Wall clock time and date at job start Mon Mar 30 2020 03:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99972 * 2 1 4 4 H 1.48504 * 109.47207 * 270.00725 * 3 2 1 5 5 H 1.48497 * 109.47042 * 30.00263 * 3 2 1 6 6 H 1.48499 * 109.47391 * 150.00301 * 3 2 1 7 7 C 1.37873 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00045 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00079 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.40093 * 59.83380 * 9 7 2 11 11 C 1.53437 * 109.40449 * 179.57539 * 9 7 2 12 12 N 1.46526 * 108.13091 * 170.21878 * 11 9 7 13 13 C 1.34185 * 129.37016 * 163.37451 * 12 11 9 14 14 Cl 1.73600 * 125.76005 * 0.28867 * 13 12 11 15 15 N 1.30992 * 108.47727 * 180.27019 * 13 12 11 16 16 C 1.34567 * 109.34089 * 359.90305 * 15 13 12 17 17 C 1.33600 * 107.82286 * 359.97438 * 16 15 13 18 18 C 1.50679 * 129.43547 * 180.13081 * 17 16 15 19 19 N 1.46934 * 109.40257 * 299.99994 * 9 7 2 20 20 H 0.96998 * 119.99683 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.73164 * 289.88359 * 11 9 7 22 22 H 1.09002 * 109.72530 * 50.55933 * 11 9 7 23 23 H 1.07998 * 126.08956 * 179.97438 * 16 15 13 24 24 H 1.08998 * 109.77257 * 44.78316 * 18 17 16 25 25 H 1.09002 * 109.77156 * 283.99919 * 18 17 16 26 26 H 1.00895 * 111.00462 * 292.75472 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6223 -2.5542 -0.8892 11 6 2.2495 -3.6642 -0.0119 12 7 1.5059 -4.9043 0.2249 13 6 1.8793 -6.1750 0.0097 14 17 3.4109 -6.6885 -0.6262 15 7 0.8933 -6.9627 0.3608 16 6 -0.1333 -6.2181 0.8107 17 6 0.2289 -4.9343 0.7358 18 6 -0.5446 -3.6979 1.1143 19 7 0.4074 -2.5756 1.2000 20 1 -0.4849 0.8401 0.0004 21 1 2.7474 -3.7127 -0.9804 22 1 2.9892 -3.5224 0.7760 23 1 -1.0813 -6.5917 1.1685 24 1 -1.0281 -3.8465 2.0797 25 1 -1.2961 -3.4859 0.3537 26 1 0.9708 -2.6429 2.0343 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260814633.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:02 Heat of formation + Delta-G solvation = 62.413406 kcal Electronic energy + Delta-G solvation = -13659.091224 eV Core-core repulsion = 11185.731098 eV Total energy + Delta-G solvation = -2473.360126 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.052 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.93225 -36.79894 -36.45779 -32.79630 -32.56406 -29.95662 -27.83156 -25.16124 -23.86632 -21.54625 -21.03012 -18.97676 -17.39842 -16.29467 -15.48148 -14.74989 -14.34566 -14.13058 -13.95127 -13.40327 -13.12976 -12.58334 -12.25630 -11.63867 -11.31396 -11.19284 -11.10790 -10.90368 -10.78197 -10.24943 -9.66821 -9.35221 -9.16701 -8.61044 -7.94685 -7.33968 -6.09818 -4.27085 1.63992 2.27525 3.22800 3.28123 3.29509 3.31254 3.38387 4.31765 4.98552 5.11478 5.33492 5.48607 5.59268 5.70376 5.88352 6.06790 6.11935 6.28703 6.67108 6.92836 7.01820 7.29627 7.68024 7.85105 8.14607 8.24401 8.47248 8.83254 9.43729 10.95197 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.040228 B = 0.008264 C = 0.006996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.867385 B = 3387.309180 C = 4001.404487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.089 3.911 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.219 3.781 10 H 0.049 0.951 11 C 0.065 3.935 12 N -0.433 5.433 13 C 0.232 3.768 14 Cl 0.017 6.983 15 N -0.481 5.481 16 C -0.029 4.029 17 C -0.030 4.030 18 C 0.127 3.873 19 N -0.644 5.644 20 H 0.260 0.740 21 H 0.085 0.915 22 H 0.080 0.920 23 H 0.174 0.826 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.323 0.677 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.958 -7.165 1.053 7.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.120 4.120 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.582 4.582 8 H 0.078 0.922 9 C 0.110 3.890 10 H 0.067 0.933 11 C -0.058 4.058 12 N -0.119 5.119 13 C -0.054 4.054 14 Cl 0.044 6.956 15 N -0.204 5.204 16 C -0.177 4.177 17 C -0.148 4.148 18 C -0.005 4.005 19 N -0.271 5.271 20 H 0.070 0.930 21 H 0.104 0.896 22 H 0.099 0.901 23 H 0.191 0.809 24 H 0.102 0.898 25 H 0.106 0.894 26 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.597 -7.337 0.671 7.539 hybrid contribution 1.344 0.802 0.052 1.566 sum 2.941 -6.535 0.723 7.203 Atomic orbital electron populations 1.70075 1.05838 1.26330 1.45305 1.24907 0.94687 0.98836 0.93565 0.86637 0.79935 0.83430 0.78134 1.20621 1.21078 1.19866 1.20708 0.92366 0.89262 1.55884 0.92242 1.19514 0.88744 0.89928 0.90768 0.93297 1.23432 0.97695 0.82374 1.02344 1.45589 1.13696 1.06702 1.45885 1.22780 0.92293 0.81780 1.08573 1.98370 1.22822 1.89774 1.84602 1.70367 0.99677 1.32621 1.17736 1.21742 0.98972 0.88976 1.07978 1.22792 0.86908 0.99956 1.05161 1.20957 0.95324 0.82954 1.01270 1.61044 1.21649 1.39206 1.05193 0.93026 0.89638 0.90140 0.80851 0.89847 0.89420 0.85925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.65 12.77 55.43 0.71 -21.94 15 2 C 0.09 2.27 5.39 -17.82 -0.10 2.18 15 3 Si 0.89 19.83 29.54 -169.99 -5.02 14.81 15 4 H -0.28 -6.23 7.11 56.52 0.40 -5.82 15 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 15 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 7 C -0.54 -13.53 8.75 -34.44 -0.30 -13.83 15 8 H 0.06 1.45 7.74 -52.48 -0.41 1.04 15 9 C 0.22 4.95 2.27 -68.62 -0.16 4.79 15 10 H 0.05 1.25 8.07 -51.93 -0.42 0.83 15 11 C 0.06 1.25 6.28 -3.80 -0.02 1.23 15 12 N -0.43 -8.26 3.14 -110.45 -0.35 -8.61 15 13 C 0.23 4.33 8.58 -90.74 -0.78 3.55 15 14 Cl 0.02 0.26 29.17 -51.86 -1.51 -1.25 15 15 N -0.48 -9.20 11.28 -12.02 -0.14 -9.33 15 16 C -0.03 -0.50 11.84 -17.98 -0.21 -0.71 15 17 C -0.03 -0.55 6.67 -81.65 -0.54 -1.09 15 18 C 0.13 2.28 6.98 -4.71 -0.03 2.25 15 19 N -0.64 -13.75 5.80 -108.58 -0.63 -14.38 15 20 H 0.26 6.71 8.31 -40.82 -0.34 6.38 15 21 H 0.09 1.59 8.14 -51.93 -0.42 1.17 15 22 H 0.08 1.51 8.12 -51.93 -0.42 1.09 15 23 H 0.17 2.42 8.06 -52.49 -0.42 2.00 15 24 H 0.08 1.29 8.14 -51.93 -0.42 0.87 15 25 H 0.09 1.64 8.14 -51.93 -0.42 1.22 15 26 H 0.32 6.67 8.79 -39.29 -0.35 6.33 15 LS Contribution 243.30 15.07 3.67 3.67 Total: -1.00 -27.36 243.30 -7.84 -35.20 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -2.42 Total: 3.48 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -2.15 Total: -1.64 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.41 Total: -54.27 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -1.51 Total: -1.25 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -27.36 -7.84 -35.20 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260814633.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.610 kcal (2) G-P(sol) polarization free energy of solvation -27.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds