Wall clock time and date at job start Mon Mar 30 2020 03:06:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30687 * 1
3 3 Si 1.86800 * 120.00185 * 2 1
4 4 H 1.48499 * 109.47064 * 179.97438 * 3 2 1
5 5 H 1.48495 * 109.47167 * 299.99650 * 3 2 1
6 6 H 1.48506 * 109.47122 * 59.99534 * 3 2 1
7 7 C 1.40243 * 119.99923 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00280 * 180.02562 * 7 2 1
9 9 C 1.40125 * 119.99964 * 0.02562 * 7 2 1
10 10 N 1.33321 * 126.77756 * 359.81456 * 9 7 2
11 11 N 1.28854 * 109.42247 * 179.84925 * 10 9 7
12 12 C 1.30741 * 110.05736 * 0.24572 * 11 10 9
13 13 N 1.35535 * 107.82800 * 359.91858 * 12 11 10
14 14 C 1.46226 * 124.98553 * 180.14257 * 13 12 11
15 15 C 1.53326 * 108.72535 * 17.00658 * 14 13 12
16 16 H 1.09003 * 109.45743 * 69.78935 * 15 14 13
17 17 Cl 1.80304 * 109.45676 * 189.76059 * 15 14 13
18 18 C 1.53150 * 109.53460 * 309.78017 * 15 14 13
19 19 C 1.50891 * 128.21355 * 179.87823 * 12 11 10
20 20 H 0.96998 * 119.99930 * 0.02562 * 1 2 3
21 21 H 1.09005 * 109.58623 * 136.77656 * 14 13 12
22 22 H 1.08996 * 109.59366 * 257.07537 * 14 13 12
23 23 H 1.09003 * 109.49276 * 189.35722 * 18 15 14
24 24 H 1.08994 * 109.49303 * 309.41371 * 18 15 14
25 25 H 1.08998 * 109.72431 * 76.29396 * 19 12 11
26 26 H 1.09000 * 109.72216 * 315.61763 * 19 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3069 0.0000 0.0000
3 14 2.2409 1.6177 0.0000
4 1 3.7009 1.3463 0.0006
5 1 1.8823 2.3964 -1.2125
6 1 1.8821 2.3965 1.2125
7 6 2.0081 -1.2145 0.0005
8 1 3.0880 -1.2146 0.0010
9 6 1.3074 -2.4281 0.0005
10 7 -0.0165 -2.5854 0.0035
11 7 -0.2986 -3.8426 -0.0007
12 6 0.8016 -4.5490 -0.0013
13 7 1.8479 -3.6875 0.0010
14 6 3.2566 -4.0794 -0.0017
15 6 3.3583 -5.5475 -0.4321
16 1 3.1039 -5.6347 -1.4884
17 17 5.0425 -6.1352 -0.1692
18 6 2.3875 -6.3928 0.3977
19 6 0.9464 -6.0510 -0.0032
20 1 -0.4850 0.8400 -0.0004
21 1 3.8086 -3.4537 -0.7032
22 1 3.6712 -3.9599 0.9992
23 1 2.5758 -7.4503 0.2120
24 1 2.5319 -6.1781 1.4565
25 1 0.7401 -6.4392 -1.0006
26 1 0.2516 -6.4884 0.7137
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261040381.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:06:27
Heat of formation + Delta-G solvation = 27.064355 kcal
Electronic energy + Delta-G solvation = -13642.271257 eV
Core-core repulsion = 11167.378281 eV
Total energy + Delta-G solvation = -2474.892976 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 227.052 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-42.95859 -38.21782 -36.42349 -35.62130 -33.97180 -31.00371 -30.27218 -27.40069
-25.06804 -23.19795 -22.62374 -20.18468 -19.15628 -17.57500 -16.88819 -16.44938
-15.68134 -15.50409 -15.25652 -14.87788 -14.75519 -13.38758 -13.31258 -13.08311
-12.93214 -12.71310 -12.52840 -12.23695 -11.94956 -11.55679 -11.51612 -11.41760
-11.27937 -10.46347 -10.29601 -9.57757 -8.51692 -6.61376 0.93029 1.27692
1.41456 1.58954 1.71364 2.16737 2.40580 2.53509 3.25589 3.35565
3.48115 3.77014 3.93096 4.16163 4.35324 4.43739 4.59903 4.83306
4.86774 5.01256 5.10350 5.23084 5.36287 5.71215 6.23840 6.33012
6.80083 7.00435 8.45132 8.78458
Molecular weight = 227.05amu
Principal moments of inertia in cm(-1)
A = 0.033572 B = 0.008836 C = 0.007080
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 833.824743 B = 3168.093137 C = 3953.778212
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.791 5.791
2 C 0.030 3.970
3 Si 1.003 2.997
4 H -0.247 1.247
5 H -0.267 1.267
6 H -0.267 1.267
7 C -0.479 4.479
8 H 0.098 0.902
9 C 0.311 3.689
10 N -0.401 5.401
11 N -0.354 5.354
12 C 0.084 3.916
13 N -0.524 5.524
14 C 0.120 3.880
15 C 0.003 3.997
16 H 0.115 0.885
17 Cl -0.159 7.159
18 C -0.113 4.113
19 C -0.010 4.010
20 H 0.283 0.717
21 H 0.088 0.912
22 H 0.082 0.918
23 H 0.123 0.877
24 H 0.074 0.926
25 H 0.098 0.902
26 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.447 -9.109 -0.440 13.867
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.416 5.416
2 C -0.190 4.190
3 Si 0.822 3.178
4 H -0.170 1.170
5 H -0.192 1.192
6 H -0.192 1.192
7 C -0.520 4.520
8 H 0.116 0.884
9 C 0.065 3.935
10 N -0.245 5.245
11 N -0.193 5.193
12 C -0.184 4.184
13 N -0.225 5.225
14 C -0.004 4.004
15 C -0.042 4.042
16 H 0.133 0.867
17 Cl -0.132 7.132
18 C -0.151 4.151
19 C -0.050 4.050
20 H 0.093 0.907
21 H 0.106 0.894
22 H 0.100 0.900
23 H 0.141 0.859
24 H 0.093 0.907
25 H 0.116 0.884
26 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges 8.850 -8.747 -0.415 12.450
hybrid contribution 1.356 0.694 0.029 1.524
sum 10.206 -8.054 -0.386 13.007
Atomic orbital electron populations
1.70110 1.09333 1.29860 1.32323 1.26944 0.95615 1.04608 0.91856
0.84857 0.79226 0.74969 0.78718 1.17001 1.19165 1.19230 1.18667
0.94562 0.87702 1.51024 0.88431 1.21844 0.89877 0.85562 0.96191
1.75707 1.10530 1.05761 1.32515 1.73755 1.25895 1.00609 1.19046
1.24903 0.84427 0.96404 1.12650 1.46035 1.07091 1.06121 1.63214
1.21889 0.79830 0.95332 1.03370 1.24220 0.83243 0.93106 1.03601
0.86730 1.98720 1.27230 1.89545 1.97752 1.21984 0.91433 1.01666
1.00047 1.20083 0.97559 0.83013 1.04308 0.90651 0.89351 0.90013
0.85884 0.90729 0.88396 0.87975
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.79 -45.63 11.96 21.88 0.26 -45.37 15
2 C 0.03 1.57 5.50 85.35 0.47 2.04 15
3 Si 1.00 38.44 29.56 68.60 2.03 40.47 15
4 H -0.25 -8.74 7.11 99.48 0.71 -8.04 15
5 H -0.27 -9.88 7.11 99.48 0.71 -9.18 15
6 H -0.27 -9.93 7.11 99.48 0.71 -9.23 15
7 C -0.48 -26.00 9.18 23.22 0.21 -25.79 15
8 H 0.10 4.75 7.81 -2.91 -0.02 4.72 15
9 C 0.31 17.80 7.55 133.68 1.01 18.81 15
10 N -0.40 -25.30 10.56 -55.48 -0.59 -25.89 15
11 N -0.35 -20.12 12.21 -49.87 -0.61 -20.73 15
12 C 0.08 3.81 7.76 137.96 1.07 4.88 15
13 N -0.52 -24.16 3.17 -511.54 -1.62 -25.78 15
14 C 0.12 4.02 6.19 86.54 0.54 4.55 15
15 C 0.00 0.06 3.23 30.75 0.10 0.16 15
16 H 0.11 2.74 8.12 -2.39 -0.02 2.72 15
17 Cl -0.16 -3.49 28.61 -2.72 -0.08 -3.57 15
18 C -0.11 -2.55 5.36 30.79 0.17 -2.39 15
19 C -0.01 -0.29 6.34 30.06 0.19 -0.10 15
20 H 0.28 14.72 8.29 -92.71 -0.77 13.95 15
21 H 0.09 2.92 8.14 -2.38 -0.02 2.91 15
22 H 0.08 2.65 8.14 -2.39 -0.02 2.63 15
23 H 0.12 1.91 8.14 -2.39 -0.02 1.89 15
24 H 0.07 1.78 8.12 -2.39 -0.02 1.76 15
25 H 0.10 2.49 8.14 -2.39 -0.02 2.47 15
26 H 0.10 2.75 8.14 -2.39 -0.02 2.73 15
Total: -1.00 -73.70 241.55 4.34 -69.36
By element:
Atomic # 1 Polarization: 8.14 SS G_CDS: 1.19 Total: 9.33 kcal
Atomic # 6 Polarization: -1.58 SS G_CDS: 3.75 Total: 2.17 kcal
Atomic # 7 Polarization: -115.21 SS G_CDS: -2.55 Total: -117.77 kcal
Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal
Atomic # 17 Polarization: -3.49 SS G_CDS: -0.08 Total: -3.57 kcal
Total: -73.70 4.34 -69.36 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261040381.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 96.427 kcal
(2) G-P(sol) polarization free energy of solvation -73.704 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.723 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.342 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.362 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.064 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds