Wall clock time and date at job start Mon Mar 30 2020 03:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30854 * 1 3 3 Si 1.86803 * 119.99829 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99921 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99778 * 3 2 1 6 6 H 1.48499 * 109.47135 * 150.00119 * 3 2 1 7 7 C 1.39875 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99748 * 179.97438 * 7 2 1 9 9 C 1.41390 * 119.99616 * 0.27905 * 7 2 1 10 10 N 1.35260 * 126.13149 * 179.71797 * 9 7 2 11 11 C 1.30216 * 107.15638 * 179.97438 * 10 9 7 12 12 N 1.35252 * 108.08097 * 0.04673 * 11 10 9 13 13 N 1.28529 * 108.48941 * 359.68520 * 12 11 10 14 14 C 1.46740 * 124.36847 * 179.90941 * 12 11 10 15 15 C 1.53194 * 108.85693 * 342.60805 * 14 12 11 16 16 C 1.53154 * 109.54157 * 50.72806 * 15 14 12 17 17 C 1.50914 * 127.51428 * 180.02562 * 11 10 9 18 18 H 1.08999 * 109.71348 * 283.92743 * 17 11 10 19 19 Cl 1.80299 * 109.71314 * 44.52605 * 17 11 10 20 20 H 0.96996 * 120.00439 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.57252 * 222.78995 * 14 12 11 22 22 H 1.09003 * 109.57061 * 102.42036 * 14 12 11 23 23 H 1.09002 * 109.45857 * 290.70783 * 15 14 12 24 24 H 1.08994 * 109.46101 * 170.74904 * 15 14 12 25 25 H 1.09001 * 109.53205 * 170.63552 * 16 15 14 26 26 H 1.09001 * 109.53100 * 50.42433 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4900 2.0464 -1.4001 5 1 1.4399 2.6527 0.7000 6 1 3.5401 1.4403 0.7000 7 6 2.0080 -1.2113 0.0005 8 1 3.0880 -1.2112 0.0001 9 6 1.3010 -2.4358 -0.0049 10 7 1.8483 -3.6727 -0.0104 11 6 0.8659 -4.5274 -0.0136 12 7 -0.2947 -3.8329 -0.0112 13 7 -0.0186 -2.5777 0.0001 14 6 -1.6275 -4.4469 -0.0154 15 6 -1.4979 -5.9084 -0.4560 16 6 -0.4125 -6.5996 0.3746 17 6 0.9583 -6.0337 -0.0195 18 1 1.2271 -6.3816 -1.0169 19 17 2.2035 -6.5713 1.1684 20 1 -0.4850 0.8400 -0.0004 21 1 -2.2739 -3.9117 -0.7110 22 1 -2.0524 -4.4041 0.9874 23 1 -1.2273 -5.9470 -1.5112 24 1 -2.4494 -6.4185 -0.3064 25 1 -0.4330 -7.6720 0.1810 26 1 -0.5921 -6.4160 1.4340 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261060616.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:55 Heat of formation + Delta-G solvation = 66.943986 kcal Electronic energy + Delta-G solvation = -13641.495283 eV Core-core repulsion = 11168.331618 eV Total energy + Delta-G solvation = -2473.163665 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.052 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.46760 -36.65486 -35.30649 -33.18263 -32.33966 -29.32679 -28.57478 -26.10614 -23.17823 -22.03337 -20.48235 -18.83248 -16.83957 -15.88411 -15.45073 -14.85403 -14.45228 -14.11986 -13.94621 -13.49490 -12.61739 -12.01408 -11.75834 -11.23567 -11.15391 -11.10253 -11.01182 -10.51739 -10.29013 -10.14348 -10.06415 -9.66020 -9.23336 -8.59334 -8.30671 -7.58205 -6.34325 -4.25720 2.31519 3.16833 3.24944 3.30825 3.43078 3.74142 4.18308 4.40701 4.59890 4.64486 4.81127 4.92718 5.30583 5.43807 5.65095 5.69051 5.71692 5.83546 5.86494 6.14251 6.70399 7.17499 7.52175 8.10281 8.32242 8.61620 8.95311 9.19202 10.31322 10.66222 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.040838 B = 0.008490 C = 0.007193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.473983 B = 3297.059260 C = 3891.898181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.915 3.085 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.434 4.434 8 H 0.086 0.914 9 C 0.318 3.682 10 N -0.524 5.524 11 C 0.145 3.855 12 N -0.332 5.332 13 N -0.335 5.335 14 C 0.133 3.867 15 C -0.131 4.131 16 C -0.126 4.126 17 C 0.099 3.901 18 H 0.112 0.888 19 Cl -0.162 7.162 20 H 0.269 0.731 21 H 0.088 0.912 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.389 -10.970 -0.574 11.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.476 4.476 8 H 0.104 0.896 9 C 0.058 3.942 10 N -0.254 5.254 11 C -0.130 4.130 12 N -0.130 5.130 13 N -0.171 5.171 14 C 0.010 3.990 15 C -0.170 4.170 16 C -0.165 4.165 17 C 0.053 3.947 18 H 0.130 0.870 19 Cl -0.136 7.136 20 H 0.080 0.920 21 H 0.106 0.894 22 H 0.094 0.906 23 H 0.094 0.906 24 H 0.111 0.889 25 H 0.104 0.896 26 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.624 -10.457 -0.473 11.443 hybrid contribution 0.265 0.589 0.057 0.649 sum -4.358 -9.868 -0.416 10.795 Atomic orbital electron populations 1.69954 1.06854 1.27544 1.36916 1.25712 0.94836 1.00476 0.93577 0.86220 0.80139 0.80895 0.78761 1.19846 1.20625 1.18805 1.18221 0.93740 0.86392 1.49283 0.89627 1.20992 0.85579 0.90862 0.96721 1.71156 1.29110 1.00579 1.24565 1.23774 0.85013 0.94549 1.09661 1.47234 1.05508 1.05052 1.55173 1.75366 1.17458 0.92590 1.31716 1.21550 0.82577 0.92221 1.02673 1.21912 0.99775 0.94430 1.00868 1.22053 0.91994 1.00633 1.01791 1.22105 0.89763 0.88376 0.94491 0.87028 1.98713 1.60221 1.90742 1.63885 0.92015 0.89385 0.90636 0.90594 0.88892 0.89575 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -22.52 11.94 55.54 0.66 -21.86 15 2 C 0.07 2.03 5.49 -17.36 -0.10 1.93 15 3 Si 0.91 20.51 29.56 -169.99 -5.02 15.49 15 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 6 H -0.26 -5.83 7.11 56.52 0.40 -5.43 15 7 C -0.43 -12.92 9.50 -37.77 -0.36 -13.27 15 8 H 0.09 2.47 7.84 -52.49 -0.41 2.06 15 9 C 0.32 9.51 7.64 -157.41 -1.20 8.30 15 10 N -0.52 -14.36 11.37 -9.84 -0.11 -14.47 15 11 C 0.15 3.30 7.10 -155.36 -1.10 2.20 15 12 N -0.33 -7.70 3.75 -57.94 -0.22 -7.91 15 13 N -0.34 -9.58 10.37 30.93 0.32 -9.26 15 14 C 0.13 2.16 7.20 -3.81 -0.03 2.13 15 15 C -0.13 -1.51 5.93 -26.55 -0.16 -1.67 15 16 C -0.13 -1.54 5.40 -26.42 -0.14 -1.69 15 17 C 0.10 1.64 3.61 -27.55 -0.10 1.54 15 18 H 0.11 1.64 8.14 -51.93 -0.42 1.22 15 19 Cl -0.16 -2.78 28.58 -51.86 -1.48 -4.26 15 20 H 0.27 7.08 8.30 -40.82 -0.34 6.74 15 21 H 0.09 1.39 8.14 -51.93 -0.42 0.96 15 22 H 0.08 1.14 8.14 -51.93 -0.42 0.72 15 23 H 0.08 0.87 8.11 -51.93 -0.42 0.44 15 24 H 0.09 0.74 8.14 -51.93 -0.42 0.32 15 25 H 0.09 0.78 8.14 -51.93 -0.42 0.36 15 26 H 0.08 1.05 8.12 -51.93 -0.42 0.63 15 LS Contribution 241.85 15.07 3.64 3.64 Total: -1.00 -34.55 241.85 -7.90 -42.45 By element: Atomic # 1 Polarization: -0.79 SS G_CDS: -2.50 Total: -3.29 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -3.19 Total: -0.53 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 0.66 Total: -53.50 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 17 Polarization: -2.78 SS G_CDS: -1.48 Total: -4.26 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -34.55 -7.90 -42.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261060616.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.392 kcal (2) G-P(sol) polarization free energy of solvation -34.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds