Wall clock time and date at job start Mon Mar 30 2020 02:45:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31255 * 1
3 3 Si 1.86794 * 119.99953 * 2 1
4 4 H 1.48504 * 109.47111 * 274.97711 * 3 2 1
5 5 H 1.48499 * 109.47638 * 34.97698 * 3 2 1
6 6 H 1.48501 * 109.47138 * 154.97857 * 3 2 1
7 7 C 1.39012 * 119.99806 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99511 * 185.90008 * 7 2 1
9 9 N 1.37570 * 120.00358 * 5.89172 * 7 2 1
10 10 N 1.40175 * 126.84892 * 354.16268 * 9 7 2
11 11 N 1.28579 * 107.95087 * 180.21682 * 10 9 7
12 12 C 1.33912 * 110.06254 * 0.08266 * 11 10 9
13 13 C 1.34435 * 109.01468 * 359.65150 * 12 11 10
14 14 C 1.50414 * 129.00199 * 180.52164 * 13 12 11
15 15 C 1.52830 * 111.03088 * 340.72986 * 14 13 12
16 16 S 1.81875 * 108.82466 * 51.54573 * 15 14 13
17 17 O 1.42099 * 109.46614 * 179.69265 * 16 15 14
18 18 C 1.51351 * 124.22478 * 179.53495 * 12 11 10
19 19 H 0.97001 * 119.99936 * 359.97438 * 1 2 3
20 20 H 1.08994 * 109.17000 * 220.33264 * 14 13 12
21 21 H 1.08999 * 109.16854 * 101.13022 * 14 13 12
22 22 H 1.09000 * 109.60175 * 171.38966 * 15 14 13
23 23 H 1.08999 * 109.59709 * 291.70622 * 15 14 13
24 24 H 1.08997 * 109.67850 * 282.05375 * 18 12 11
25 25 H 1.09002 * 109.67292 * 42.55904 * 18 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3125 0.0000 0.0000
3 14 2.2465 1.6177 0.0000
4 1 2.3888 2.1071 -1.3948
5 1 1.5006 2.6201 0.8026
6 1 3.5927 1.4121 0.5922
7 6 2.0076 -1.2039 0.0005
8 1 3.0833 -1.2063 0.0967
9 7 1.3252 -2.3922 -0.1212
10 7 -0.0658 -2.5648 -0.1397
11 7 -0.3075 -3.8216 -0.2635
12 6 0.8415 -4.5063 -0.3278
13 6 1.8701 -3.6443 -0.2485
14 6 3.3470 -3.9268 -0.2863
15 6 3.6336 -5.3923 0.0386
16 16 2.6021 -6.4428 -1.0293
17 8 2.8632 -7.8100 -0.7432
18 6 0.9292 -6.0110 -0.4649
19 1 -0.4850 0.8401 0.0004
20 1 3.8513 -3.2933 0.4432
21 1 3.7294 -3.6994 -1.2814
22 1 4.6864 -5.6081 -0.1433
23 1 3.3955 -5.5883 1.0841
24 1 0.7382 -6.4793 0.5006
25 1 0.1946 -6.3567 -1.1922
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260678998.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:45:01
Heat of formation + Delta-G solvation = 21.578199 kcal
Electronic energy + Delta-G solvation = -13597.436566 eV
Core-core repulsion = 11124.349398 eV
Total energy + Delta-G solvation = -2473.087167 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 227.047 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-42.18985 -36.86676 -36.11023 -35.31303 -33.45514 -31.38778 -28.28569 -26.96499
-24.68460 -23.06776 -20.78290 -19.44791 -18.17599 -17.44087 -16.65994 -16.28231
-15.99364 -15.74365 -15.17454 -14.73156 -14.51962 -13.97930 -13.57376 -13.43648
-13.17254 -12.94013 -12.68241 -12.47261 -12.04175 -11.72061 -11.52305 -11.44299
-10.81260 -10.55736 -9.27569 -9.15472 -8.67671 -6.58586 0.66818 1.08268
1.42395 1.57290 1.62356 1.66653 2.07788 2.11128 2.67346 2.87958
2.94897 3.92417 4.03003 4.08324 4.31547 4.41794 4.52860 4.77921
4.96331 4.97696 5.11268 5.13204 5.35061 5.89402 6.00684 6.62906
7.20349 8.19911 8.33269
Molecular weight = 227.05amu
Principal moments of inertia in cm(-1)
A = 0.052576 B = 0.008248 C = 0.007250
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 532.437480 B = 3394.039822 C = 3861.168140
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.809 5.809
2 C -0.001 4.001
3 Si 1.026 2.974
4 H -0.260 1.260
5 H -0.278 1.278
6 H -0.236 1.236
7 C -0.332 4.332
8 H 0.156 0.844
9 N -0.160 5.160
10 N -0.151 5.151
11 N -0.363 5.363
12 C -0.054 4.054
13 C -0.097 4.097
14 C 0.000 4.000
15 C -0.420 4.420
16 S 1.315 4.685
17 O -0.913 6.913
18 C -0.336 4.336
19 H 0.287 0.713
20 H 0.083 0.917
21 H 0.120 0.880
22 H 0.153 0.847
23 H 0.074 0.926
24 H 0.073 0.927
25 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.100 -1.341 -3.920 11.848
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.436 5.436
2 C -0.217 4.217
3 Si 0.843 3.157
4 H -0.185 1.185
5 H -0.203 1.203
6 H -0.159 1.159
7 C -0.468 4.468
8 H 0.173 0.827
9 N 0.067 4.933
10 N -0.126 5.126
11 N -0.222 5.222
12 C -0.202 4.202
13 C -0.232 4.232
14 C -0.040 4.040
15 C -0.560 4.560
16 S 1.514 4.486
17 O -0.909 6.909
18 C -0.474 4.474
19 H 0.097 0.903
20 H 0.101 0.899
21 H 0.138 0.862
22 H 0.171 0.829
23 H 0.093 0.907
24 H 0.091 0.909
25 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges 9.632 -1.255 -4.547 10.725
hybrid contribution -0.031 -0.107 2.531 2.533
sum 9.600 -1.362 -2.017 9.904
Atomic orbital electron populations
1.70317 1.08952 1.30544 1.33831 1.27114 0.96394 1.04933 0.93224
0.84475 0.78655 0.73136 0.79429 1.18458 1.20329 1.15895 1.21070
0.94390 0.80560 1.50796 0.82721 1.47106 1.06224 1.06048 1.33902
1.82410 0.90860 1.07694 1.31682 1.74080 1.26975 1.01263 1.19921
1.20193 0.88895 0.94804 1.16356 1.21641 0.97808 0.84993 1.18726
1.19339 0.85785 0.93737 1.05146 1.27303 1.12850 1.05031 1.10768
1.70173 0.83854 0.84022 1.10585 1.92911 1.81473 1.31891 1.84581
1.25971 1.20558 0.93154 1.07716 0.90312 0.89874 0.86202 0.82931
0.90697 0.90861 0.85472
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.81 -43.19 11.91 21.66 0.26 -42.93 15
2 C 0.00 -0.07 5.50 84.96 0.47 0.40 15
3 Si 1.03 33.76 29.55 68.60 2.03 35.79 15
4 H -0.26 -8.24 7.11 99.48 0.71 -7.54 15
5 H -0.28 -9.27 7.11 99.48 0.71 -8.57 15
6 H -0.24 -6.82 7.11 99.48 0.71 -6.12 15
7 C -0.33 -15.66 9.99 83.98 0.84 -14.82 15
8 H 0.16 6.01 7.22 -2.91 -0.02 5.99 15
9 N -0.16 -8.30 3.79 -178.79 -0.68 -8.98 15
10 N -0.15 -8.99 11.74 37.02 0.43 -8.55 15
11 N -0.36 -20.15 12.33 -48.52 -0.60 -20.75 15
12 C -0.05 -2.43 6.86 41.58 0.29 -2.15 15
13 C -0.10 -4.15 6.67 40.77 0.27 -3.88 15
14 C 0.00 0.00 5.49 29.70 0.16 0.16 15
15 C -0.42 -10.15 6.48 71.93 0.47 -9.68 15
16 S 1.32 34.35 13.70 -56.49 -0.77 33.57 15
17 O -0.91 -32.99 18.14 -148.98 -2.70 -35.69 15
18 C -0.34 -11.82 6.84 71.44 0.49 -11.33 15
19 H 0.29 13.91 8.31 -92.71 -0.77 13.14 15
20 H 0.08 2.28 7.66 -2.39 -0.02 2.26 15
21 H 0.12 2.53 8.14 -2.39 -0.02 2.51 15
22 H 0.15 2.55 8.14 -2.39 -0.02 2.53 15
23 H 0.07 2.07 8.14 -2.39 -0.02 2.05 15
24 H 0.07 2.70 8.14 -2.39 -0.02 2.68 15
25 H 0.13 4.13 8.14 -2.39 -0.02 4.11 15
Total: -1.00 -77.95 234.20 2.16 -75.78
By element:
Atomic # 1 Polarization: 11.85 SS G_CDS: 1.21 Total: 13.06 kcal
Atomic # 6 Polarization: -44.27 SS G_CDS: 2.98 Total: -41.29 kcal
Atomic # 7 Polarization: -80.63 SS G_CDS: -0.58 Total: -81.22 kcal
Atomic # 8 Polarization: -32.99 SS G_CDS: -2.70 Total: -35.69 kcal
Atomic # 14 Polarization: 33.76 SS G_CDS: 2.03 Total: 35.79 kcal
Atomic # 16 Polarization: 34.35 SS G_CDS: -0.77 Total: 33.57 kcal
Total: -77.95 2.16 -75.78 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260678998.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 97.362 kcal
(2) G-P(sol) polarization free energy of solvation -77.947 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.416 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.784 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.578 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds