Wall clock time and date at job start Mon Mar 30 2020 02:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31255 * 1 3 3 Si 1.86794 * 119.99953 * 2 1 4 4 H 1.48504 * 109.47111 * 274.97711 * 3 2 1 5 5 H 1.48499 * 109.47638 * 34.97698 * 3 2 1 6 6 H 1.48501 * 109.47138 * 154.97857 * 3 2 1 7 7 C 1.39012 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99511 * 185.90008 * 7 2 1 9 9 N 1.37570 * 120.00358 * 5.89172 * 7 2 1 10 10 N 1.40175 * 126.84892 * 354.16268 * 9 7 2 11 11 N 1.28579 * 107.95087 * 180.21682 * 10 9 7 12 12 C 1.33912 * 110.06254 * 0.08266 * 11 10 9 13 13 C 1.34435 * 109.01468 * 359.65150 * 12 11 10 14 14 C 1.50414 * 129.00199 * 180.52164 * 13 12 11 15 15 C 1.52830 * 111.03088 * 340.72986 * 14 13 12 16 16 S 1.81875 * 108.82466 * 51.54573 * 15 14 13 17 17 O 1.42099 * 109.46614 * 179.69265 * 16 15 14 18 18 C 1.51351 * 124.22478 * 179.53495 * 12 11 10 19 19 H 0.97001 * 119.99936 * 359.97438 * 1 2 3 20 20 H 1.08994 * 109.17000 * 220.33264 * 14 13 12 21 21 H 1.08999 * 109.16854 * 101.13022 * 14 13 12 22 22 H 1.09000 * 109.60175 * 171.38966 * 15 14 13 23 23 H 1.08999 * 109.59709 * 291.70622 * 15 14 13 24 24 H 1.08997 * 109.67850 * 282.05375 * 18 12 11 25 25 H 1.09002 * 109.67292 * 42.55904 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2465 1.6177 0.0000 4 1 2.3888 2.1071 -1.3948 5 1 1.5006 2.6201 0.8026 6 1 3.5927 1.4121 0.5922 7 6 2.0076 -1.2039 0.0005 8 1 3.0833 -1.2063 0.0967 9 7 1.3252 -2.3922 -0.1212 10 7 -0.0658 -2.5648 -0.1397 11 7 -0.3075 -3.8216 -0.2635 12 6 0.8415 -4.5063 -0.3278 13 6 1.8701 -3.6443 -0.2485 14 6 3.3470 -3.9268 -0.2863 15 6 3.6336 -5.3923 0.0386 16 16 2.6021 -6.4428 -1.0293 17 8 2.8632 -7.8100 -0.7432 18 6 0.9292 -6.0110 -0.4649 19 1 -0.4850 0.8401 0.0004 20 1 3.8513 -3.2933 0.4432 21 1 3.7294 -3.6994 -1.2814 22 1 4.6864 -5.6081 -0.1433 23 1 3.3955 -5.5883 1.0841 24 1 0.7382 -6.4793 0.5006 25 1 0.1946 -6.3567 -1.1922 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260678998.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:01 Heat of formation + Delta-G solvation = 48.549330 kcal Electronic energy + Delta-G solvation = -13596.267010 eV Core-core repulsion = 11124.349398 eV Total energy + Delta-G solvation = -2471.917611 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.047 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.38037 -35.42015 -34.32455 -33.86419 -31.67564 -29.84757 -26.63613 -25.20118 -23.28498 -21.24117 -19.13381 -17.70303 -16.86546 -15.70196 -15.19802 -14.80914 -14.55773 -14.29095 -13.65115 -13.26347 -12.99677 -12.42508 -12.16779 -11.85795 -11.53164 -11.40493 -11.31178 -11.16627 -10.66673 -10.03740 -9.82797 -9.72602 -9.19082 -8.74098 -7.93009 -7.42661 -6.92777 -4.71765 1.91244 2.71350 2.83005 2.89912 2.96635 3.17586 3.59701 3.93532 4.08603 4.44712 4.69201 5.22048 5.30486 5.59352 5.75142 5.78533 6.02017 6.06377 6.24366 6.31143 6.70351 6.78512 7.00575 7.58526 7.80106 8.39574 8.99157 10.03620 10.08270 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.052576 B = 0.008248 C = 0.007250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.437480 B = 3394.039822 C = 3861.168140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.047 3.953 3 Si 0.943 3.057 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.309 4.309 8 H 0.124 0.876 9 N -0.143 5.143 10 N -0.088 5.088 11 N -0.322 5.322 12 C -0.051 4.051 13 C -0.098 4.098 14 C 0.000 4.000 15 C -0.423 4.423 16 S 1.234 4.766 17 O -0.873 6.873 18 C -0.322 4.322 19 H 0.284 0.716 20 H 0.074 0.926 21 H 0.081 0.919 22 H 0.111 0.889 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.816 -1.590 -3.436 8.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.381 5.381 2 C -0.174 4.174 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.446 4.446 8 H 0.141 0.859 9 N 0.086 4.914 10 N -0.064 5.064 11 N -0.182 5.182 12 C -0.199 4.199 13 C -0.233 4.233 14 C -0.040 4.040 15 C -0.561 4.561 16 S 1.434 4.566 17 O -0.868 6.868 18 C -0.462 4.462 19 H 0.095 0.905 20 H 0.092 0.908 21 H 0.099 0.901 22 H 0.129 0.871 23 H 0.105 0.895 24 H 0.101 0.899 25 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.382 -1.464 -4.065 7.707 hybrid contribution 0.932 0.042 2.358 2.536 sum 7.315 -1.422 -1.706 7.644 Atomic orbital electron populations 1.70146 1.06522 1.29325 1.32111 1.25809 0.95789 1.00914 0.94841 0.85669 0.79505 0.79008 0.79289 1.19115 1.19796 1.18381 1.20201 0.92886 0.80589 1.50905 0.85867 1.46755 1.06603 1.04350 1.33731 1.82473 0.88692 1.06816 1.28393 1.74127 1.24837 1.01019 1.18179 1.19434 0.89618 0.92714 1.18134 1.20611 0.95042 0.86504 1.21097 1.19078 0.89923 0.92506 1.02515 1.27296 1.10551 1.06610 1.11682 1.70487 0.87207 0.86398 1.12540 1.93009 1.81464 1.28564 1.83741 1.25678 1.16704 0.96151 1.07638 0.90518 0.90788 0.90101 0.87110 0.89533 0.89932 0.86480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.54 11.91 55.50 0.66 -18.88 15 2 C 0.05 1.10 5.50 -17.51 -0.10 1.01 15 3 Si 0.94 17.06 29.55 -169.99 -5.02 12.04 15 4 H -0.27 -4.74 7.11 56.52 0.40 -4.34 15 5 H -0.27 -4.95 7.11 56.52 0.40 -4.55 15 6 H -0.26 -4.46 7.11 56.52 0.40 -4.06 15 7 C -0.31 -7.42 9.99 -14.69 -0.15 -7.57 15 8 H 0.12 2.57 7.22 -52.49 -0.38 2.20 15 9 N -0.14 -3.67 3.79 -7.86 -0.03 -3.70 15 10 N -0.09 -2.50 11.74 60.35 0.71 -1.79 15 11 N -0.32 -8.59 12.33 33.31 0.41 -8.18 15 12 C -0.05 -1.15 6.86 -82.71 -0.57 -1.71 15 13 C -0.10 -2.15 6.67 -81.70 -0.55 -2.69 15 14 C 0.00 0.00 5.49 -28.11 -0.15 -0.15 15 15 C -0.42 -5.99 6.48 37.07 0.24 -5.75 15 16 S 1.23 17.90 13.70 -107.50 -1.47 16.42 15 17 O -0.87 -16.92 18.14 -35.23 -0.64 -17.56 15 18 C -0.32 -5.76 6.84 36.33 0.25 -5.51 15 19 H 0.28 6.64 8.31 -40.82 -0.34 6.30 15 20 H 0.07 1.17 7.66 -51.93 -0.40 0.78 15 21 H 0.08 1.07 8.14 -51.93 -0.42 0.65 15 22 H 0.11 1.26 8.14 -51.93 -0.42 0.84 15 23 H 0.09 1.34 8.14 -51.93 -0.42 0.92 15 24 H 0.08 1.52 8.14 -51.93 -0.42 1.10 15 25 H 0.12 1.92 8.14 -51.93 -0.42 1.49 15 LS Contribution 234.20 15.07 3.53 3.53 Total: -1.00 -34.29 234.20 -4.90 -39.19 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -2.02 Total: 1.32 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: -1.02 Total: -22.38 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 1.75 Total: -32.56 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.64 Total: -17.56 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.02 Total: 12.04 kcal Atomic # 16 Polarization: 17.90 SS G_CDS: -1.47 Total: 16.42 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -34.29 -4.90 -39.19 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260678998.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.743 kcal (2) G-P(sol) polarization free energy of solvation -34.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds