Wall clock time and date at job start Mon Mar 30 2020 03:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30859 * 1 3 3 Si 1.86800 * 120.00022 * 2 1 4 4 H 1.48497 * 109.46982 * 274.98079 * 3 2 1 5 5 H 1.48503 * 109.47137 * 34.98349 * 3 2 1 6 6 H 1.48500 * 109.46896 * 154.98009 * 3 2 1 7 7 C 1.39879 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99846 * 186.02810 * 7 2 1 9 9 C 1.41387 * 120.00035 * 6.03194 * 7 2 1 10 10 N 1.35258 * 126.13312 * 174.30895 * 9 7 2 11 11 C 1.30219 * 107.15748 * 180.02562 * 10 9 7 12 12 N 1.35265 * 108.08101 * 359.93854 * 11 10 9 13 13 N 1.28531 * 108.48791 * 0.07861 * 12 11 10 14 14 C 1.46726 * 124.36554 * 180.10608 * 12 11 10 15 15 C 1.53205 * 108.86199 * 17.39974 * 14 12 11 16 16 H 1.09004 * 109.45529 * 69.27373 * 15 14 12 17 17 Cl 1.80295 * 109.45928 * 189.24433 * 15 14 12 18 18 C 1.53156 * 109.52756 * 309.26179 * 15 14 12 19 19 C 1.50912 * 127.51903 * 179.97438 * 11 10 9 20 20 H 0.97000 * 119.99819 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.58355 * 257.58094 * 14 12 11 22 22 H 1.08998 * 109.56161 * 137.20766 * 14 12 11 23 23 H 1.09005 * 109.52544 * 189.37736 * 18 15 14 24 24 H 1.09004 * 109.52722 * 309.51669 * 18 15 14 25 25 H 1.08996 * 109.71000 * 76.05020 * 19 11 10 26 26 H 1.09003 * 109.74807 * 315.43447 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.3848 2.1072 -1.3948 5 1 1.4967 2.6200 0.8027 6 1 3.5888 1.4120 0.5921 7 6 2.0080 -1.2114 0.0005 8 1 3.0835 -1.2139 0.0988 9 6 1.3069 -2.4325 -0.1276 10 7 1.8600 -3.6607 -0.2502 11 6 0.8817 -4.5151 -0.3428 12 7 -0.2823 -3.8292 -0.2775 13 7 -0.0121 -2.5792 -0.1491 14 6 -1.6119 -4.4459 -0.3450 15 6 -1.4774 -5.9454 -0.0609 16 1 -1.2112 -6.0942 0.9856 17 17 -3.0463 -6.7648 -0.4040 18 6 -0.3851 -6.5398 -0.9548 19 6 0.9812 -6.0131 -0.4961 20 1 -0.4850 0.8401 0.0004 21 1 -2.0327 -4.2991 -1.3398 22 1 -2.2639 -3.9901 0.4001 23 1 -0.4014 -7.6269 -0.8761 24 1 -0.5616 -6.2467 -1.9897 25 1 1.2472 -6.4636 0.4602 26 1 1.7384 -6.2577 -1.2410 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260995110.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:17 Heat of formation + Delta-G solvation = 43.128795 kcal Electronic energy + Delta-G solvation = -13529.925451 eV Core-core repulsion = 11055.729082 eV Total energy + Delta-G solvation = -2474.196370 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.33455 -38.24469 -36.46547 -35.15389 -34.37123 -30.95233 -30.30234 -27.97457 -24.82979 -23.37330 -22.48061 -20.42013 -18.73098 -17.68969 -17.04687 -16.59858 -15.80155 -15.56251 -15.35055 -14.98785 -14.41533 -13.40428 -13.19323 -13.11382 -12.85823 -12.68962 -12.52746 -12.23811 -11.94607 -11.79150 -11.51611 -11.35667 -11.19556 -10.51449 -10.35356 -9.54933 -8.41856 -6.43620 0.85544 1.37237 1.41613 1.54174 1.57852 2.23937 2.31585 2.36312 3.16264 3.37332 3.49073 3.59843 3.83519 4.06365 4.29350 4.35367 4.53464 4.75504 4.88803 5.00206 5.08446 5.18765 5.45756 6.23773 6.35697 6.54295 6.89701 7.06859 8.32015 8.61088 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.057336 B = 0.006954 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.229550 B = 4025.743601 C = 4463.402143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.027 3.973 3 Si 0.997 3.003 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.478 4.478 8 H 0.079 0.921 9 C 0.284 3.716 10 N -0.587 5.587 11 C 0.172 3.828 12 N -0.349 5.349 13 N -0.381 5.381 14 C 0.128 3.872 15 C 0.000 4.000 16 H 0.121 0.879 17 Cl -0.152 7.152 18 C -0.115 4.115 19 C -0.021 4.021 20 H 0.277 0.723 21 H 0.089 0.911 22 H 0.090 0.910 23 H 0.131 0.869 24 H 0.078 0.922 25 H 0.109 0.891 26 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.464 -12.364 -1.009 13.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.188 4.188 3 Si 0.818 3.182 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.182 1.182 7 C -0.520 4.520 8 H 0.097 0.903 9 C 0.023 3.977 10 N -0.317 5.317 11 C -0.104 4.104 12 N -0.145 5.145 13 N -0.217 5.217 14 C 0.006 3.994 15 C -0.044 4.044 16 H 0.139 0.861 17 Cl -0.125 7.125 18 C -0.153 4.153 19 C -0.061 4.061 20 H 0.087 0.913 21 H 0.107 0.893 22 H 0.109 0.891 23 H 0.149 0.851 24 H 0.097 0.903 25 H 0.127 0.873 26 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.962 -11.910 -0.985 12.940 hybrid contribution 0.021 0.877 -0.008 0.877 sum -4.941 -11.033 -0.994 12.130 Atomic orbital electron populations 1.70075 1.08635 1.29009 1.37044 1.26723 0.95757 1.04101 0.92235 0.84980 0.78733 0.75474 0.79051 1.18992 1.19208 1.18153 1.18569 0.94238 0.88148 1.51021 0.90251 1.21381 0.86459 0.92232 0.97640 1.71083 1.31524 1.00984 1.28107 1.25467 0.82953 0.98728 1.03281 1.47324 1.07332 1.04817 1.55015 1.75203 1.17395 0.95931 1.33179 1.22027 0.80965 0.92093 1.04342 1.24198 0.85867 0.90354 1.04015 0.86142 1.98730 1.36622 1.80614 1.96526 1.22057 0.90359 1.03583 0.99289 1.20322 0.98999 0.81809 1.04977 0.91350 0.89316 0.89150 0.85104 0.90295 0.87287 0.87177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.33 11.96 21.81 0.26 -48.07 15 2 C 0.03 1.55 5.49 85.24 0.47 2.02 15 3 Si 1.00 42.48 29.56 68.60 2.03 44.51 15 4 H -0.27 -10.84 7.11 99.48 0.71 -10.13 15 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 15 6 H -0.26 -10.60 7.11 99.48 0.71 -9.89 15 7 C -0.48 -29.40 9.49 23.44 0.22 -29.18 15 8 H 0.08 4.74 7.85 -2.91 -0.02 4.72 15 9 C 0.28 17.55 7.64 134.76 1.03 18.58 15 10 N -0.59 -32.39 11.43 -185.02 -2.12 -34.51 15 11 C 0.17 7.56 7.67 138.21 1.06 8.62 15 12 N -0.35 -16.23 3.75 -337.23 -1.26 -17.49 15 13 N -0.38 -22.50 10.40 -56.05 -0.58 -23.08 15 14 C 0.13 4.25 6.60 86.40 0.57 4.82 15 15 C 0.00 0.01 3.22 30.71 0.10 0.11 15 16 H 0.12 2.60 8.11 -2.38 -0.02 2.58 15 17 Cl -0.15 -3.10 28.61 -2.72 -0.08 -3.18 15 18 C -0.12 -2.30 5.38 30.79 0.17 -2.14 15 19 C -0.02 -0.57 6.33 30.06 0.19 -0.38 15 20 H 0.28 14.81 8.30 -92.71 -0.77 14.04 15 21 H 0.09 2.84 8.14 -2.39 -0.02 2.82 15 22 H 0.09 3.05 8.14 -2.39 -0.02 3.03 15 23 H 0.13 1.65 8.14 -2.38 -0.02 1.63 15 24 H 0.08 1.67 8.12 -2.38 -0.02 1.65 15 25 H 0.11 2.46 8.14 -2.39 -0.02 2.44 15 26 H 0.11 2.69 8.14 -2.39 -0.02 2.67 15 Total: -1.00 -77.08 241.95 3.25 -73.84 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: 1.19 Total: 5.55 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 3.80 Total: 2.44 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -3.70 Total: -123.15 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 17 Polarization: -3.10 SS G_CDS: -0.08 Total: -3.18 kcal Total: -77.08 3.25 -73.84 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995110.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.964 kcal (2) G-P(sol) polarization free energy of solvation -77.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds