1.679 0.886 -2.406 3.064 sum 5.054 -3.555 1.436 6.344 Atomic orbital electron populations 1.70123 1.06431 1.29433 1.32173 1.25792 0.95827 1.00851 0.94850 0.85755 0.79233 0.78629 0.79925 1.18846 1.19685 1.18628 1.20121 0.92329 0.80515 1.51565 0.86178 1.46664 1.06710 1.03927 1.33915 1.82477 0.88326 1.06839 1.28635 1.74177 1.24893 1.00807 1.18434 1.20497 0.89163 0.95168 1.17897 1.19595 0.92525 0.86468 1.21966 1.25785 0.95881 1.17836 1.07645 1.70551 0.84920 0.85753 1.14726 1.93007 1.34662 1.76049 1.82925 1.27328 1.10188 1.08548 1.10426 1.18988 0.93644 0.89001 1.01534 0.90442 0.86514 0.89654 0.87212 0.89555 0.90453 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.82 11.89 55.50 0.66 -19.16 15 2 C 0.05 1.14 5.50 -17.51 -0.10 1.04 15 3 Si 0.94 17.67 29.55 -169.99 -5.02 12.64 15 4 H -0.26 -4.87 7.11 56.52 0.40 -4.47 15 5 H -0.27 -5.02 7.11 56.52 0.40 -4.62 15 6 H -0.26 -4.73 7.11 56.52 0.40 -4.33 15 7 C -0.31 -7.71 10.05 -14.69 -0.15 -7.86 15 8 H 0.12 2.68 7.42 -52.49 -0.39 2.29 15 9 N -0.14 -3.70 3.78 -7.78 -0.03 -3.73 15 10 N -0.09 -2.47 11.74 60.35 0.71 -1.77 15 11 N -0.32 -8.44 12.33 33.24 0.41 -8.03 15 12 C -0.08 -1.75 6.79 -82.80 -0.56 -2.31 15 13 C -0.07 -1.59 6.72 -81.61 -0.55 -2.14 15 14 C -0.33 -5.97 6.24 36.15 0.23 -5.75 15 15 S 1.24 18.00 13.72 -107.50 -1.47 16.53 15 16 O -0.87 -16.89 18.14 -35.23 -0.64 -17.53 15 17 C -0.43 -6.01 6.46 37.02 0.24 -5.77 15 18 C 0.01 0.14 6.05 -27.98 -0.17 -0.03 15 19 H 0.28 6.76 8.31 -40.82 -0.34 6.42 15 20 H 0.12 1.93 7.96 -51.92 -0.41 1.52 15 21 H 0.08 1.59 8.14 -51.93 -0.42 1.17 15 22 H 0.11 1.24 8.14 -51.93 -0.42 0.82 15 23 H 0.09 1.34 8.14 -51.93 -0.42 0.92 15 24 H 0.08 1.01 8.14 -51.93 -0.42 0.58 15 25 H 0.07 1.16 8.14 -51.93 -0.42 0.74 15 LS Contribution 234.67 15.07 3.54 3.54 Total: -1.00 -34.34 234.67 -4.96 -39.31 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -2.05 Total: 1.02 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -1.06 Total: -22.81 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 1.75 Total: -32.69 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.64 Total: -17.53 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.02 Total: 12.64 kcal Atomic # 16 Polarization: 18.00 SS G_CDS: -1.47 Total: 16.53 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -34.34 -4.96 -39.31 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260051038.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.462 kcal (2) G-P(sol) polarization free energy of solvation -34.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds