Wall clock time and date at job start Mon Mar 30 2020 03:06:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30687 * 1
3 3 Si 1.86800 * 120.00185 * 2 1
4 4 H 1.48499 * 109.47064 * 179.97438 * 3 2 1
5 5 H 1.48495 * 109.47167 * 299.99650 * 3 2 1
6 6 H 1.48506 * 109.47122 * 59.99534 * 3 2 1
7 7 C 1.40243 * 119.99923 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00280 * 180.02562 * 7 2 1
9 9 C 1.40125 * 119.99964 * 0.02562 * 7 2 1
10 10 N 1.33321 * 126.77756 * 359.81456 * 9 7 2
11 11 N 1.28854 * 109.42247 * 179.84925 * 10 9 7
12 12 C 1.30741 * 110.05736 * 0.24572 * 11 10 9
13 13 N 1.35535 * 107.82800 * 359.91858 * 12 11 10
14 14 C 1.46226 * 124.98553 * 180.14257 * 13 12 11
15 15 C 1.53326 * 108.72535 * 17.00658 * 14 13 12
16 16 H 1.09003 * 109.45743 * 69.78935 * 15 14 13
17 17 Cl 1.80304 * 109.45676 * 189.76059 * 15 14 13
18 18 C 1.53150 * 109.53460 * 309.78017 * 15 14 13
19 19 C 1.50891 * 128.21355 * 179.87823 * 12 11 10
20 20 H 0.96998 * 119.99930 * 0.02562 * 1 2 3
21 21 H 1.09005 * 109.58623 * 136.77656 * 14 13 12
22 22 H 1.08996 * 109.59366 * 257.07537 * 14 13 12
23 23 H 1.09003 * 109.49276 * 189.35722 * 18 15 14
24 24 H 1.08994 * 109.49303 * 309.41371 * 18 15 14
25 25 H 1.08998 * 109.72431 * 76.29396 * 19 12 11
26 26 H 1.09000 * 109.72216 * 315.61763 * 19 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3069 0.0000 0.0000
3 14 2.2409 1.6177 0.0000
4 1 3.7009 1.3463 0.0006
5 1 1.8823 2.3964 -1.2125
6 1 1.8821 2.3965 1.2125
7 6 2.0081 -1.2145 0.0005
8 1 3.0880 -1.2146 0.0010
9 6 1.3074 -2.4281 0.0005
10 7 -0.0165 -2.5854 0.0035
11 7 -0.2986 -3.8426 -0.0007
12 6 0.8016 -4.5490 -0.0013
13 7 1.8479 -3.6875 0.0010
14 6 3.2566 -4.0794 -0.0017
15 6 3.3583 -5.5475 -0.4321
16 1 3.1039 -5.6347 -1.4884
17 17 5.0425 -6.1352 -0.1692
18 6 2.3875 -6.3928 0.3977
19 6 0.9464 -6.0510 -0.0032
20 1 -0.4850 0.8400 -0.0004
21 1 3.8086 -3.4537 -0.7032
22 1 3.6712 -3.9599 0.9992
23 1 2.5758 -7.4503 0.2120
24 1 2.5319 -6.1781 1.4565
25 1 0.7401 -6.4392 -1.0006
26 1 0.2516 -6.4884 0.7137
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261040381.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:06:27
Heat of formation + Delta-G solvation = 47.096992 kcal
Electronic energy + Delta-G solvation = -13641.402576 eV
Core-core repulsion = 11167.378281 eV
Total energy + Delta-G solvation = -2474.024296 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 227.052 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-41.09642 -36.90473 -35.17234 -33.71234 -32.34261 -29.34287 -28.54197 -25.54632
-23.60045 -21.72915 -20.67898 -18.66947 -17.31853 -15.80635 -15.31888 -14.76982
-14.25849 -14.08991 -13.96534 -13.27206 -13.14619 -11.91638 -11.78990 -11.49697
-11.39201 -11.25352 -11.02874 -10.91343 -10.49725 -10.36469 -10.19249 -9.59046
-9.45060 -8.63638 -8.33439 -7.59024 -6.61941 -4.59241 2.08214 2.93826
3.07891 3.12268 3.46126 3.83907 4.07271 4.47012 4.53046 4.63500
4.99815 5.27253 5.34345 5.39994 5.64899 5.77499 5.89679 5.96129
6.13087 6.26927 6.93252 6.99935 7.27477 7.59806 8.11962 8.22583
8.74775 8.89398 10.31274 10.75118
Molecular weight = 227.05amu
Principal moments of inertia in cm(-1)
A = 0.033572 B = 0.008836 C = 0.007080
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 833.824743 B = 3168.093137 C = 3953.778212
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.737 5.737
2 C 0.080 3.920
3 Si 0.918 3.082
4 H -0.262 1.262
5 H -0.272 1.272
6 H -0.272 1.272
7 C -0.453 4.453
8 H 0.082 0.918
9 C 0.342 3.658
10 N -0.343 5.343
11 N -0.293 5.293
12 C 0.055 3.945
13 N -0.523 5.523
14 C 0.128 3.872
15 C -0.005 4.005
16 H 0.107 0.893
17 Cl -0.179 7.179
18 C -0.122 4.122
19 C -0.009 4.009
20 H 0.278 0.722
21 H 0.086 0.914
22 H 0.076 0.924
23 H 0.082 0.918
24 H 0.077 0.923
25 H 0.073 0.927
26 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.127 -7.819 -0.343 11.283
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.362 5.362
2 C -0.146 4.146
3 Si 0.742 3.258
4 H -0.186 1.186
5 H -0.198 1.198
6 H -0.198 1.198
7 C -0.493 4.493
8 H 0.100 0.900
9 C 0.099 3.901
10 N -0.189 5.189
11 N -0.134 5.134
12 C -0.210 4.210
13 N -0.225 5.225
14 C 0.003 3.997
15 C -0.049 4.049
16 H 0.125 0.875
17 Cl -0.153 7.153
18 C -0.161 4.161
19 C -0.049 4.049
20 H 0.089 0.911
21 H 0.105 0.895
22 H 0.094 0.906
23 H 0.101 0.899
24 H 0.095 0.905
25 H 0.092 0.908
26 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges 6.518 -7.420 -0.319 9.882
hybrid contribution 2.022 0.485 -0.008 2.079
sum 8.540 -6.935 -0.327 11.006
Atomic orbital electron populations
1.69963 1.07069 1.28485 1.30635 1.25782 0.94869 1.00622 0.93282
0.86113 0.80341 0.80743 0.78626 1.18564 1.19759 1.19754 1.18197
0.93732 0.87233 1.50120 0.89954 1.21479 0.89832 0.83544 0.95222
1.75861 1.08515 1.04106 1.30397 1.73872 1.23498 1.00759 1.15267
1.23604 0.85490 0.93616 1.18289 1.45788 1.04866 1.07358 1.64491
1.21555 0.82878 0.92561 1.02723 1.24401 0.81854 0.95566 1.03087
0.87519 1.98708 1.28744 1.90049 1.97769 1.21988 0.93957 0.99604
1.00529 1.19725 0.94946 0.87994 1.02194 0.91072 0.89546 0.90594
0.89910 0.90450 0.90837 0.89546
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.74 -20.42 11.96 55.56 0.66 -19.75 15
2 C 0.08 2.05 5.50 -17.29 -0.10 1.95 15
3 Si 0.92 18.63 29.56 -169.99 -5.03 13.61 15
4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 15
5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 15
6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15
7 C -0.45 -12.02 9.18 -38.12 -0.35 -12.37 15
8 H 0.08 2.00 7.81 -52.49 -0.41 1.59 15
9 C 0.34 9.50 7.55 -155.72 -1.18 8.32 15
10 N -0.34 -10.36 10.56 31.11 0.33 -10.03 15
11 N -0.29 -8.08 12.21 32.89 0.40 -7.68 15
12 C 0.05 1.25 7.76 -154.67 -1.20 0.05 15
13 N -0.52 -12.08 3.17 -113.04 -0.36 -12.44 15
14 C 0.13 2.26 6.19 -4.02 -0.02 2.24 15
15 C 0.00 -0.07 3.23 -26.48 -0.09 -0.15 15
16 H 0.11 1.47 8.12 -51.93 -0.42 1.05 15
17 Cl -0.18 -2.29 28.61 -51.86 -1.48 -3.77 15
18 C -0.12 -1.63 5.36 -26.43 -0.14 -1.77 15
19 C -0.01 -0.14 6.34 -27.56 -0.17 -0.31 15
20 H 0.28 6.93 8.29 -40.82 -0.34 6.59 15
21 H 0.09 1.49 8.14 -51.93 -0.42 1.06 15
22 H 0.08 1.29 8.14 -51.93 -0.42 0.87 15
23 H 0.08 0.88 8.14 -51.93 -0.42 0.46 15
24 H 0.08 1.07 8.12 -51.93 -0.42 0.65 15
25 H 0.07 1.07 8.14 -51.93 -0.42 0.65 15
26 H 0.09 1.29 8.14 -51.93 -0.42 0.87 15
LS Contribution 241.55 15.07 3.64 3.64
Total: -1.00 -31.94 241.55 -7.58 -39.52
By element:
Atomic # 1 Polarization: 1.46 SS G_CDS: -2.50 Total: -1.04 kcal
Atomic # 6 Polarization: 1.20 SS G_CDS: -3.25 Total: -2.05 kcal
Atomic # 7 Polarization: -50.94 SS G_CDS: 1.04 Total: -49.90 kcal
Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.61 kcal
Atomic # 17 Polarization: -2.29 SS G_CDS: -1.48 Total: -3.77 kcal
Total LS contribution 3.64 Total: 3.64 kcal
Total: -31.94 -7.58 -39.52 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261040381.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 86.614 kcal
(2) G-P(sol) polarization free energy of solvation -31.936 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.678 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.517 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.097 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds