Wall clock time and date at job start Mon Mar 30 2020 02:45:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31255 * 1
3 3 Si 1.86794 * 119.99953 * 2 1
4 4 H 1.48504 * 109.47111 * 274.97711 * 3 2 1
5 5 H 1.48499 * 109.47638 * 34.97698 * 3 2 1
6 6 H 1.48501 * 109.47138 * 154.97857 * 3 2 1
7 7 C 1.39012 * 119.99806 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99511 * 185.90008 * 7 2 1
9 9 N 1.37570 * 120.00358 * 5.89172 * 7 2 1
10 10 N 1.40175 * 126.84892 * 354.16268 * 9 7 2
11 11 N 1.28579 * 107.95087 * 180.21682 * 10 9 7
12 12 C 1.33912 * 110.06254 * 0.08266 * 11 10 9
13 13 C 1.34435 * 109.01468 * 359.65150 * 12 11 10
14 14 C 1.50414 * 129.00199 * 180.52164 * 13 12 11
15 15 C 1.52830 * 111.03088 * 340.72986 * 14 13 12
16 16 S 1.81875 * 108.82466 * 51.54573 * 15 14 13
17 17 O 1.42099 * 109.46614 * 179.69265 * 16 15 14
18 18 C 1.51351 * 124.22478 * 179.53495 * 12 11 10
19 19 H 0.97001 * 119.99936 * 359.97438 * 1 2 3
20 20 H 1.08994 * 109.17000 * 220.33264 * 14 13 12
21 21 H 1.08999 * 109.16854 * 101.13022 * 14 13 12
22 22 H 1.09000 * 109.60175 * 171.38966 * 15 14 13
23 23 H 1.08999 * 109.59709 * 291.70622 * 15 14 13
24 24 H 1.08997 * 109.67850 * 282.05375 * 18 12 11
25 25 H 1.09002 * 109.67292 * 42.55904 * 18 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3125 0.0000 0.0000
3 14 2.2465 1.6177 0.0000
4 1 2.3888 2.1071 -1.3948
5 1 1.5006 2.6201 0.8026
6 1 3.5927 1.4121 0.5922
7 6 2.0076 -1.2039 0.0005
8 1 3.0833 -1.2063 0.0967
9 7 1.3252 -2.3922 -0.1212
10 7 -0.0658 -2.5648 -0.1397
11 7 -0.3075 -3.8216 -0.2635
12 6 0.8415 -4.5063 -0.3278
13 6 1.8701 -3.6443 -0.2485
14 6 3.3470 -3.9268 -0.2863
15 6 3.6336 -5.3923 0.0386
16 16 2.6021 -6.4428 -1.0293
17 8 2.8632 -7.8100 -0.7432
18 6 0.9292 -6.0110 -0.4649
19 1 -0.4850 0.8401 0.0004
20 1 3.8513 -3.2933 0.4432
21 1 3.7294 -3.6994 -1.2814
22 1 4.6864 -5.6081 -0.1433
23 1 3.3955 -5.5883 1.0841
24 1 0.7382 -6.4793 0.5006
25 1 0.1946 -6.3567 -1.1922
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260678998.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:45:01
Heat of formation + Delta-G solvation = 48.549330 kcal
Electronic energy + Delta-G solvation = -13596.267010 eV
Core-core repulsion = 11124.349398 eV
Total energy + Delta-G solvation = -2471.917611 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 227.047 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-40.38037 -35.42015 -34.32455 -33.86419 -31.67564 -29.84757 -26.63613 -25.20118
-23.28498 -21.24117 -19.13381 -17.70303 -16.86546 -15.70196 -15.19802 -14.80914
-14.55773 -14.29095 -13.65115 -13.26347 -12.99677 -12.42508 -12.16779 -11.85795
-11.53164 -11.40493 -11.31178 -11.16627 -10.66673 -10.03740 -9.82797 -9.72602
-9.19082 -8.74098 -7.93009 -7.42661 -6.92777 -4.71765 1.91244 2.71350
2.83005 2.89912 2.96635 3.17586 3.59701 3.93532 4.08603 4.44712
4.69201 5.22048 5.30486 5.59352 5.75142 5.78533 6.02017 6.06377
6.24366 6.31143 6.70351 6.78512 7.00575 7.58526 7.80106 8.39574
8.99157 10.03620 10.08270
Molecular weight = 227.05amu
Principal moments of inertia in cm(-1)
A = 0.052576 B = 0.008248 C = 0.007250
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 532.437480 B = 3394.039822 C = 3861.168140
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.755 5.755
2 C 0.047 3.953
3 Si 0.943 3.057
4 H -0.266 1.266
5 H -0.273 1.273
6 H -0.260 1.260
7 C -0.309 4.309
8 H 0.124 0.876
9 N -0.143 5.143
10 N -0.088 5.088
11 N -0.322 5.322
12 C -0.051 4.051
13 C -0.098 4.098
14 C 0.000 4.000
15 C -0.423 4.423
16 S 1.234 4.766
17 O -0.873 6.873
18 C -0.322 4.322
19 H 0.284 0.716
20 H 0.074 0.926
21 H 0.081 0.919
22 H 0.111 0.889
23 H 0.086 0.914
24 H 0.082 0.918
25 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.816 -1.590 -3.436 8.685
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.381 5.381
2 C -0.174 4.174
3 Si 0.765 3.235
4 H -0.191 1.191
5 H -0.198 1.198
6 H -0.184 1.184
7 C -0.446 4.446
8 H 0.141 0.859
9 N 0.086 4.914
10 N -0.064 5.064
11 N -0.182 5.182
12 C -0.199 4.199
13 C -0.233 4.233
14 C -0.040 4.040
15 C -0.561 4.561
16 S 1.434 4.566
17 O -0.868 6.868
18 C -0.462 4.462
19 H 0.095 0.905
20 H 0.092 0.908
21 H 0.099 0.901
22 H 0.129 0.871
23 H 0.105 0.895
24 H 0.101 0.899
25 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges 6.382 -1.464 -4.065 7.707
hybrid contribution 0.932 0.042 2.358 2.536
sum 7.315 -1.422 -1.706 7.644
Atomic orbital electron populations
1.70146 1.06522 1.29325 1.32111 1.25809 0.95789 1.00914 0.94841
0.85669 0.79505 0.79008 0.79289 1.19115 1.19796 1.18381 1.20201
0.92886 0.80589 1.50905 0.85867 1.46755 1.06603 1.04350 1.33731
1.82473 0.88692 1.06816 1.28393 1.74127 1.24837 1.01019 1.18179
1.19434 0.89618 0.92714 1.18134 1.20611 0.95042 0.86504 1.21097
1.19078 0.89923 0.92506 1.02515 1.27296 1.10551 1.06610 1.11682
1.70487 0.87207 0.86398 1.12540 1.93009 1.81464 1.28564 1.83741
1.25678 1.16704 0.96151 1.07638 0.90518 0.90788 0.90101 0.87110
0.89533 0.89932 0.86480
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.76 -19.54 11.91 55.50 0.66 -18.88 15
2 C 0.05 1.10 5.50 -17.51 -0.10 1.01 15
3 Si 0.94 17.06 29.55 -169.99 -5.02 12.04 15
4 H -0.27 -4.74 7.11 56.52 0.40 -4.34 15
5 H -0.27 -4.95 7.11 56.52 0.40 -4.55 15
6 H -0.26 -4.46 7.11 56.52 0.40 -4.06 15
7 C -0.31 -7.42 9.99 -14.69 -0.15 -7.57 15
8 H 0.12 2.57 7.22 -52.49 -0.38 2.20 15
9 N -0.14 -3.67 3.79 -7.86 -0.03 -3.70 15
10 N -0.09 -2.50 11.74 60.35 0.71 -1.79 15
11 N -0.32 -8.59 12.33 33.31 0.41 -8.18 15
12 C -0.05 -1.15 6.86 -82.71 -0.57 -1.71 15
13 C -0.10 -2.15 6.67 -81.70 -0.55 -2.69 15
14 C 0.00 0.00 5.49 -28.11 -0.15 -0.15 15
15 C -0.42 -5.99 6.48 37.07 0.24 -5.75 15
16 S 1.23 17.90 13.70 -107.50 -1.47 16.42 15
17 O -0.87 -16.92 18.14 -35.23 -0.64 -17.56 15
18 C -0.32 -5.76 6.84 36.33 0.25 -5.51 15
19 H 0.28 6.64 8.31 -40.82 -0.34 6.30 15
20 H 0.07 1.17 7.66 -51.93 -0.40 0.78 15
21 H 0.08 1.07 8.14 -51.93 -0.42 0.65 15
22 H 0.11 1.26 8.14 -51.93 -0.42 0.84 15
23 H 0.09 1.34 8.14 -51.93 -0.42 0.92 15
24 H 0.08 1.52 8.14 -51.93 -0.42 1.10 15
25 H 0.12 1.92 8.14 -51.93 -0.42 1.49 15
LS Contribution 234.20 15.07 3.53 3.53
Total: -1.00 -34.29 234.20 -4.90 -39.19
By element:
Atomic # 1 Polarization: 3.34 SS G_CDS: -2.02 Total: 1.32 kcal
Atomic # 6 Polarization: -21.36 SS G_CDS: -1.02 Total: -22.38 kcal
Atomic # 7 Polarization: -34.31 SS G_CDS: 1.75 Total: -32.56 kcal
Atomic # 8 Polarization: -16.92 SS G_CDS: -0.64 Total: -17.56 kcal
Atomic # 14 Polarization: 17.06 SS G_CDS: -5.02 Total: 12.04 kcal
Atomic # 16 Polarization: 17.90 SS G_CDS: -1.47 Total: 16.42 kcal
Total LS contribution 3.53 Total: 3.53 kcal
Total: -34.29 -4.90 -39.19 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260678998.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 87.743 kcal
(2) G-P(sol) polarization free energy of solvation -34.292 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.451 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.902 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.194 kcal
(6) G-S(sol) free energy of system = (1) + (5) 48.549 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds