Wall clock time and date at job start Mon Mar 30 2020 03:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30687 * 1 3 3 Si 1.86800 * 120.00185 * 2 1 4 4 H 1.48499 * 109.47064 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47167 * 299.99650 * 3 2 1 6 6 H 1.48506 * 109.47122 * 59.99534 * 3 2 1 7 7 C 1.40243 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00280 * 180.02562 * 7 2 1 9 9 C 1.40125 * 119.99964 * 0.02562 * 7 2 1 10 10 N 1.33321 * 126.77756 * 359.81456 * 9 7 2 11 11 N 1.28854 * 109.42247 * 179.84925 * 10 9 7 12 12 C 1.30741 * 110.05736 * 0.24572 * 11 10 9 13 13 N 1.35535 * 107.82800 * 359.91858 * 12 11 10 14 14 C 1.46226 * 124.98553 * 180.14257 * 13 12 11 15 15 C 1.53326 * 108.72535 * 17.00658 * 14 13 12 16 16 H 1.09003 * 109.45743 * 69.78935 * 15 14 13 17 17 Cl 1.80304 * 109.45676 * 189.76059 * 15 14 13 18 18 C 1.53150 * 109.53460 * 309.78017 * 15 14 13 19 19 C 1.50891 * 128.21355 * 179.87823 * 12 11 10 20 20 H 0.96998 * 119.99930 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.58623 * 136.77656 * 14 13 12 22 22 H 1.08996 * 109.59366 * 257.07537 * 14 13 12 23 23 H 1.09003 * 109.49276 * 189.35722 * 18 15 14 24 24 H 1.08994 * 109.49303 * 309.41371 * 18 15 14 25 25 H 1.08998 * 109.72431 * 76.29396 * 19 12 11 26 26 H 1.09000 * 109.72216 * 315.61763 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7009 1.3463 0.0006 5 1 1.8823 2.3964 -1.2125 6 1 1.8821 2.3965 1.2125 7 6 2.0081 -1.2145 0.0005 8 1 3.0880 -1.2146 0.0010 9 6 1.3074 -2.4281 0.0005 10 7 -0.0165 -2.5854 0.0035 11 7 -0.2986 -3.8426 -0.0007 12 6 0.8016 -4.5490 -0.0013 13 7 1.8479 -3.6875 0.0010 14 6 3.2566 -4.0794 -0.0017 15 6 3.3583 -5.5475 -0.4321 16 1 3.1039 -5.6347 -1.4884 17 17 5.0425 -6.1352 -0.1692 18 6 2.3875 -6.3928 0.3977 19 6 0.9464 -6.0510 -0.0032 20 1 -0.4850 0.8400 -0.0004 21 1 3.8086 -3.4537 -0.7032 22 1 3.6712 -3.9599 0.9992 23 1 2.5758 -7.4503 0.2120 24 1 2.5319 -6.1781 1.4565 25 1 0.7401 -6.4392 -1.0006 26 1 0.2516 -6.4884 0.7137 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261040381.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:27 Heat of formation + Delta-G solvation = 27.064355 kcal Electronic energy + Delta-G solvation = -13642.271257 eV Core-core repulsion = 11167.378281 eV Total energy + Delta-G solvation = -2474.892976 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.052 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.95859 -38.21782 -36.42349 -35.62130 -33.97180 -31.00371 -30.27218 -27.40069 -25.06804 -23.19795 -22.62374 -20.18468 -19.15628 -17.57500 -16.88819 -16.44938 -15.68134 -15.50409 -15.25652 -14.87788 -14.75519 -13.38758 -13.31258 -13.08311 -12.93214 -12.71310 -12.52840 -12.23695 -11.94956 -11.55679 -11.51612 -11.41760 -11.27937 -10.46347 -10.29601 -9.57757 -8.51692 -6.61376 0.93029 1.27692 1.41456 1.58954 1.71364 2.16737 2.40580 2.53509 3.25589 3.35565 3.48115 3.77014 3.93096 4.16163 4.35324 4.43739 4.59903 4.83306 4.86774 5.01256 5.10350 5.23084 5.36287 5.71215 6.23840 6.33012 6.80083 7.00435 8.45132 8.78458 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.033572 B = 0.008836 C = 0.007080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.824743 B = 3168.093137 C = 3953.778212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.030 3.970 3 Si 1.003 2.997 4 H -0.247 1.247 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.479 4.479 8 H 0.098 0.902 9 C 0.311 3.689 10 N -0.401 5.401 11 N -0.354 5.354 12 C 0.084 3.916 13 N -0.524 5.524 14 C 0.120 3.880 15 C 0.003 3.997 16 H 0.115 0.885 17 Cl -0.159 7.159 18 C -0.113 4.113 19 C -0.010 4.010 20 H 0.283 0.717 21 H 0.088 0.912 22 H 0.082 0.918 23 H 0.123 0.877 24 H 0.074 0.926 25 H 0.098 0.902 26 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.447 -9.109 -0.440 13.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.190 4.190 3 Si 0.822 3.178 4 H -0.170 1.170 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.520 4.520 8 H 0.116 0.884 9 C 0.065 3.935 10 N -0.245 5.245 11 N -0.193 5.193 12 C -0.184 4.184 13 N -0.225 5.225 14 C -0.004 4.004 15 C -0.042 4.042 16 H 0.133 0.867 17 Cl -0.132 7.132 18 C -0.151 4.151 19 C -0.050 4.050 20 H 0.093 0.907 21 H 0.106 0.894 22 H 0.100 0.900 23 H 0.141 0.859 24 H 0.093 0.907 25 H 0.116 0.884 26 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.850 -8.747 -0.415 12.450 hybrid contribution 1.356 0.694 0.029 1.524 sum 10.206 -8.054 -0.386 13.007 Atomic orbital electron populations 1.70110 1.09333 1.29860 1.32323 1.26944 0.95615 1.04608 0.91856 0.84857 0.79226 0.74969 0.78718 1.17001 1.19165 1.19230 1.18667 0.94562 0.87702 1.51024 0.88431 1.21844 0.89877 0.85562 0.96191 1.75707 1.10530 1.05761 1.32515 1.73755 1.25895 1.00609 1.19046 1.24903 0.84427 0.96404 1.12650 1.46035 1.07091 1.06121 1.63214 1.21889 0.79830 0.95332 1.03370 1.24220 0.83243 0.93106 1.03601 0.86730 1.98720 1.27230 1.89545 1.97752 1.21984 0.91433 1.01666 1.00047 1.20083 0.97559 0.83013 1.04308 0.90651 0.89351 0.90013 0.85884 0.90729 0.88396 0.87975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -45.63 11.96 21.88 0.26 -45.37 15 2 C 0.03 1.57 5.50 85.35 0.47 2.04 15 3 Si 1.00 38.44 29.56 68.60 2.03 40.47 15 4 H -0.25 -8.74 7.11 99.48 0.71 -8.04 15 5 H -0.27 -9.88 7.11 99.48 0.71 -9.18 15 6 H -0.27 -9.93 7.11 99.48 0.71 -9.23 15 7 C -0.48 -26.00 9.18 23.22 0.21 -25.79 15 8 H 0.10 4.75 7.81 -2.91 -0.02 4.72 15 9 C 0.31 17.80 7.55 133.68 1.01 18.81 15 10 N -0.40 -25.30 10.56 -55.48 -0.59 -25.89 15 11 N -0.35 -20.12 12.21 -49.87 -0.61 -20.73 15 12 C 0.08 3.81 7.76 137.96 1.07 4.88 15 13 N -0.52 -24.16 3.17 -511.54 -1.62 -25.78 15 14 C 0.12 4.02 6.19 86.54 0.54 4.55 15 15 C 0.00 0.06 3.23 30.75 0.10 0.16 15 16 H 0.11 2.74 8.12 -2.39 -0.02 2.72 15 17 Cl -0.16 -3.49 28.61 -2.72 -0.08 -3.57 15 18 C -0.11 -2.55 5.36 30.79 0.17 -2.39 15 19 C -0.01 -0.29 6.34 30.06 0.19 -0.10 15 20 H 0.28 14.72 8.29 -92.71 -0.77 13.95 15 21 H 0.09 2.92 8.14 -2.38 -0.02 2.91 15 22 H 0.08 2.65 8.14 -2.39 -0.02 2.63 15 23 H 0.12 1.91 8.14 -2.39 -0.02 1.89 15 24 H 0.07 1.78 8.12 -2.39 -0.02 1.76 15 25 H 0.10 2.49 8.14 -2.39 -0.02 2.47 15 26 H 0.10 2.75 8.14 -2.39 -0.02 2.73 15 Total: -1.00 -73.70 241.55 4.34 -69.36 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.19 Total: 9.33 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 3.75 Total: 2.17 kcal Atomic # 7 Polarization: -115.21 SS G_CDS: -2.55 Total: -117.77 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Atomic # 17 Polarization: -3.49 SS G_CDS: -0.08 Total: -3.57 kcal Total: -73.70 4.34 -69.36 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040381.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.427 kcal (2) G-P(sol) polarization free energy of solvation -73.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds