Wall clock time and date at job start Mon Mar 30 2020 02:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31255 * 1 3 3 Si 1.86794 * 119.99953 * 2 1 4 4 H 1.48504 * 109.47111 * 274.97711 * 3 2 1 5 5 H 1.48499 * 109.47638 * 34.97698 * 3 2 1 6 6 H 1.48501 * 109.47138 * 154.97857 * 3 2 1 7 7 C 1.39012 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99511 * 185.90008 * 7 2 1 9 9 N 1.37570 * 120.00358 * 5.89172 * 7 2 1 10 10 N 1.40175 * 126.84892 * 354.16268 * 9 7 2 11 11 N 1.28579 * 107.95087 * 180.21682 * 10 9 7 12 12 C 1.33912 * 110.06254 * 0.08266 * 11 10 9 13 13 C 1.34435 * 109.01468 * 359.65150 * 12 11 10 14 14 C 1.50414 * 129.00199 * 180.52164 * 13 12 11 15 15 C 1.52830 * 111.03088 * 340.72986 * 14 13 12 16 16 S 1.81875 * 108.82466 * 51.54573 * 15 14 13 17 17 O 1.42099 * 109.46614 * 179.69265 * 16 15 14 18 18 C 1.51351 * 124.22478 * 179.53495 * 12 11 10 19 19 H 0.97001 * 119.99936 * 359.97438 * 1 2 3 20 20 H 1.08994 * 109.17000 * 220.33264 * 14 13 12 21 21 H 1.08999 * 109.16854 * 101.13022 * 14 13 12 22 22 H 1.09000 * 109.60175 * 171.38966 * 15 14 13 23 23 H 1.08999 * 109.59709 * 291.70622 * 15 14 13 24 24 H 1.08997 * 109.67850 * 282.05375 * 18 12 11 25 25 H 1.09002 * 109.67292 * 42.55904 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2465 1.6177 0.0000 4 1 2.3888 2.1071 -1.3948 5 1 1.5006 2.6201 0.8026 6 1 3.5927 1.4121 0.5922 7 6 2.0076 -1.2039 0.0005 8 1 3.0833 -1.2063 0.0967 9 7 1.3252 -2.3922 -0.1212 10 7 -0.0658 -2.5648 -0.1397 11 7 -0.3075 -3.8216 -0.2635 12 6 0.8415 -4.5063 -0.3278 13 6 1.8701 -3.6443 -0.2485 14 6 3.3470 -3.9268 -0.2863 15 6 3.6336 -5.3923 0.0386 16 16 2.6021 -6.4428 -1.0293 17 8 2.8632 -7.8100 -0.7432 18 6 0.9292 -6.0110 -0.4649 19 1 -0.4850 0.8401 0.0004 20 1 3.8513 -3.2933 0.4432 21 1 3.7294 -3.6994 -1.2814 22 1 4.6864 -5.6081 -0.1433 23 1 3.3955 -5.5883 1.0841 24 1 0.7382 -6.4793 0.5006 25 1 0.1946 -6.3567 -1.1922 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260678998.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:01 Heat of formation + Delta-G solvation = 21.578199 kcal Electronic energy + Delta-G solvation = -13597.436566 eV Core-core repulsion = 11124.349398 eV Total energy + Delta-G solvation = -2473.087167 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.047 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.18985 -36.86676 -36.11023 -35.31303 -33.45514 -31.38778 -28.28569 -26.96499 -24.68460 -23.06776 -20.78290 -19.44791 -18.17599 -17.44087 -16.65994 -16.28231 -15.99364 -15.74365 -15.17454 -14.73156 -14.51962 -13.97930 -13.57376 -13.43648 -13.17254 -12.94013 -12.68241 -12.47261 -12.04175 -11.72061 -11.52305 -11.44299 -10.81260 -10.55736 -9.27569 -9.15472 -8.67671 -6.58586 0.66818 1.08268 1.42395 1.57290 1.62356 1.66653 2.07788 2.11128 2.67346 2.87958 2.94897 3.92417 4.03003 4.08324 4.31547 4.41794 4.52860 4.77921 4.96331 4.97696 5.11268 5.13204 5.35061 5.89402 6.00684 6.62906 7.20349 8.19911 8.33269 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.052576 B = 0.008248 C = 0.007250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.437480 B = 3394.039822 C = 3861.168140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C -0.001 4.001 3 Si 1.026 2.974 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.236 1.236 7 C -0.332 4.332 8 H 0.156 0.844 9 N -0.160 5.160 10 N -0.151 5.151 11 N -0.363 5.363 12 C -0.054 4.054 13 C -0.097 4.097 14 C 0.000 4.000 15 C -0.420 4.420 16 S 1.315 4.685 17 O -0.913 6.913 18 C -0.336 4.336 19 H 0.287 0.713 20 H 0.083 0.917 21 H 0.120 0.880 22 H 0.153 0.847 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.100 -1.341 -3.920 11.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.217 4.217 3 Si 0.843 3.157 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.159 1.159 7 C -0.468 4.468 8 H 0.173 0.827 9 N 0.067 4.933 10 N -0.126 5.126 11 N -0.222 5.222 12 C -0.202 4.202 13 C -0.232 4.232 14 C -0.040 4.040 15 C -0.560 4.560 16 S 1.514 4.486 17 O -0.909 6.909 18 C -0.474 4.474 19 H 0.097 0.903 20 H 0.101 0.899 21 H 0.138 0.862 22 H 0.171 0.829 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 9.632 -1.255 -4.547 10.725 hybrid contribution -0.031 -0.107 2.531 2.533 sum 9.600 -1.362 -2.017 9.904 Atomic orbital electron populations 1.70317 1.08952 1.30544 1.33831 1.27114 0.96394 1.04933 0.93224 0.84475 0.78655 0.73136 0.79429 1.18458 1.20329 1.15895 1.21070 0.94390 0.80560 1.50796 0.82721 1.47106 1.06224 1.06048 1.33902 1.82410 0.90860 1.07694 1.31682 1.74080 1.26975 1.01263 1.19921 1.20193 0.88895 0.94804 1.16356 1.21641 0.97808 0.84993 1.18726 1.19339 0.85785 0.93737 1.05146 1.27303 1.12850 1.05031 1.10768 1.70173 0.83854 0.84022 1.10585 1.92911 1.81473 1.31891 1.84581 1.25971 1.20558 0.93154 1.07716 0.90312 0.89874 0.86202 0.82931 0.90697 0.90861 0.85472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.19 11.91 21.66 0.26 -42.93 15 2 C 0.00 -0.07 5.50 84.96 0.47 0.40 15 3 Si 1.03 33.76 29.55 68.60 2.03 35.79 15 4 H -0.26 -8.24 7.11 99.48 0.71 -7.54 15 5 H -0.28 -9.27 7.11 99.48 0.71 -8.57 15 6 H -0.24 -6.82 7.11 99.48 0.71 -6.12 15 7 C -0.33 -15.66 9.99 83.98 0.84 -14.82 15 8 H 0.16 6.01 7.22 -2.91 -0.02 5.99 15 9 N -0.16 -8.30 3.79 -178.79 -0.68 -8.98 15 10 N -0.15 -8.99 11.74 37.02 0.43 -8.55 15 11 N -0.36 -20.15 12.33 -48.52 -0.60 -20.75 15 12 C -0.05 -2.43 6.86 41.58 0.29 -2.15 15 13 C -0.10 -4.15 6.67 40.77 0.27 -3.88 15 14 C 0.00 0.00 5.49 29.70 0.16 0.16 15 15 C -0.42 -10.15 6.48 71.93 0.47 -9.68 15 16 S 1.32 34.35 13.70 -56.49 -0.77 33.57 15 17 O -0.91 -32.99 18.14 -148.98 -2.70 -35.69 15 18 C -0.34 -11.82 6.84 71.44 0.49 -11.33 15 19 H 0.29 13.91 8.31 -92.71 -0.77 13.14 15 20 H 0.08 2.28 7.66 -2.39 -0.02 2.26 15 21 H 0.12 2.53 8.14 -2.39 -0.02 2.51 15 22 H 0.15 2.55 8.14 -2.39 -0.02 2.53 15 23 H 0.07 2.07 8.14 -2.39 -0.02 2.05 15 24 H 0.07 2.70 8.14 -2.39 -0.02 2.68 15 25 H 0.13 4.13 8.14 -2.39 -0.02 4.11 15 Total: -1.00 -77.95 234.20 2.16 -75.78 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 1.21 Total: 13.06 kcal Atomic # 6 Polarization: -44.27 SS G_CDS: 2.98 Total: -41.29 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -0.58 Total: -81.22 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -2.70 Total: -35.69 kcal Atomic # 14 Polarization: 33.76 SS G_CDS: 2.03 Total: 35.79 kcal Atomic # 16 Polarization: 34.35 SS G_CDS: -0.77 Total: 33.57 kcal Total: -77.95 2.16 -75.78 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260678998.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.362 kcal (2) G-P(sol) polarization free energy of solvation -77.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds