Wall clock time and date at job start Mon Mar 30 2020 03:06:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30859 * 1
3 3 Si 1.86800 * 120.00022 * 2 1
4 4 H 1.48497 * 109.46982 * 274.98079 * 3 2 1
5 5 H 1.48503 * 109.47137 * 34.98349 * 3 2 1
6 6 H 1.48500 * 109.46896 * 154.98009 * 3 2 1
7 7 C 1.39879 * 119.99864 * 179.97438 * 2 1 3
8 8 H 1.07999 * 119.99846 * 186.02810 * 7 2 1
9 9 C 1.41387 * 120.00035 * 6.03194 * 7 2 1
10 10 N 1.35258 * 126.13312 * 174.30895 * 9 7 2
11 11 C 1.30219 * 107.15748 * 180.02562 * 10 9 7
12 12 N 1.35265 * 108.08101 * 359.93854 * 11 10 9
13 13 N 1.28531 * 108.48791 * 0.07861 * 12 11 10
14 14 C 1.46726 * 124.36554 * 180.10608 * 12 11 10
15 15 C 1.53205 * 108.86199 * 17.39974 * 14 12 11
16 16 H 1.09004 * 109.45529 * 69.27373 * 15 14 12
17 17 Cl 1.80295 * 109.45928 * 189.24433 * 15 14 12
18 18 C 1.53156 * 109.52756 * 309.26179 * 15 14 12
19 19 C 1.50912 * 127.51903 * 179.97438 * 11 10 9
20 20 H 0.97000 * 119.99819 * 359.97438 * 1 2 3
21 21 H 1.09001 * 109.58355 * 257.58094 * 14 12 11
22 22 H 1.08998 * 109.56161 * 137.20766 * 14 12 11
23 23 H 1.09005 * 109.52544 * 189.37736 * 18 15 14
24 24 H 1.09004 * 109.52722 * 309.51669 * 18 15 14
25 25 H 1.08996 * 109.71000 * 76.05020 * 19 11 10
26 26 H 1.09003 * 109.74807 * 315.43447 * 19 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3086 0.0000 0.0000
3 14 2.2426 1.6177 0.0000
4 1 2.3848 2.1072 -1.3948
5 1 1.4967 2.6200 0.8027
6 1 3.5888 1.4120 0.5921
7 6 2.0080 -1.2114 0.0005
8 1 3.0835 -1.2139 0.0988
9 6 1.3069 -2.4325 -0.1276
10 7 1.8600 -3.6607 -0.2502
11 6 0.8817 -4.5151 -0.3428
12 7 -0.2823 -3.8292 -0.2775
13 7 -0.0121 -2.5792 -0.1491
14 6 -1.6119 -4.4459 -0.3450
15 6 -1.4774 -5.9454 -0.0609
16 1 -1.2112 -6.0942 0.9856
17 17 -3.0463 -6.7648 -0.4040
18 6 -0.3851 -6.5398 -0.9548
19 6 0.9812 -6.0131 -0.4961
20 1 -0.4850 0.8401 0.0004
21 1 -2.0327 -4.2991 -1.3398
22 1 -2.2639 -3.9901 0.4001
23 1 -0.4014 -7.6269 -0.8761
24 1 -0.5616 -6.2467 -1.9897
25 1 1.2472 -6.4636 0.4602
26 1 1.7384 -6.2577 -1.2410
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260995110.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:06:17
Heat of formation + Delta-G solvation = 43.128795 kcal
Electronic energy + Delta-G solvation = -13529.925451 eV
Core-core repulsion = 11055.729082 eV
Total energy + Delta-G solvation = -2474.196370 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 227.052 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-43.33455 -38.24469 -36.46547 -35.15389 -34.37123 -30.95233 -30.30234 -27.97457
-24.82979 -23.37330 -22.48061 -20.42013 -18.73098 -17.68969 -17.04687 -16.59858
-15.80155 -15.56251 -15.35055 -14.98785 -14.41533 -13.40428 -13.19323 -13.11382
-12.85823 -12.68962 -12.52746 -12.23811 -11.94607 -11.79150 -11.51611 -11.35667
-11.19556 -10.51449 -10.35356 -9.54933 -8.41856 -6.43620 0.85544 1.37237
1.41613 1.54174 1.57852 2.23937 2.31585 2.36312 3.16264 3.37332
3.49073 3.59843 3.83519 4.06365 4.29350 4.35367 4.53464 4.75504
4.88803 5.00206 5.08446 5.18765 5.45756 6.23773 6.35697 6.54295
6.89701 7.06859 8.32015 8.61088
Molecular weight = 227.05amu
Principal moments of inertia in cm(-1)
A = 0.057336 B = 0.006954 C = 0.006272
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 488.229550 B = 4025.743601 C = 4463.402143
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.818 5.818
2 C 0.027 3.973
3 Si 0.997 3.003
4 H -0.265 1.265
5 H -0.267 1.267
6 H -0.258 1.258
7 C -0.478 4.478
8 H 0.079 0.921
9 C 0.284 3.716
10 N -0.587 5.587
11 C 0.172 3.828
12 N -0.349 5.349
13 N -0.381 5.381
14 C 0.128 3.872
15 C 0.000 4.000
16 H 0.121 0.879
17 Cl -0.152 7.152
18 C -0.115 4.115
19 C -0.021 4.021
20 H 0.277 0.723
21 H 0.089 0.911
22 H 0.090 0.910
23 H 0.131 0.869
24 H 0.078 0.922
25 H 0.109 0.891
26 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.464 -12.364 -1.009 13.183
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.448 5.448
2 C -0.188 4.188
3 Si 0.818 3.182
4 H -0.190 1.190
5 H -0.192 1.192
6 H -0.182 1.182
7 C -0.520 4.520
8 H 0.097 0.903
9 C 0.023 3.977
10 N -0.317 5.317
11 C -0.104 4.104
12 N -0.145 5.145
13 N -0.217 5.217
14 C 0.006 3.994
15 C -0.044 4.044
16 H 0.139 0.861
17 Cl -0.125 7.125
18 C -0.153 4.153
19 C -0.061 4.061
20 H 0.087 0.913
21 H 0.107 0.893
22 H 0.109 0.891
23 H 0.149 0.851
24 H 0.097 0.903
25 H 0.127 0.873
26 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges -4.962 -11.910 -0.985 12.940
hybrid contribution 0.021 0.877 -0.008 0.877
sum -4.941 -11.033 -0.994 12.130
Atomic orbital electron populations
1.70075 1.08635 1.29009 1.37044 1.26723 0.95757 1.04101 0.92235
0.84980 0.78733 0.75474 0.79051 1.18992 1.19208 1.18153 1.18569
0.94238 0.88148 1.51021 0.90251 1.21381 0.86459 0.92232 0.97640
1.71083 1.31524 1.00984 1.28107 1.25467 0.82953 0.98728 1.03281
1.47324 1.07332 1.04817 1.55015 1.75203 1.17395 0.95931 1.33179
1.22027 0.80965 0.92093 1.04342 1.24198 0.85867 0.90354 1.04015
0.86142 1.98730 1.36622 1.80614 1.96526 1.22057 0.90359 1.03583
0.99289 1.20322 0.98999 0.81809 1.04977 0.91350 0.89316 0.89150
0.85104 0.90295 0.87287 0.87177
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.82 -48.33 11.96 21.81 0.26 -48.07 15
2 C 0.03 1.55 5.49 85.24 0.47 2.02 15
3 Si 1.00 42.48 29.56 68.60 2.03 44.51 15
4 H -0.27 -10.84 7.11 99.48 0.71 -10.13 15
5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 15
6 H -0.26 -10.60 7.11 99.48 0.71 -9.89 15
7 C -0.48 -29.40 9.49 23.44 0.22 -29.18 15
8 H 0.08 4.74 7.85 -2.91 -0.02 4.72 15
9 C 0.28 17.55 7.64 134.76 1.03 18.58 15
10 N -0.59 -32.39 11.43 -185.02 -2.12 -34.51 15
11 C 0.17 7.56 7.67 138.21 1.06 8.62 15
12 N -0.35 -16.23 3.75 -337.23 -1.26 -17.49 15
13 N -0.38 -22.50 10.40 -56.05 -0.58 -23.08 15
14 C 0.13 4.25 6.60 86.40 0.57 4.82 15
15 C 0.00 0.01 3.22 30.71 0.10 0.11 15
16 H 0.12 2.60 8.11 -2.38 -0.02 2.58 15
17 Cl -0.15 -3.10 28.61 -2.72 -0.08 -3.18 15
18 C -0.12 -2.30 5.38 30.79 0.17 -2.14 15
19 C -0.02 -0.57 6.33 30.06 0.19 -0.38 15
20 H 0.28 14.81 8.30 -92.71 -0.77 14.04 15
21 H 0.09 2.84 8.14 -2.39 -0.02 2.82 15
22 H 0.09 3.05 8.14 -2.39 -0.02 3.03 15
23 H 0.13 1.65 8.14 -2.38 -0.02 1.63 15
24 H 0.08 1.67 8.12 -2.38 -0.02 1.65 15
25 H 0.11 2.46 8.14 -2.39 -0.02 2.44 15
26 H 0.11 2.69 8.14 -2.39 -0.02 2.67 15
Total: -1.00 -77.08 241.95 3.25 -73.84
By element:
Atomic # 1 Polarization: 4.35 SS G_CDS: 1.19 Total: 5.55 kcal
Atomic # 6 Polarization: -1.36 SS G_CDS: 3.80 Total: 2.44 kcal
Atomic # 7 Polarization: -119.45 SS G_CDS: -3.70 Total: -123.15 kcal
Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal
Atomic # 17 Polarization: -3.10 SS G_CDS: -0.08 Total: -3.18 kcal
Total: -77.08 3.25 -73.84 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260995110.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 116.964 kcal
(2) G-P(sol) polarization free energy of solvation -77.083 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.882 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.836 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.129 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds