Wall clock time and date at job start Mon Mar 30 2020 03:03:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31522 * 1
3 3 Si 1.86798 * 119.99872 * 2 1
4 4 H 1.48496 * 109.46994 * 179.97438 * 3 2 1
5 5 H 1.48496 * 109.46934 * 299.99735 * 3 2 1
6 6 H 1.48501 * 109.47209 * 59.99954 * 3 2 1
7 7 C 1.37877 * 119.99667 * 179.97438 * 2 1 3
8 8 H 1.08007 * 119.99495 * 185.15024 * 7 2 1
9 9 C 1.50697 * 120.00361 * 5.15028 * 7 2 1
10 10 H 1.08996 * 109.59786 * 335.35634 * 9 7 2
11 11 C 1.53341 * 109.57844 * 95.85330 * 9 7 2
12 12 C 1.53132 * 109.61005 * 170.11740 * 11 9 7
13 13 C 1.53471 * 109.34771 * 290.36419 * 12 11 9
14 14 C 1.50795 * 108.10380 * 48.81163 * 13 12 11
15 15 N 1.29748 * 128.69104 * 164.13221 * 14 13 12
16 16 N 1.28888 * 109.66492 * 180.10546 * 15 14 13
17 17 C 1.30973 * 109.91028 * 359.95642 * 16 15 14
18 18 Cl 1.73596 * 126.52691 * 179.97438 * 17 16 15
19 19 N 1.35245 * 106.94870 * 359.95840 * 17 16 15
20 20 H 0.97000 * 120.00181 * 4.96821 * 1 2 3
21 21 H 1.09000 * 109.46106 * 50.07128 * 11 9 7
22 22 H 1.09001 * 109.44139 * 290.15337 * 11 9 7
23 23 H 1.08989 * 109.49245 * 170.40119 * 12 11 9
24 24 H 1.08997 * 109.48848 * 50.32415 * 12 11 9
25 25 H 1.09000 * 109.73474 * 168.46009 * 13 12 11
26 26 H 1.08998 * 109.73826 * 289.10733 * 13 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7091 1.3464 0.0006
5 1 1.8904 2.3963 -1.2125
6 1 1.8904 2.3965 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0813 -1.1959 0.0845
9 6 1.2556 -2.4966 -0.1160
10 1 0.2340 -2.3640 0.2400
11 6 1.2393 -2.9507 -1.5806
12 6 0.7006 -4.3813 -1.6691
13 6 1.7255 -5.3491 -1.0622
14 6 2.1476 -4.8040 0.2790
15 7 2.7649 -5.4129 1.2442
16 7 2.9421 -4.5988 2.2275
17 6 2.4426 -3.4251 1.9304
18 17 2.4447 -2.0149 2.9428
19 7 1.9252 -3.5207 0.6845
20 1 -0.4850 0.8369 -0.0727
21 1 2.2523 -2.9189 -1.9819
22 1 0.5990 -2.2853 -2.1596
23 1 0.5290 -4.6414 -2.7135
24 1 -0.2370 -4.4516 -1.1177
25 1 1.2724 -6.3321 -0.9338
26 1 2.5924 -5.4263 -1.7183
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261019129.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:03:18
Heat of formation + Delta-G solvation = 40.124995 kcal
Electronic energy + Delta-G solvation = -13955.391600 eV
Core-core repulsion = 11481.064976 eV
Total energy + Delta-G solvation = -2474.326624 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 227.052 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-44.07508 -38.26088 -37.87535 -35.11998 -34.01811 -31.66682 -30.05499 -27.33656
-24.55229 -23.67808 -22.95609 -20.38464 -18.94976 -18.26525 -17.08433 -16.64235
-16.02884 -15.52588 -14.96344 -14.81995 -14.65373 -13.46633 -13.28201 -13.14964
-12.90918 -12.72137 -12.50025 -12.34058 -12.20056 -11.83213 -11.81125 -11.54950
-11.27890 -10.88138 -10.57321 -9.93549 -8.35375 -6.47664 0.40255 0.83620
1.33682 1.40810 1.49493 1.70210 2.04075 2.33717 3.01442 3.43632
3.79263 4.09084 4.15702 4.31719 4.53745 4.70574 4.81453 4.95014
4.98868 5.10021 5.21611 5.31093 5.50812 5.56457 5.88234 6.02954
6.62311 7.22326 7.59205 8.72147
Molecular weight = 227.05amu
Principal moments of inertia in cm(-1)
A = 0.027091 B = 0.013351 C = 0.009734
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1033.286837 B = 2096.750332 C = 2875.792541
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.903 5.903
2 C 0.050 3.950
3 Si 0.944 3.056
4 H -0.271 1.271
5 H -0.269 1.269
6 H -0.280 1.280
7 C -0.532 4.532
8 H 0.050 0.950
9 C 0.239 3.761
10 H 0.059 0.941
11 C -0.111 4.111
12 C -0.120 4.120
13 C -0.024 4.024
14 C 0.174 3.826
15 N -0.322 5.322
16 N -0.322 5.322
17 C 0.216 3.784
18 Cl 0.052 6.948
19 N -0.443 5.443
20 H 0.273 0.727
21 H 0.061 0.939
22 H 0.076 0.924
23 H 0.113 0.887
24 H 0.059 0.941
25 H 0.120 0.880
26 H 0.112 0.888
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.198 -4.069 -4.114 5.790
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.540 5.540
2 C -0.154 4.154
3 Si 0.769 3.231
4 H -0.195 1.195
5 H -0.194 1.194
6 H -0.205 1.205
7 C -0.570 4.570
8 H 0.068 0.932
9 C 0.140 3.860
10 H 0.077 0.923
11 C -0.150 4.150
12 C -0.158 4.158
13 C -0.064 4.064
14 C -0.094 4.094
15 N -0.164 5.164
16 N -0.168 5.168
17 C -0.077 4.077
18 Cl 0.080 6.920
19 N -0.134 5.134
20 H 0.082 0.918
21 H 0.079 0.921
22 H 0.095 0.905
23 H 0.132 0.868
24 H 0.077 0.923
25 H 0.138 0.862
26 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges 0.677 -4.827 -3.197 5.829
hybrid contribution -0.243 2.398 -0.118 2.414
sum 0.434 -2.429 -3.315 4.132
Atomic orbital electron populations
1.69925 1.06946 1.28883 1.48232 1.25407 0.95354 1.01731 0.92932
0.85707 0.79239 0.79900 0.78290 1.19492 1.19388 1.20540 1.21080
0.92964 0.90061 1.52894 0.93166 1.19794 0.93649 0.83892 0.88656
0.92287 1.21910 1.01620 0.96578 0.94852 1.21785 0.97515 0.93201
1.03319 1.20486 1.00804 0.99914 0.85155 1.25669 1.00693 0.82394
1.00682 1.73833 1.18935 1.25041 0.98586 1.74409 1.22356 0.97826
1.22171 1.24904 1.03031 0.92906 0.86874 1.98381 1.97235 1.33087
1.63347 1.47538 1.41149 1.12558 1.12170 0.91754 0.92072 0.90537
0.86836 0.92260 0.86207 0.87010
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -45.95 12.76 21.45 0.27 -45.68 15
2 C 0.05 2.42 5.45 84.65 0.46 2.88 15
3 Si 0.94 39.67 29.54 68.60 2.03 41.70 15
4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 15
5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 15
6 H -0.28 -11.75 7.11 99.48 0.71 -11.04 15
7 C -0.53 -25.95 6.68 25.60 0.17 -25.78 15
8 H 0.05 2.58 7.82 -2.91 -0.02 2.56 15
9 C 0.24 10.70 3.17 44.41 0.14 10.84 15
10 H 0.06 2.98 7.24 -2.39 -0.02 2.97 15
11 C -0.11 -3.98 5.23 30.75 0.16 -3.82 15
12 C -0.12 -3.21 5.95 30.80 0.18 -3.03 15
13 C -0.02 -0.66 6.34 30.04 0.19 -0.47 15
14 C 0.17 6.81 7.77 137.94 1.07 7.89 15
15 N -0.32 -14.04 12.19 -49.92 -0.61 -14.65 15
16 N -0.32 -15.00 12.23 -52.52 -0.64 -15.64 15
17 C 0.22 9.96 8.40 180.06 1.51 11.47 15
18 Cl 0.05 2.23 27.75 -2.72 -0.08 2.16 15
19 N -0.44 -19.59 2.98 -488.85 -1.46 -21.04 15
20 H 0.27 13.17 8.32 -92.71 -0.77 12.40 15
21 H 0.06 2.17 8.09 -2.39 -0.02 2.15 15
22 H 0.08 2.82 8.14 -2.39 -0.02 2.80 15
23 H 0.11 2.18 8.14 -2.39 -0.02 2.16 15
24 H 0.06 1.68 8.12 -2.39 -0.02 1.66 15
25 H 0.12 2.58 8.14 -2.39 -0.02 2.56 15
26 H 0.11 2.55 8.14 -2.39 -0.02 2.53 15
Total: -1.00 -57.86 239.92 4.60 -53.26
By element:
Atomic # 1 Polarization: -1.29 SS G_CDS: 1.19 Total: -0.10 kcal
Atomic # 6 Polarization: -3.91 SS G_CDS: 3.89 Total: -0.01 kcal
Atomic # 7 Polarization: -94.57 SS G_CDS: -2.43 Total: -97.01 kcal
Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal
Atomic # 17 Polarization: 2.23 SS G_CDS: -0.08 Total: 2.16 kcal
Total: -57.86 4.60 -53.26 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261019129.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.384 kcal
(2) G-P(sol) polarization free energy of solvation -57.862 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.522 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.603 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.259 kcal
(6) G-S(sol) free energy of system = (1) + (5) 40.125 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds