Wall clock time and date at job start Mon Mar 30 2020 03:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 119.99872 * 2 1 4 4 H 1.48496 * 109.46994 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46934 * 299.99735 * 3 2 1 6 6 H 1.48501 * 109.47209 * 59.99954 * 3 2 1 7 7 C 1.37877 * 119.99667 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99495 * 185.15024 * 7 2 1 9 9 C 1.50697 * 120.00361 * 5.15028 * 7 2 1 10 10 H 1.08996 * 109.59786 * 335.35634 * 9 7 2 11 11 C 1.53341 * 109.57844 * 95.85330 * 9 7 2 12 12 C 1.53132 * 109.61005 * 170.11740 * 11 9 7 13 13 C 1.53471 * 109.34771 * 290.36419 * 12 11 9 14 14 C 1.50795 * 108.10380 * 48.81163 * 13 12 11 15 15 N 1.29748 * 128.69104 * 164.13221 * 14 13 12 16 16 N 1.28888 * 109.66492 * 180.10546 * 15 14 13 17 17 C 1.30973 * 109.91028 * 359.95642 * 16 15 14 18 18 Cl 1.73596 * 126.52691 * 179.97438 * 17 16 15 19 19 N 1.35245 * 106.94870 * 359.95840 * 17 16 15 20 20 H 0.97000 * 120.00181 * 4.96821 * 1 2 3 21 21 H 1.09000 * 109.46106 * 50.07128 * 11 9 7 22 22 H 1.09001 * 109.44139 * 290.15337 * 11 9 7 23 23 H 1.08989 * 109.49245 * 170.40119 * 12 11 9 24 24 H 1.08997 * 109.48848 * 50.32415 * 12 11 9 25 25 H 1.09000 * 109.73474 * 168.46009 * 13 12 11 26 26 H 1.08998 * 109.73826 * 289.10733 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0813 -1.1959 0.0845 9 6 1.2556 -2.4966 -0.1160 10 1 0.2340 -2.3640 0.2400 11 6 1.2393 -2.9507 -1.5806 12 6 0.7006 -4.3813 -1.6691 13 6 1.7255 -5.3491 -1.0622 14 6 2.1476 -4.8040 0.2790 15 7 2.7649 -5.4129 1.2442 16 7 2.9421 -4.5988 2.2275 17 6 2.4426 -3.4251 1.9304 18 17 2.4447 -2.0149 2.9428 19 7 1.9252 -3.5207 0.6845 20 1 -0.4850 0.8369 -0.0727 21 1 2.2523 -2.9189 -1.9819 22 1 0.5990 -2.2853 -2.1596 23 1 0.5290 -4.6414 -2.7135 24 1 -0.2370 -4.4516 -1.1177 25 1 1.2724 -6.3321 -0.9338 26 1 2.5924 -5.4263 -1.7183 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261019129.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:18 Heat of formation + Delta-G solvation = 40.124995 kcal Electronic energy + Delta-G solvation = -13955.391600 eV Core-core repulsion = 11481.064976 eV Total energy + Delta-G solvation = -2474.326624 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.07508 -38.26088 -37.87535 -35.11998 -34.01811 -31.66682 -30.05499 -27.33656 -24.55229 -23.67808 -22.95609 -20.38464 -18.94976 -18.26525 -17.08433 -16.64235 -16.02884 -15.52588 -14.96344 -14.81995 -14.65373 -13.46633 -13.28201 -13.14964 -12.90918 -12.72137 -12.50025 -12.34058 -12.20056 -11.83213 -11.81125 -11.54950 -11.27890 -10.88138 -10.57321 -9.93549 -8.35375 -6.47664 0.40255 0.83620 1.33682 1.40810 1.49493 1.70210 2.04075 2.33717 3.01442 3.43632 3.79263 4.09084 4.15702 4.31719 4.53745 4.70574 4.81453 4.95014 4.98868 5.10021 5.21611 5.31093 5.50812 5.56457 5.88234 6.02954 6.62311 7.22326 7.59205 8.72147 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.027091 B = 0.013351 C = 0.009734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.286837 B = 2096.750332 C = 2875.792541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.050 3.950 3 Si 0.944 3.056 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.050 0.950 9 C 0.239 3.761 10 H 0.059 0.941 11 C -0.111 4.111 12 C -0.120 4.120 13 C -0.024 4.024 14 C 0.174 3.826 15 N -0.322 5.322 16 N -0.322 5.322 17 C 0.216 3.784 18 Cl 0.052 6.948 19 N -0.443 5.443 20 H 0.273 0.727 21 H 0.061 0.939 22 H 0.076 0.924 23 H 0.113 0.887 24 H 0.059 0.941 25 H 0.120 0.880 26 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.198 -4.069 -4.114 5.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.154 4.154 3 Si 0.769 3.231 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.205 1.205 7 C -0.570 4.570 8 H 0.068 0.932 9 C 0.140 3.860 10 H 0.077 0.923 11 C -0.150 4.150 12 C -0.158 4.158 13 C -0.064 4.064 14 C -0.094 4.094 15 N -0.164 5.164 16 N -0.168 5.168 17 C -0.077 4.077 18 Cl 0.080 6.920 19 N -0.134 5.134 20 H 0.082 0.918 21 H 0.079 0.921 22 H 0.095 0.905 23 H 0.132 0.868 24 H 0.077 0.923 25 H 0.138 0.862 26 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.677 -4.827 -3.197 5.829 hybrid contribution -0.243 2.398 -0.118 2.414 sum 0.434 -2.429 -3.315 4.132 Atomic orbital electron populations 1.69925 1.06946 1.28883 1.48232 1.25407 0.95354 1.01731 0.92932 0.85707 0.79239 0.79900 0.78290 1.19492 1.19388 1.20540 1.21080 0.92964 0.90061 1.52894 0.93166 1.19794 0.93649 0.83892 0.88656 0.92287 1.21910 1.01620 0.96578 0.94852 1.21785 0.97515 0.93201 1.03319 1.20486 1.00804 0.99914 0.85155 1.25669 1.00693 0.82394 1.00682 1.73833 1.18935 1.25041 0.98586 1.74409 1.22356 0.97826 1.22171 1.24904 1.03031 0.92906 0.86874 1.98381 1.97235 1.33087 1.63347 1.47538 1.41149 1.12558 1.12170 0.91754 0.92072 0.90537 0.86836 0.92260 0.86207 0.87010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.95 12.76 21.45 0.27 -45.68 15 2 C 0.05 2.42 5.45 84.65 0.46 2.88 15 3 Si 0.94 39.67 29.54 68.60 2.03 41.70 15 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 15 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 15 6 H -0.28 -11.75 7.11 99.48 0.71 -11.04 15 7 C -0.53 -25.95 6.68 25.60 0.17 -25.78 15 8 H 0.05 2.58 7.82 -2.91 -0.02 2.56 15 9 C 0.24 10.70 3.17 44.41 0.14 10.84 15 10 H 0.06 2.98 7.24 -2.39 -0.02 2.97 15 11 C -0.11 -3.98 5.23 30.75 0.16 -3.82 15 12 C -0.12 -3.21 5.95 30.80 0.18 -3.03 15 13 C -0.02 -0.66 6.34 30.04 0.19 -0.47 15 14 C 0.17 6.81 7.77 137.94 1.07 7.89 15 15 N -0.32 -14.04 12.19 -49.92 -0.61 -14.65 15 16 N -0.32 -15.00 12.23 -52.52 -0.64 -15.64 15 17 C 0.22 9.96 8.40 180.06 1.51 11.47 15 18 Cl 0.05 2.23 27.75 -2.72 -0.08 2.16 15 19 N -0.44 -19.59 2.98 -488.85 -1.46 -21.04 15 20 H 0.27 13.17 8.32 -92.71 -0.77 12.40 15 21 H 0.06 2.17 8.09 -2.39 -0.02 2.15 15 22 H 0.08 2.82 8.14 -2.39 -0.02 2.80 15 23 H 0.11 2.18 8.14 -2.39 -0.02 2.16 15 24 H 0.06 1.68 8.12 -2.39 -0.02 1.66 15 25 H 0.12 2.58 8.14 -2.39 -0.02 2.56 15 26 H 0.11 2.55 8.14 -2.39 -0.02 2.53 15 Total: -1.00 -57.86 239.92 4.60 -53.26 By element: Atomic # 1 Polarization: -1.29 SS G_CDS: 1.19 Total: -0.10 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 3.89 Total: -0.01 kcal Atomic # 7 Polarization: -94.57 SS G_CDS: -2.43 Total: -97.01 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Atomic # 17 Polarization: 2.23 SS G_CDS: -0.08 Total: 2.16 kcal Total: -57.86 4.60 -53.26 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261019129.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.384 kcal (2) G-P(sol) polarization free energy of solvation -57.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds