Wall clock time and date at job start Mon Mar 30 2020 03:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30849 * 1 3 3 Si 1.86805 * 120.00200 * 2 1 4 4 H 1.48502 * 109.46840 * 239.99834 * 3 2 1 5 5 H 1.48500 * 109.46836 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47164 * 119.99829 * 3 2 1 7 7 C 1.39882 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00058 * 179.97438 * 7 2 1 9 9 C 1.41384 * 119.99980 * 0.02562 * 7 2 1 10 10 N 1.35753 * 126.17770 * 359.80604 * 9 7 2 11 11 C 1.30218 * 107.12160 * 179.97438 * 10 9 7 12 12 N 1.35430 * 108.02775 * 0.15541 * 11 10 9 13 13 N 1.28534 * 108.62591 * 359.94941 * 12 11 10 14 14 C 1.46736 * 124.24196 * 179.79693 * 12 11 10 15 15 C 1.53200 * 108.95570 * 342.77834 * 14 12 11 16 16 H 1.08998 * 109.46052 * 290.64976 * 15 14 12 17 17 Cl 1.80297 * 109.45919 * 170.67943 * 15 14 12 18 18 C 1.53157 * 109.54054 * 50.67226 * 15 14 12 19 19 C 1.50909 * 127.52414 * 180.27511 * 11 10 9 20 20 H 0.96998 * 120.00190 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.57664 * 222.90288 * 14 12 11 22 22 H 1.08998 * 109.57178 * 102.65188 * 14 12 11 23 23 H 1.09002 * 109.52435 * 50.42637 * 18 15 14 24 24 H 1.08999 * 109.53038 * 170.63320 * 18 15 14 25 25 H 1.09010 * 109.70679 * 44.55609 * 19 11 10 26 26 H 1.09000 * 109.71519 * 283.92221 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.0963 1.6963 -1.2125 5 1 1.2776 2.7465 -0.0006 6 1 3.0963 1.6964 1.2125 7 6 2.0079 -1.2114 0.0005 8 1 3.0879 -1.2114 0.0001 9 6 1.3010 -2.4358 0.0005 10 7 -0.0487 -2.5819 0.0038 11 6 -0.2959 -3.8604 0.0020 12 7 0.8889 -4.5164 0.0011 13 7 1.8380 -3.6497 0.0013 14 6 1.0237 -5.9776 0.0034 15 6 -0.3080 -6.5995 0.4356 16 1 -0.4821 -6.3881 1.4907 17 17 -0.2480 -8.3836 0.1824 18 6 -1.4462 -6.0041 -0.3985 19 6 -1.6455 -4.5356 -0.0016 20 1 -0.4850 0.8400 -0.0004 21 1 1.8075 -6.2710 0.7017 22 1 1.2795 -6.3222 -0.9985 23 1 -1.1922 -6.0642 -1.4568 24 1 -2.3648 -6.5601 -0.2111 25 1 -2.2999 -4.0454 -0.7225 26 1 -2.0869 -4.4804 0.9935 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260995111.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:20 Heat of formation + Delta-G solvation = 44.682420 kcal Electronic energy + Delta-G solvation = -13507.853316 eV Core-core repulsion = 11033.724316 eV Total energy + Delta-G solvation = -2474.128999 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.052 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.26078 -38.22708 -36.45417 -35.25242 -34.14218 -31.09088 -30.23804 -27.95540 -24.88564 -23.24300 -22.52289 -20.16356 -19.02156 -17.41377 -17.12294 -16.66101 -15.77944 -15.55870 -15.34514 -14.98499 -14.34721 -13.36649 -13.23408 -13.13332 -12.81168 -12.75574 -12.47740 -12.14746 -11.98624 -11.78798 -11.51959 -11.35521 -11.19239 -10.34938 -10.26591 -9.63647 -8.36456 -6.40951 0.84965 1.29997 1.42966 1.56550 1.57987 2.21279 2.34853 2.45053 3.17341 3.38133 3.53187 3.61099 3.84717 4.07326 4.28652 4.35500 4.53699 4.74944 4.88395 4.99035 5.07889 5.26191 5.44045 6.21128 6.41378 6.54997 6.97448 7.05911 8.30167 8.62361 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.076881 B = 0.006510 C = 0.006064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.113534 B = 4300.245394 C = 4615.929092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.035 3.965 3 Si 0.995 3.005 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.487 4.487 8 H 0.076 0.924 9 C 0.300 3.700 10 N -0.519 5.519 11 C 0.164 3.836 12 N -0.348 5.348 13 N -0.464 5.464 14 C 0.127 3.873 15 C 0.000 4.000 16 H 0.119 0.881 17 Cl -0.151 7.151 18 C -0.114 4.114 19 C -0.021 4.021 20 H 0.278 0.722 21 H 0.095 0.905 22 H 0.091 0.909 23 H 0.079 0.921 24 H 0.128 0.872 25 H 0.103 0.897 26 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.188 -11.576 0.418 12.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.183 4.183 3 Si 0.815 3.185 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.186 1.186 7 C -0.529 4.529 8 H 0.094 0.906 9 C 0.040 3.960 10 N -0.247 5.247 11 C -0.113 4.113 12 N -0.144 5.144 13 N -0.302 5.302 14 C 0.005 3.995 15 C -0.045 4.045 16 H 0.137 0.863 17 Cl -0.124 7.124 18 C -0.152 4.152 19 C -0.061 4.061 20 H 0.088 0.912 21 H 0.114 0.886 22 H 0.109 0.891 23 H 0.097 0.903 24 H 0.146 0.854 25 H 0.121 0.879 26 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.924 -11.564 0.400 12.575 hybrid contribution 0.588 0.507 -0.030 0.777 sum -4.336 -11.057 0.370 11.883 Atomic orbital electron populations 1.70114 1.08447 1.29073 1.35333 1.26722 0.95817 1.03905 0.91856 0.85091 0.78336 0.75266 0.79759 1.18649 1.18928 1.18604 1.18497 0.93651 0.88139 1.52568 0.90575 1.21480 0.86900 0.91733 0.95864 1.71786 1.15366 1.13285 1.24240 1.25872 0.92402 0.89522 1.03490 1.46894 1.03832 1.06732 1.56928 1.74430 1.17053 0.99504 1.39222 1.22054 0.98840 0.74383 1.04235 1.24169 0.95327 0.81010 1.03954 0.86277 1.98729 1.98890 1.16899 1.97869 1.22033 0.99117 0.93755 1.00264 1.20251 0.87509 0.93383 1.04931 0.91214 0.88646 0.89092 0.90256 0.85362 0.87891 0.87794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -46.48 11.92 21.81 0.26 -46.22 15 2 C 0.03 1.96 5.49 85.24 0.47 2.42 15 3 Si 1.00 41.83 29.56 68.60 2.03 43.86 15 4 H -0.26 -10.67 7.11 99.48 0.71 -9.96 15 5 H -0.27 -10.35 7.11 99.48 0.71 -9.64 15 6 H -0.26 -10.63 7.11 99.48 0.71 -9.93 15 7 C -0.49 -29.81 9.50 23.44 0.22 -29.59 15 8 H 0.08 4.53 7.84 -2.91 -0.02 4.51 15 9 C 0.30 18.53 7.64 134.60 1.03 19.56 15 10 N -0.52 -30.12 9.63 -184.55 -1.78 -31.89 15 11 C 0.16 7.50 7.68 138.15 1.06 8.56 15 12 N -0.35 -15.78 3.75 -337.09 -1.26 -17.04 15 13 N -0.46 -26.19 12.22 -55.75 -0.68 -26.87 15 14 C 0.13 3.96 6.60 86.40 0.57 4.53 15 15 C 0.00 0.00 3.22 30.71 0.10 0.10 15 16 H 0.12 2.58 8.12 -2.39 -0.02 2.56 15 17 Cl -0.15 -2.98 28.61 -2.72 -0.08 -3.05 15 18 C -0.11 -2.41 5.38 30.79 0.17 -2.24 15 19 C -0.02 -0.62 6.33 30.05 0.19 -0.43 15 20 H 0.28 14.54 8.30 -92.71 -0.77 13.78 15 21 H 0.10 2.88 8.14 -2.39 -0.02 2.86 15 22 H 0.09 2.68 8.14 -2.39 -0.02 2.66 15 23 H 0.08 1.74 8.12 -2.39 -0.02 1.72 15 24 H 0.13 1.81 8.14 -2.39 -0.02 1.79 15 25 H 0.10 2.96 8.14 -2.38 -0.02 2.94 15 26 H 0.10 2.71 8.14 -2.39 -0.02 2.69 15 Total: -1.00 -75.82 241.92 3.48 -72.34 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: 1.19 Total: 5.97 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 3.80 Total: 2.91 kcal Atomic # 7 Polarization: -118.57 SS G_CDS: -3.46 Total: -122.03 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 17 Polarization: -2.98 SS G_CDS: -0.08 Total: -3.05 kcal Total: -75.82 3.48 -72.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995111.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.021 kcal (2) G-P(sol) polarization free energy of solvation -75.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds