Wall clock time and date at job start Mon Mar 30 2020 03:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 N 1.32109 * 120.00989 * 2 1 4 4 C 1.32146 * 120.01890 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.98612 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46670 * 145.00508 * 5 4 3 7 7 N 1.46893 * 109.46985 * 25.00079 * 5 4 3 8 8 C 1.50706 * 109.46817 * 265.00284 * 5 4 3 9 9 H 1.07999 * 120.00196 * 0.02562 * 8 5 4 10 10 C 1.37879 * 119.99394 * 180.02562 * 8 5 4 11 11 N 1.31514 * 120.00338 * 359.97438 * 10 8 5 12 12 Si 1.86800 * 119.99426 * 180.02562 * 10 8 5 13 13 H 1.48501 * 109.47361 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47264 * 120.00115 * 12 10 8 15 15 H 1.48500 * 109.46969 * 239.99720 * 12 10 8 16 16 C 1.38348 * 120.02946 * 0.26455 * 4 3 2 17 17 N 1.32150 * 120.01875 * 359.47370 * 16 4 3 18 18 C 1.32246 * 119.98011 * 0.52189 * 17 16 4 19 19 Cl 1.73606 * 120.01413 * 179.75621 * 18 17 16 20 20 H 1.08993 * 109.46779 * 89.99286 * 1 2 3 21 21 H 1.08997 * 109.46990 * 209.99610 * 1 2 3 22 22 H 1.08997 * 109.46488 * 329.99310 * 1 2 3 23 23 H 1.00892 * 111.00624 * 300.00223 * 7 5 4 24 24 H 1.00900 * 111.00217 * 63.96084 * 7 5 4 25 25 H 0.96996 * 119.99730 * 180.02562 * 11 10 8 26 26 H 1.07995 * 119.99159 * 179.72060 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1679 1.1440 0.0000 4 6 3.4893 1.1442 -0.0005 5 6 4.2423 2.4496 -0.0011 6 1 5.1533 2.3437 0.5880 7 7 3.3999 3.5010 0.5843 8 6 4.5999 2.8225 -1.4168 9 1 4.3105 2.1789 -2.2343 10 6 5.2966 3.9855 -1.6682 11 7 5.6486 4.7695 -0.6727 12 14 5.7393 4.4481 -3.4231 13 1 5.2318 3.4070 -4.3525 14 1 5.1232 5.7564 -3.7605 15 1 7.2153 4.5484 -3.5512 16 6 4.1819 -0.0535 -0.0066 17 7 3.5223 -1.1986 -0.0014 18 6 2.1998 -1.1995 -0.0008 19 17 1.3325 -2.7033 -0.0003 20 1 -0.3632 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3632 0.8899 0.5139 23 1 2.5485 3.6184 0.0558 24 1 3.1997 3.3060 1.5538 25 1 6.1384 5.5878 -0.8497 26 1 5.2618 -0.0526 -0.0116 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260305400.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:34 Heat of formation + Delta-G solvation = 36.027601 kcal Electronic energy + Delta-G solvation = -13310.298601 eV Core-core repulsion = 10835.794301 eV Total energy + Delta-G solvation = -2474.504301 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.052 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.78264 -36.68914 -35.04224 -34.18411 -32.13942 -30.58401 -28.03209 -26.17631 -24.22123 -22.68589 -20.72580 -17.49687 -16.93408 -16.59846 -15.13410 -15.00476 -14.37165 -13.99588 -13.62069 -12.86147 -12.64105 -12.56450 -12.33532 -11.93149 -11.36749 -11.28523 -11.08526 -10.90139 -10.82502 -10.51627 -10.07368 -9.41546 -8.85710 -8.57730 -8.34803 -7.18956 -6.00632 -4.17493 1.05626 1.43428 1.90788 3.27462 3.36096 3.39421 3.95360 4.34452 4.42125 4.65785 4.67258 5.25431 5.40168 5.51467 5.61419 5.77919 5.80285 6.08640 6.31616 6.71153 7.11448 7.52338 7.76644 7.92448 8.12510 8.54241 8.94874 8.99785 9.51863 11.03551 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.043565 B = 0.007103 C = 0.006853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.565304 B = 3941.012750 C = 4085.100021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.102 3.898 3 N -0.431 5.431 4 C 0.102 3.898 5 C 0.271 3.729 6 H 0.064 0.936 7 N -0.800 5.800 8 C -0.534 4.534 9 H 0.053 0.947 10 C 0.088 3.912 11 N -0.842 5.842 12 Si 0.890 3.110 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.283 1.283 16 C 0.060 3.940 17 N -0.434 5.434 18 C 0.087 3.913 19 Cl -0.039 7.039 20 H 0.083 0.917 21 H 0.078 0.922 22 H 0.082 0.918 23 H 0.330 0.670 24 H 0.298 0.702 25 H 0.258 0.742 26 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.488 -9.210 2.179 12.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.040 4.040 3 N -0.147 5.147 4 C -0.041 4.041 5 C 0.158 3.842 6 H 0.081 0.919 7 N -0.324 5.324 8 C -0.573 4.573 9 H 0.071 0.929 10 C -0.120 4.120 11 N -0.476 5.476 12 Si 0.717 3.283 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.209 1.209 16 C -0.102 4.102 17 N -0.150 5.150 18 C -0.079 4.079 19 Cl -0.011 7.011 20 H 0.101 0.899 21 H 0.097 0.903 22 H 0.101 0.899 23 H 0.143 0.857 24 H 0.108 0.892 25 H 0.068 0.932 26 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -6.872 -8.668 2.094 11.258 hybrid contribution -0.419 -0.790 -0.909 1.275 sum -7.291 -9.458 1.185 12.001 Atomic orbital electron populations 1.20735 0.87795 1.03856 1.03599 1.22020 0.98384 0.87596 0.95974 1.68304 1.09301 1.26450 1.10660 1.24903 0.90187 1.01254 0.87776 1.18370 0.90351 0.78218 0.97229 0.91894 1.59118 1.22303 1.47852 1.03150 1.20674 1.38537 1.08208 0.89925 0.92877 1.24887 0.94675 0.95793 0.96637 1.70096 1.35497 1.11767 1.30206 0.86600 0.78099 0.78525 0.85055 1.19919 1.20857 1.20875 1.23649 1.01983 0.86703 0.97849 1.67640 1.07005 1.31345 1.09012 1.22365 0.91215 0.87717 1.06625 1.98352 1.73508 1.32452 1.96795 0.89891 0.90287 0.89909 0.85706 0.89236 0.93167 0.80601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.28 9.80 36.01 0.35 -0.93 15 2 C 0.10 1.73 6.79 -82.37 -0.56 1.17 15 3 N -0.43 -8.42 9.44 -5.53 -0.05 -8.48 15 4 C 0.10 2.10 5.81 -82.42 -0.48 1.63 15 5 C 0.27 6.34 2.88 -70.02 -0.20 6.14 15 6 H 0.06 1.55 8.12 -51.93 -0.42 1.13 15 7 N -0.80 -18.34 8.32 -6.65 -0.06 -18.39 15 8 C -0.53 -14.00 8.71 -34.44 -0.30 -14.30 15 9 H 0.05 1.43 7.74 -52.49 -0.41 1.02 15 10 C 0.09 2.35 5.39 -17.82 -0.10 2.25 15 11 N -0.84 -23.36 12.77 55.43 0.71 -22.65 15 12 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 15 13 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 16 C 0.06 1.14 10.90 -17.37 -0.19 0.95 15 17 N -0.43 -8.09 10.49 -10.17 -0.11 -8.20 15 18 C 0.09 1.50 7.28 -17.27 -0.13 1.37 15 19 Cl -0.04 -0.54 27.48 -51.86 -1.42 -1.97 15 20 H 0.08 0.96 8.14 -51.93 -0.42 0.53 15 21 H 0.08 0.85 6.91 -51.93 -0.36 0.49 15 22 H 0.08 0.99 8.14 -51.93 -0.42 0.57 15 23 H 0.33 7.57 8.46 -39.30 -0.33 7.24 15 24 H 0.30 6.17 9.06 -39.29 -0.36 5.81 15 25 H 0.26 6.85 8.31 -40.82 -0.34 6.51 15 26 H 0.18 3.00 8.06 -52.49 -0.42 2.58 15 LS Contribution 249.86 15.07 3.77 3.77 Total: -1.00 -28.32 249.86 -6.06 -34.38 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -2.28 Total: 7.60 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -1.60 Total: -1.73 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: 0.49 Total: -57.71 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.42 Total: -1.97 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.32 -6.06 -34.38 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260305400.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.409 kcal (2) G-P(sol) polarization free energy of solvation -28.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds