Wall clock time and date at job start Mon Mar 30 2020 02:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31250 * 1 3 3 Si 1.86805 * 120.00271 * 2 1 4 4 H 1.48495 * 109.47226 * 240.00085 * 3 2 1 5 5 H 1.48496 * 109.46908 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46885 * 120.00064 * 3 2 1 7 7 C 1.39012 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00138 * 180.02562 * 7 2 1 9 9 N 1.37568 * 119.99827 * 359.97438 * 7 2 1 10 10 N 1.40250 * 126.96953 * 0.02562 * 9 7 2 11 11 N 1.28514 * 107.94474 * 180.17095 * 10 9 7 12 12 C 1.34324 * 110.32470 * 0.06164 * 11 10 9 13 13 C 1.34454 * 108.29971 * 359.68914 * 12 11 10 14 14 C 1.50986 * 127.62347 * 180.55645 * 13 12 11 15 15 S 1.81869 * 108.35346 * 342.51665 * 14 13 12 16 16 O 1.42094 * 109.47101 * 160.15703 * 15 14 13 17 17 C 1.81879 * 101.54910 * 44.49102 * 15 14 13 18 18 C 1.50782 * 123.60711 * 179.38727 * 12 11 10 19 19 H 0.97003 * 119.99615 * 359.97438 * 1 2 3 20 20 H 1.09008 * 109.68471 * 222.80144 * 14 13 12 21 21 H 1.09000 * 109.71790 * 102.25626 * 14 13 12 22 22 H 1.08996 * 109.58386 * 175.54214 * 17 15 14 23 23 H 1.09003 * 109.58137 * 55.13492 * 17 15 14 24 24 H 1.09000 * 109.14421 * 280.84438 * 18 12 11 25 25 H 1.08995 * 109.15013 * 40.00202 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2466 1.6177 0.0000 4 1 3.1003 1.6964 -1.2125 5 1 1.2816 2.7464 0.0006 6 1 3.1003 1.6963 1.2125 7 6 2.0076 -1.2039 -0.0005 8 1 3.0876 -1.2039 -0.0001 9 7 1.3197 -2.3952 -0.0005 10 7 -0.0724 -2.5654 -0.0005 11 7 -0.3171 -3.8270 0.0031 12 6 0.8306 -4.5249 0.0069 13 6 1.8545 -3.6535 -0.0013 14 6 3.3315 -3.9669 -0.0125 15 16 3.5539 -5.6961 0.5051 16 8 4.8277 -6.1584 0.0776 17 6 2.2529 -6.5328 -0.4516 18 6 0.8913 -6.0313 0.0252 19 1 -0.4850 0.8401 0.0004 20 1 3.8523 -3.3061 0.6806 21 1 3.7287 -3.8305 -1.0184 22 1 2.3204 -7.6095 -0.2964 23 1 2.3752 -6.3061 -1.5108 24 1 0.7163 -6.3838 1.0417 25 1 0.1149 -6.4284 -0.6286 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260051038.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:57 Heat of formation + Delta-G solvation = 21.279981 kcal Electronic energy + Delta-G solvation = -13614.069264 eV Core-core repulsion = 11140.969165 eV Total energy + Delta-G solvation = -2473.100099 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.047 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.19186 -36.90081 -36.23536 -35.02266 -33.82162 -31.12193 -28.18975 -27.51953 -24.27750 -23.07348 -20.91678 -19.50450 -18.16612 -17.47343 -16.63238 -16.34027 -16.13850 -15.65432 -15.19626 -14.67633 -14.60337 -13.92199 -13.70128 -13.44956 -13.20279 -13.00585 -12.67853 -12.45962 -12.15787 -11.68398 -11.53712 -11.39987 -10.86031 -10.61270 -9.27714 -9.18225 -8.72265 -6.63763 0.63445 1.05729 1.34857 1.51139 1.54606 1.61231 2.04926 2.12615 2.63962 2.87678 2.93372 3.90314 4.00542 4.07836 4.25823 4.37590 4.54373 4.69315 4.90724 4.99861 5.16443 5.20050 5.36584 5.94104 5.95707 6.57334 7.14144 8.18518 8.28290 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.038934 B = 0.009252 C = 0.007591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.993776 B = 3025.712072 C = 3687.807985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.001 3.999 3 Si 1.022 2.978 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.247 1.247 7 C -0.339 4.339 8 H 0.141 0.859 9 N -0.161 5.161 10 N -0.147 5.147 11 N -0.356 5.356 12 C -0.073 4.073 13 C -0.077 4.077 14 C -0.345 4.345 15 S 1.322 4.678 16 O -0.911 6.911 17 C -0.424 4.424 18 C 0.008 3.992 19 H 0.289 0.711 20 H 0.129 0.871 21 H 0.077 0.923 22 H 0.151 0.849 23 H 0.073 0.927 24 H 0.117 0.883 25 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.042 -5.855 3.724 9.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.214 4.214 3 Si 0.840 3.160 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.170 1.170 7 C -0.475 4.475 8 H 0.158 0.842 9 N 0.066 4.934 10 N -0.122 5.122 11 N -0.215 5.215 12 C -0.221 4.221 13 C -0.211 4.211 14 C -0.482 4.482 15 S 1.520 4.480 16 O -0.906 6.906 17 C -0.563 4.563 18 C -0.032 4.032 19 H 0.099 0.901 20 H 0.147 0.853 21 H 0.095 0.905 22 H 0.169 0.831 23 H 0.092 0.908 24 H 0.135 0.865 25 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.019 -5.432 4.351 8.581 hybrid contribution 1.160 1.026 -2.586 3.014 sum 6.179 -4.406 1.765 7.791 Atomic orbital electron populations 1.70273 1.08589 1.30665 1.33684 1.27020 0.96512 1.04587 0.93288 0.84599 0.77760 0.73114 0.80563 1.18054 1.19422 1.17008 1.20828 0.93497 0.80936 1.52284 0.84175 1.47005 1.06560 1.05508 1.34312 1.82422 0.89998 1.08081 1.31682 1.74141 1.26697 1.00731 1.19910 1.21552 0.87770 0.98015 1.14810 1.20411 0.94829 0.85467 1.20430 1.26077 0.92942 1.21499 1.07688 1.70264 0.82911 0.82253 1.12583 1.92911 1.37787 1.76215 1.83723 1.27333 1.08553 1.10970 1.09442 1.19228 0.94951 0.84752 1.04283 0.90115 0.85299 0.90476 0.83096 0.90771 0.86525 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -43.71 11.89 21.66 0.26 -43.45 15 2 C 0.00 0.07 5.50 84.97 0.47 0.54 15 3 Si 1.02 35.89 29.55 68.60 2.03 37.92 15 4 H -0.26 -8.62 7.11 99.48 0.71 -7.91 15 5 H -0.27 -9.24 7.11 99.48 0.71 -8.53 15 6 H -0.25 -7.98 7.11 99.48 0.71 -7.28 15 7 C -0.34 -17.19 10.05 83.98 0.84 -16.35 15 8 H 0.14 6.21 7.42 -2.91 -0.02 6.19 15 9 N -0.16 -8.66 3.78 -178.51 -0.67 -9.33 15 10 N -0.15 -8.66 11.74 37.02 0.43 -8.23 15 11 N -0.36 -18.95 12.33 -48.75 -0.60 -19.55 15 12 C -0.07 -3.15 6.79 41.34 0.28 -2.87 15 13 C -0.08 -3.43 6.72 41.02 0.28 -3.16 15 14 C -0.34 -11.93 6.24 71.33 0.44 -11.48 15 15 S 1.32 34.23 13.72 -56.49 -0.77 33.46 15 16 O -0.91 -32.63 18.14 -148.98 -2.70 -35.34 15 17 C -0.42 -10.32 6.46 71.89 0.46 -9.86 15 18 C 0.01 0.23 6.05 29.79 0.18 0.41 15 19 H 0.29 14.21 8.31 -92.71 -0.77 13.44 15 20 H 0.13 4.09 7.96 -2.38 -0.02 4.07 15 21 H 0.08 2.80 8.14 -2.39 -0.02 2.78 15 22 H 0.15 2.57 8.14 -2.39 -0.02 2.55 15 23 H 0.07 2.07 8.14 -2.39 -0.02 2.05 15 24 H 0.12 2.51 8.14 -2.39 -0.02 2.49 15 25 H 0.08 2.28 8.14 -2.39 -0.02 2.26 15 Total: -1.00 -77.32 234.67 2.14 -75.18 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 1.21 Total: 12.10 kcal Atomic # 6 Polarization: -45.73 SS G_CDS: 2.96 Total: -42.77 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -0.58 Total: -80.56 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -2.70 Total: -35.34 kcal Atomic # 14 Polarization: 35.89 SS G_CDS: 2.03 Total: 37.92 kcal Atomic # 16 Polarization: 34.23 SS G_CDS: -0.77 Total: 33.46 kcal Total: -77.32 2.14 -75.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260051038.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.462 kcal (2) G-P(sol) polarization free energy of solvation -77.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds