Wall clock time and date at job start Mon Mar 30 2020 03:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30680 * 1 3 3 Si 1.86806 * 119.99871 * 2 1 4 4 H 1.48507 * 109.46715 * 95.01411 * 3 2 1 5 5 H 1.48496 * 109.47031 * 215.01219 * 3 2 1 6 6 H 1.48500 * 109.47273 * 335.01764 * 3 2 1 7 7 C 1.40243 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99823 * 173.96841 * 7 2 1 9 9 C 1.40122 * 120.00092 * 353.96723 * 7 2 1 10 10 N 1.33321 * 126.77598 * 5.36771 * 9 7 2 11 11 N 1.28846 * 109.42183 * 179.78658 * 10 9 7 12 12 C 1.30744 * 110.05754 * 0.43268 * 11 10 9 13 13 N 1.35527 * 107.82519 * 359.79641 * 12 11 10 14 14 C 1.46232 * 124.98881 * 179.82742 * 13 12 11 15 15 C 1.53322 * 108.72504 * 343.02237 * 14 13 12 16 16 H 1.08990 * 109.46036 * 290.18388 * 15 14 13 17 17 Cl 1.80303 * 109.45983 * 170.22239 * 15 14 13 18 18 C 1.53154 * 109.53841 * 50.20695 * 15 14 13 19 19 C 1.50893 * 128.21773 * 179.83957 * 12 11 10 20 20 H 0.96999 * 120.00469 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.58729 * 102.79130 * 14 13 12 22 22 H 1.09001 * 109.59593 * 223.09432 * 14 13 12 23 23 H 1.09003 * 109.49713 * 50.54938 * 18 15 14 24 24 H 1.08997 * 109.49690 * 170.61293 * 18 15 14 25 25 H 1.08999 * 109.72391 * 44.38153 * 19 12 11 26 26 H 1.09006 * 109.71943 * 283.72032 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.5942 1.9852 1.3948 5 1 3.4813 1.4732 -0.8033 6 1 1.3892 2.6810 -0.5913 7 6 2.0080 -1.2145 -0.0005 8 1 3.0836 -1.2170 -0.0988 9 6 1.3133 -2.4247 0.1264 10 7 -0.0098 -2.5863 0.1556 11 7 -0.2858 -3.8389 0.2781 12 6 0.8177 -4.5370 0.3427 13 7 1.8597 -3.6753 0.2513 14 6 3.2705 -4.0587 0.2865 15 6 3.3809 -5.4772 0.8579 16 1 3.1313 -5.4618 1.9187 17 17 5.0668 -6.0804 0.6464 18 6 2.4110 -6.4040 0.1189 19 6 0.9699 -6.0310 0.4907 20 1 -0.4851 0.8400 0.0004 21 1 3.6800 -4.0385 -0.7234 22 1 3.8226 -3.3635 0.9189 23 1 2.5497 -6.2928 -0.9565 24 1 2.6054 -7.4374 0.4059 25 1 0.2743 -6.5395 -0.1768 26 1 0.7692 -6.3207 1.5223 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261040382.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:29 Heat of formation + Delta-G solvation = 27.057498 kcal Electronic energy + Delta-G solvation = -13642.524683 eV Core-core repulsion = 11167.631409 eV Total energy + Delta-G solvation = -2474.893273 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.052 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.96063 -38.21852 -36.42353 -35.62141 -33.97164 -31.00558 -30.27368 -27.39795 -25.06810 -23.19850 -22.62196 -20.18394 -19.15688 -17.57625 -16.88132 -16.45629 -15.67651 -15.50699 -15.25718 -14.87507 -14.75529 -13.40302 -13.31072 -13.06183 -12.95948 -12.68438 -12.52573 -12.23752 -11.99240 -11.56202 -11.51884 -11.41656 -11.24826 -10.46460 -10.29591 -9.57652 -8.52036 -6.61264 0.93010 1.29017 1.41324 1.57388 1.71772 2.16815 2.40399 2.53700 3.25338 3.34952 3.48220 3.76997 3.93106 4.16028 4.35744 4.43656 4.59783 4.83396 4.86902 5.01480 5.10220 5.23162 5.36129 5.71216 6.23658 6.32890 6.79973 7.00482 8.44816 8.78338 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.033451 B = 0.008859 C = 0.007090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.838454 B = 3159.881606 C = 3948.353270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.031 3.969 3 Si 1.003 2.997 4 H -0.261 1.261 5 H -0.249 1.249 6 H -0.271 1.271 7 C -0.481 4.481 8 H 0.098 0.902 9 C 0.312 3.688 10 N -0.401 5.401 11 N -0.354 5.354 12 C 0.084 3.916 13 N -0.524 5.524 14 C 0.119 3.881 15 C 0.003 3.997 16 H 0.115 0.885 17 Cl -0.159 7.159 18 C -0.113 4.113 19 C -0.010 4.010 20 H 0.283 0.717 21 H 0.081 0.919 22 H 0.089 0.911 23 H 0.074 0.926 24 H 0.123 0.877 25 H 0.102 0.898 26 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.487 -8.964 1.457 13.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.189 4.189 3 Si 0.822 3.178 4 H -0.185 1.185 5 H -0.173 1.173 6 H -0.195 1.195 7 C -0.521 4.521 8 H 0.116 0.884 9 C 0.066 3.934 10 N -0.246 5.246 11 N -0.193 5.193 12 C -0.184 4.184 13 N -0.224 5.224 14 C -0.004 4.004 15 C -0.042 4.042 16 H 0.133 0.867 17 Cl -0.132 7.132 18 C -0.151 4.151 19 C -0.050 4.050 20 H 0.094 0.906 21 H 0.099 0.901 22 H 0.107 0.893 23 H 0.093 0.907 24 H 0.141 0.859 25 H 0.120 0.880 26 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.883 -8.610 1.412 12.451 hybrid contribution 1.368 0.687 -0.059 1.532 sum 10.251 -7.923 1.354 13.026 Atomic orbital electron populations 1.70100 1.09354 1.29972 1.32146 1.26941 0.95589 1.04591 0.91824 0.84926 0.78598 0.74603 0.79695 1.18526 1.17275 1.19549 1.18622 0.95019 0.87895 1.50581 0.88434 1.21827 0.89778 0.85689 0.96137 1.75700 1.10693 1.05895 1.32276 1.73751 1.25788 1.00857 1.18902 1.24902 0.84489 0.96502 1.12498 1.46036 1.07096 1.06766 1.62546 1.21891 0.79764 0.95921 1.02861 1.24214 0.83199 0.93309 1.03439 0.86733 1.98720 1.27070 1.89110 1.98345 1.21985 0.91443 1.00686 1.01015 1.20084 0.97538 0.83217 1.04127 0.90628 0.90074 0.89274 0.90735 0.85878 0.87973 0.88398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -45.59 11.98 21.88 0.26 -45.33 15 2 C 0.03 1.62 5.49 85.35 0.47 2.09 15 3 Si 1.00 38.40 29.57 68.60 2.03 40.43 15 4 H -0.26 -9.58 7.11 99.48 0.71 -8.87 15 5 H -0.25 -8.89 7.11 99.48 0.71 -8.18 15 6 H -0.27 -10.03 7.11 99.48 0.71 -9.33 15 7 C -0.48 -26.10 9.17 23.22 0.21 -25.89 15 8 H 0.10 4.74 7.82 -2.91 -0.02 4.72 15 9 C 0.31 17.82 7.55 133.68 1.01 18.83 15 10 N -0.40 -25.33 10.58 -55.48 -0.59 -25.92 15 11 N -0.35 -20.11 12.21 -49.87 -0.61 -20.72 15 12 C 0.08 3.81 7.76 137.96 1.07 4.88 15 13 N -0.52 -24.15 3.17 -511.54 -1.62 -25.77 15 14 C 0.12 4.01 6.20 86.54 0.54 4.55 15 15 C 0.00 0.07 3.23 30.75 0.10 0.17 15 16 H 0.11 2.74 8.12 -2.39 -0.02 2.72 15 17 Cl -0.16 -3.49 28.61 -2.72 -0.08 -3.57 15 18 C -0.11 -2.55 5.36 30.79 0.17 -2.39 15 19 C -0.01 -0.29 6.34 30.06 0.19 -0.10 15 20 H 0.28 14.77 8.29 -92.71 -0.77 14.00 15 21 H 0.08 2.63 8.14 -2.39 -0.02 2.61 15 22 H 0.09 2.95 8.14 -2.39 -0.02 2.93 15 23 H 0.07 1.77 8.12 -2.39 -0.02 1.75 15 24 H 0.12 1.91 8.14 -2.39 -0.02 1.89 15 25 H 0.10 2.75 8.14 -2.39 -0.02 2.73 15 26 H 0.10 2.49 8.14 -2.38 -0.02 2.47 15 Total: -1.00 -73.64 241.60 4.34 -69.30 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 1.19 Total: 9.44 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 3.75 Total: 2.14 kcal Atomic # 7 Polarization: -115.19 SS G_CDS: -2.56 Total: -117.75 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Atomic # 17 Polarization: -3.49 SS G_CDS: -0.08 Total: -3.57 kcal Total: -73.64 4.34 -69.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040382.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.357 kcal (2) G-P(sol) polarization free energy of solvation -73.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds