Wall clock time and date at job start Mon Mar 30 2020 03:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99972 * 2 1 4 4 H 1.48504 * 109.47207 * 270.00725 * 3 2 1 5 5 H 1.48497 * 109.47042 * 30.00263 * 3 2 1 6 6 H 1.48499 * 109.47391 * 150.00301 * 3 2 1 7 7 C 1.37873 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00045 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00079 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.40093 * 59.83380 * 9 7 2 11 11 C 1.53437 * 109.40449 * 179.57539 * 9 7 2 12 12 N 1.46526 * 108.13091 * 170.21878 * 11 9 7 13 13 C 1.34185 * 129.37016 * 163.37451 * 12 11 9 14 14 Cl 1.73600 * 125.76005 * 0.28867 * 13 12 11 15 15 N 1.30992 * 108.47727 * 180.27019 * 13 12 11 16 16 C 1.34567 * 109.34089 * 359.90305 * 15 13 12 17 17 C 1.33600 * 107.82286 * 359.97438 * 16 15 13 18 18 C 1.50679 * 129.43547 * 180.13081 * 17 16 15 19 19 N 1.46934 * 109.40257 * 299.99994 * 9 7 2 20 20 H 0.96998 * 119.99683 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.73164 * 289.88359 * 11 9 7 22 22 H 1.09002 * 109.72530 * 50.55933 * 11 9 7 23 23 H 1.07998 * 126.08956 * 179.97438 * 16 15 13 24 24 H 1.08998 * 109.77257 * 44.78316 * 18 17 16 25 25 H 1.09002 * 109.77156 * 283.99919 * 18 17 16 26 26 H 1.00895 * 111.00462 * 292.75472 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6223 -2.5542 -0.8892 11 6 2.2495 -3.6642 -0.0119 12 7 1.5059 -4.9043 0.2249 13 6 1.8793 -6.1750 0.0097 14 17 3.4109 -6.6885 -0.6262 15 7 0.8933 -6.9627 0.3608 16 6 -0.1333 -6.2181 0.8107 17 6 0.2289 -4.9343 0.7358 18 6 -0.5446 -3.6979 1.1143 19 7 0.4074 -2.5756 1.2000 20 1 -0.4849 0.8401 0.0004 21 1 2.7474 -3.7127 -0.9804 22 1 2.9892 -3.5224 0.7760 23 1 -1.0813 -6.5917 1.1685 24 1 -1.0281 -3.8465 2.0797 25 1 -1.2961 -3.4859 0.3537 26 1 0.9708 -2.6429 2.0343 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260814633.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:02 Heat of formation + Delta-G solvation = 44.914774 kcal Electronic energy + Delta-G solvation = -13659.850022 eV Core-core repulsion = 11185.731098 eV Total energy + Delta-G solvation = -2474.118924 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.052 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.37112 -38.27574 -37.92309 -34.52831 -34.18971 -31.58101 -29.37833 -26.94063 -25.40231 -23.18764 -22.49744 -20.52991 -19.05593 -17.93673 -17.02073 -16.52720 -15.88497 -15.75750 -15.44707 -14.88815 -14.61612 -14.24841 -13.73063 -13.24157 -12.91646 -12.69834 -12.62848 -12.58699 -12.42278 -12.00607 -11.25095 -11.14383 -10.67141 -10.55153 -9.34381 -8.97920 -8.03659 -6.25984 0.27584 0.83624 1.47174 1.49858 1.57669 1.87850 1.89913 2.47270 3.17437 3.63138 3.75816 3.94292 4.05930 4.14669 4.45831 4.58893 4.66184 4.80110 5.12996 5.30713 5.57273 5.71594 5.81550 6.04358 6.45557 6.72968 6.82500 6.97712 7.47946 9.00887 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.040228 B = 0.008264 C = 0.006996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.867385 B = 3387.309180 C = 4001.404487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.043 3.957 3 Si 0.952 3.048 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.555 4.555 8 H 0.062 0.938 9 C 0.224 3.776 10 H 0.012 0.988 11 C 0.078 3.922 12 N -0.441 5.441 13 C 0.223 3.777 14 Cl 0.039 6.961 15 N -0.498 5.498 16 C -0.021 4.021 17 C -0.045 4.045 18 C 0.135 3.865 19 N -0.661 5.661 20 H 0.258 0.742 21 H 0.090 0.910 22 H 0.088 0.912 23 H 0.207 0.793 24 H 0.113 0.887 25 H 0.077 0.923 26 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.462 -7.648 1.539 8.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.162 4.162 3 Si 0.778 3.222 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.594 4.594 8 H 0.080 0.920 9 C 0.116 3.884 10 H 0.030 0.970 11 C -0.045 4.045 12 N -0.127 5.127 13 C -0.063 4.063 14 Cl 0.067 6.933 15 N -0.222 5.222 16 C -0.168 4.168 17 C -0.162 4.162 18 C 0.004 3.996 19 N -0.288 5.288 20 H 0.067 0.933 21 H 0.108 0.892 22 H 0.106 0.894 23 H 0.224 0.776 24 H 0.131 0.869 25 H 0.095 0.905 26 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.110 -7.833 1.158 8.194 hybrid contribution 1.192 0.875 -0.122 1.483 sum 3.302 -6.958 1.037 7.771 Atomic orbital electron populations 1.70192 1.07129 1.26806 1.46798 1.25597 0.95356 1.01806 0.93432 0.85676 0.78815 0.79721 0.77952 1.20496 1.21322 1.19232 1.21071 0.92746 0.90434 1.55107 0.91956 1.19189 0.88776 0.90531 0.89942 0.97012 1.23124 0.96798 0.81686 1.02919 1.45593 1.14106 1.06664 1.46346 1.23122 0.93248 0.81554 1.08363 1.98375 1.21202 1.89518 1.84214 1.70420 1.00283 1.33017 1.18430 1.22291 0.99632 0.88366 1.06555 1.22882 0.86926 1.00381 1.06050 1.20923 0.94306 0.81882 1.02522 1.60806 1.21970 1.41330 1.04677 0.93289 0.89166 0.89383 0.77626 0.86895 0.90533 0.85531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.43 12.77 21.45 0.27 -47.16 15 2 C 0.04 2.22 5.39 84.65 0.46 2.67 15 3 Si 0.95 40.55 29.54 68.60 2.03 42.58 15 4 H -0.28 -11.74 7.11 99.48 0.71 -11.03 15 5 H -0.29 -12.26 7.11 99.48 0.71 -11.55 15 6 H -0.27 -11.04 7.11 99.48 0.71 -10.33 15 7 C -0.55 -27.54 8.75 25.60 0.22 -27.31 15 8 H 0.06 2.98 7.74 -2.91 -0.02 2.96 15 9 C 0.22 10.18 2.27 44.31 0.10 10.28 15 10 H 0.01 0.62 8.07 -2.39 -0.02 0.60 15 11 C 0.08 2.97 6.28 86.52 0.54 3.51 15 12 N -0.44 -16.29 3.14 -503.34 -1.58 -17.87 15 13 C 0.22 7.96 8.58 180.39 1.55 9.50 15 14 Cl 0.04 1.16 29.17 -2.72 -0.08 1.08 15 15 N -0.50 -18.07 11.28 -191.93 -2.17 -20.23 15 16 C -0.02 -0.68 11.84 83.22 0.99 0.30 15 17 C -0.05 -1.59 6.67 40.60 0.27 -1.31 15 18 C 0.13 4.72 6.98 85.45 0.60 5.31 15 19 N -0.66 -27.97 5.80 -497.43 -2.89 -30.86 15 20 H 0.26 13.46 8.31 -92.71 -0.77 12.69 15 21 H 0.09 3.30 8.14 -2.39 -0.02 3.28 15 22 H 0.09 3.20 8.12 -2.39 -0.02 3.18 15 23 H 0.21 5.08 8.06 -2.91 -0.02 5.06 15 24 H 0.11 3.24 8.14 -2.39 -0.02 3.23 15 25 H 0.08 2.84 8.14 -2.39 -0.02 2.83 15 26 H 0.33 13.27 8.79 -89.70 -0.79 12.48 15 Total: -1.00 -56.83 243.30 0.73 -56.10 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.42 Total: 13.38 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 4.72 Total: 2.97 kcal Atomic # 7 Polarization: -109.75 SS G_CDS: -6.36 Total: -116.11 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Atomic # 17 Polarization: 1.16 SS G_CDS: -0.08 Total: 1.08 kcal Total: -56.83 0.73 -56.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260814633.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.014 kcal (2) G-P(sol) polarization free energy of solvation -56.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds