Wall clock time and date at job start Mon Mar 30 2020 03:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 119.99988 * 2 1 4 4 H 1.48503 * 109.47305 * 270.00638 * 3 2 1 5 5 H 1.48505 * 109.47144 * 30.00778 * 3 2 1 6 6 H 1.48503 * 109.47099 * 150.00665 * 3 2 1 7 7 C 1.37880 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99924 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99822 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.73091 * 300.64604 * 9 7 2 11 11 C 1.53476 * 109.73488 * 180.02562 * 9 7 2 12 12 C 1.53128 * 109.35105 * 191.48708 * 11 9 7 13 13 C 1.53340 * 109.61262 * 69.62997 * 12 11 9 14 14 N 1.46220 * 108.68727 * 309.64099 * 13 12 11 15 15 C 1.35240 * 129.05009 * 197.10925 * 14 13 12 16 16 Cl 1.73595 * 126.52690 * 359.78623 * 15 14 13 17 17 N 1.30978 * 106.94965 * 179.82430 * 15 14 13 18 18 N 1.28886 * 109.90617 * 0.03947 * 17 15 14 19 19 C 1.29741 * 109.66677 * 0.04231 * 18 17 15 20 20 H 0.97000 * 120.00232 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.48612 * 311.45086 * 11 9 7 22 22 H 1.09002 * 109.49340 * 71.52015 * 11 9 7 23 23 H 1.09003 * 109.44037 * 189.66739 * 12 11 9 24 24 H 1.08998 * 109.44635 * 309.57592 * 12 11 9 25 25 H 1.09001 * 109.58686 * 189.89082 * 13 12 11 26 26 H 1.08994 * 109.61605 * 69.41170 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6144 -2.5565 0.8824 11 6 2.2429 -3.6703 -0.0005 12 6 1.4904 -4.9726 -0.2883 13 6 1.0121 -4.9795 -1.7451 14 7 0.3148 -3.7230 -2.0153 15 6 -0.5267 -3.4164 -3.0286 16 17 -1.0132 -4.4675 -4.3217 17 7 -0.9042 -2.1751 -2.8491 18 7 -0.3482 -1.6961 -1.7896 19 6 0.4063 -2.6006 -1.2455 20 1 -0.4850 0.8400 0.0004 21 1 2.9970 -3.5082 -0.7707 22 1 2.7265 -3.7374 0.9740 23 1 2.1549 -5.8202 -0.1204 24 1 0.6302 -5.0491 0.3767 25 1 0.3317 -5.8164 -1.9023 26 1 1.8697 -5.0724 -2.4114 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261025768.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:08 Heat of formation + Delta-G solvation = 56.207640 kcal Electronic energy + Delta-G solvation = -13953.335441 eV Core-core repulsion = 11479.706212 eV Total energy + Delta-G solvation = -2473.629228 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.83909 -38.12039 -38.01949 -35.55332 -33.34663 -31.43770 -29.94653 -27.07904 -24.29997 -23.61389 -22.88295 -20.28830 -18.78724 -17.84958 -17.30161 -16.62296 -16.16599 -15.40476 -14.95785 -14.63830 -14.54038 -13.48194 -13.34858 -12.97350 -12.85530 -12.69374 -12.35772 -12.17564 -12.10863 -11.67846 -11.56299 -11.26503 -10.83254 -10.74050 -10.41321 -9.66959 -8.00265 -6.17553 0.18350 0.96101 1.44273 1.46769 1.55016 2.01952 2.20596 2.50194 3.29758 3.60007 3.92045 4.05138 4.10925 4.39533 4.51757 4.67962 4.75047 4.98130 5.05982 5.20374 5.30875 5.42125 5.60808 5.82768 6.09776 6.24862 6.86455 7.51408 8.10139 9.01885 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.033562 B = 0.010517 C = 0.008535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.073775 B = 2661.796534 C = 3279.944652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.028 3.972 3 Si 0.947 3.053 4 H -0.291 1.291 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.557 4.557 8 H 0.066 0.934 9 C 0.118 3.882 10 H 0.032 0.968 11 C -0.109 4.109 12 C -0.125 4.125 13 C 0.096 3.904 14 N -0.481 5.481 15 C 0.182 3.818 16 Cl 0.060 6.940 17 N -0.341 5.341 18 N -0.271 5.271 19 C 0.230 3.770 20 H 0.257 0.743 21 H 0.058 0.942 22 H 0.086 0.914 23 H 0.129 0.871 24 H 0.066 0.934 25 H 0.114 0.886 26 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.352 -13.531 -2.820 14.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.179 4.179 3 Si 0.774 3.226 4 H -0.218 1.218 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.595 4.595 8 H 0.084 0.916 9 C 0.097 3.903 10 H 0.049 0.951 11 C -0.147 4.147 12 C -0.162 4.162 13 C -0.025 4.025 14 N -0.178 5.178 15 C -0.111 4.111 16 Cl 0.087 6.913 17 N -0.185 5.185 18 N -0.107 5.107 19 C -0.038 4.038 20 H 0.066 0.934 21 H 0.077 0.923 22 H 0.105 0.895 23 H 0.147 0.853 24 H 0.085 0.915 25 H 0.132 0.868 26 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.415 -12.229 -3.177 12.864 hybrid contribution 0.515 0.024 -0.245 0.570 sum 2.929 -12.205 -3.422 13.009 Atomic orbital electron populations 1.70147 1.06898 1.26837 1.44810 1.25722 0.95427 1.02289 0.94415 0.85736 0.79271 0.80192 0.77432 1.21764 1.21043 1.18255 1.21108 0.92987 0.90300 1.55106 0.91607 1.17663 0.91153 0.95843 0.85650 0.95070 1.21693 0.97450 0.92633 1.02931 1.21963 1.01616 0.99683 0.92950 1.22424 0.97796 0.82224 1.00050 1.46792 1.35960 1.15021 1.20020 1.25044 0.99563 0.93964 0.92494 1.98352 1.89725 1.61271 1.41923 1.74679 1.23623 1.05607 1.14595 1.74722 1.10262 1.23883 1.01859 1.26751 0.98298 0.80785 0.97917 0.93397 0.92341 0.89499 0.85279 0.91509 0.86810 0.87919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -51.25 10.73 21.45 0.23 -51.02 15 2 C 0.03 1.56 5.14 84.65 0.43 1.99 15 3 Si 0.95 44.67 29.54 68.60 2.03 46.70 15 4 H -0.29 -14.07 7.11 99.48 0.71 -13.37 15 5 H -0.28 -13.25 7.11 99.48 0.71 -12.54 15 6 H -0.26 -11.36 7.11 99.48 0.71 -10.66 15 7 C -0.56 -29.75 8.54 25.60 0.22 -29.53 15 8 H 0.07 3.37 7.75 -2.91 -0.02 3.35 15 9 C 0.12 5.59 2.48 -12.10 -0.03 5.56 15 10 H 0.03 1.63 8.14 -2.39 -0.02 1.61 15 11 C -0.11 -3.63 5.23 30.80 0.16 -3.47 15 12 C -0.12 -3.01 5.93 30.75 0.18 -2.82 15 13 C 0.10 2.46 6.94 86.55 0.60 3.06 15 14 N -0.48 -18.93 3.15 -507.31 -1.60 -20.52 15 15 C 0.18 7.52 8.72 180.06 1.57 9.10 15 16 Cl 0.06 1.78 29.22 -2.72 -0.08 1.70 15 17 N -0.34 -17.66 12.23 -52.52 -0.64 -18.30 15 18 N -0.27 -15.46 9.43 -49.92 -0.47 -15.93 15 19 C 0.23 11.43 6.90 137.94 0.95 12.38 15 20 H 0.26 15.09 8.31 -92.71 -0.77 14.32 15 21 H 0.06 1.96 8.08 -2.39 -0.02 1.95 15 22 H 0.09 2.60 8.14 -2.39 -0.02 2.58 15 23 H 0.13 1.93 8.14 -2.39 -0.02 1.91 15 24 H 0.07 1.71 8.12 -2.39 -0.02 1.69 15 25 H 0.11 2.24 8.14 -2.39 -0.02 2.22 15 26 H 0.10 2.23 8.14 -2.39 -0.02 2.21 15 Total: -1.00 -70.59 238.45 4.75 -65.84 By element: Atomic # 1 Polarization: -5.93 SS G_CDS: 1.19 Total: -4.73 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 4.09 Total: -3.74 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -2.48 Total: -105.77 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 17 Polarization: 1.78 SS G_CDS: -0.08 Total: 1.70 kcal Total: -70.59 4.75 -65.84 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261025768.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.046 kcal (2) G-P(sol) polarization free energy of solvation -70.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds