Wall clock time and date at job start Mon Mar 30 2020 03:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30854 * 1 3 3 Si 1.86803 * 119.99829 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99921 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99778 * 3 2 1 6 6 H 1.48499 * 109.47135 * 150.00119 * 3 2 1 7 7 C 1.39875 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99748 * 179.97438 * 7 2 1 9 9 C 1.41390 * 119.99616 * 0.27905 * 7 2 1 10 10 N 1.35260 * 126.13149 * 179.71797 * 9 7 2 11 11 C 1.30216 * 107.15638 * 179.97438 * 10 9 7 12 12 N 1.35252 * 108.08097 * 0.04673 * 11 10 9 13 13 N 1.28529 * 108.48941 * 359.68520 * 12 11 10 14 14 C 1.46740 * 124.36847 * 179.90941 * 12 11 10 15 15 C 1.53194 * 108.85693 * 342.60805 * 14 12 11 16 16 C 1.53154 * 109.54157 * 50.72806 * 15 14 12 17 17 C 1.50914 * 127.51428 * 180.02562 * 11 10 9 18 18 H 1.08999 * 109.71348 * 283.92743 * 17 11 10 19 19 Cl 1.80299 * 109.71314 * 44.52605 * 17 11 10 20 20 H 0.96996 * 120.00439 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.57252 * 222.78995 * 14 12 11 22 22 H 1.09003 * 109.57061 * 102.42036 * 14 12 11 23 23 H 1.09002 * 109.45857 * 290.70783 * 15 14 12 24 24 H 1.08994 * 109.46101 * 170.74904 * 15 14 12 25 25 H 1.09001 * 109.53205 * 170.63552 * 16 15 14 26 26 H 1.09001 * 109.53100 * 50.42433 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4900 2.0464 -1.4001 5 1 1.4399 2.6527 0.7000 6 1 3.5401 1.4403 0.7000 7 6 2.0080 -1.2113 0.0005 8 1 3.0880 -1.2112 0.0001 9 6 1.3010 -2.4358 -0.0049 10 7 1.8483 -3.6727 -0.0104 11 6 0.8659 -4.5274 -0.0136 12 7 -0.2947 -3.8329 -0.0112 13 7 -0.0186 -2.5777 0.0001 14 6 -1.6275 -4.4469 -0.0154 15 6 -1.4979 -5.9084 -0.4560 16 6 -0.4125 -6.5996 0.3746 17 6 0.9583 -6.0337 -0.0195 18 1 1.2271 -6.3816 -1.0169 19 17 2.2035 -6.5713 1.1684 20 1 -0.4850 0.8400 -0.0004 21 1 -2.2739 -3.9117 -0.7110 22 1 -2.0524 -4.4041 0.9874 23 1 -1.2273 -5.9470 -1.5112 24 1 -2.4494 -6.4185 -0.3064 25 1 -0.4330 -7.6720 0.1810 26 1 -0.5921 -6.4160 1.4340 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261060616.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:55 Heat of formation + Delta-G solvation = 43.357778 kcal Electronic energy + Delta-G solvation = -13642.518058 eV Core-core repulsion = 11168.331618 eV Total energy + Delta-G solvation = -2474.186440 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.33100 -37.98517 -36.67763 -35.19335 -34.04400 -31.08287 -30.13062 -28.02111 -24.64921 -23.41644 -22.47547 -20.33764 -18.79569 -17.56260 -17.04748 -16.60396 -15.83687 -15.59863 -15.33078 -14.97854 -14.29588 -13.41463 -13.05616 -12.93446 -12.82109 -12.70386 -12.21610 -12.14277 -11.92224 -11.87176 -11.46140 -11.29217 -11.15987 -10.50783 -10.34496 -9.58123 -8.41156 -6.42570 0.90198 1.39117 1.41225 1.57005 1.72296 2.20266 2.30916 2.37852 3.24032 3.47952 3.53667 3.64980 3.85364 4.14576 4.31513 4.49454 4.68642 4.86257 4.92860 4.94105 5.17130 5.17845 5.44422 6.21827 6.34799 6.55132 6.88400 7.07644 8.30973 8.61575 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.040838 B = 0.008490 C = 0.007193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.473983 B = 3297.059260 C = 3891.898181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.028 3.972 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.478 4.478 8 H 0.077 0.923 9 C 0.282 3.718 10 N -0.569 5.569 11 C 0.155 3.845 12 N -0.337 5.337 13 N -0.371 5.371 14 C 0.114 3.886 15 C -0.117 4.117 16 C -0.119 4.119 17 C 0.097 3.903 18 H 0.135 0.865 19 Cl -0.168 7.168 20 H 0.277 0.723 21 H 0.089 0.911 22 H 0.086 0.914 23 H 0.081 0.919 24 H 0.144 0.856 25 H 0.132 0.868 26 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.390 -12.389 -0.813 13.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.188 4.188 3 Si 0.817 3.183 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.519 4.519 8 H 0.095 0.905 9 C 0.021 3.979 10 N -0.299 5.299 11 C -0.121 4.121 12 N -0.133 5.133 13 N -0.207 5.207 14 C -0.007 4.007 15 C -0.155 4.155 16 C -0.157 4.157 17 C 0.051 3.949 18 H 0.152 0.848 19 Cl -0.142 7.142 20 H 0.087 0.913 21 H 0.107 0.893 22 H 0.104 0.896 23 H 0.099 0.901 24 H 0.162 0.838 25 H 0.151 0.849 26 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.666 -11.914 -0.712 13.212 hybrid contribution 0.496 0.882 0.131 1.020 sum -5.171 -11.031 -0.581 12.197 Atomic orbital electron populations 1.70052 1.08510 1.28994 1.37259 1.26691 0.95807 1.03993 0.92275 0.85006 0.78548 0.75477 0.79283 1.18715 1.19147 1.18497 1.18539 0.93711 0.88025 1.51654 0.90514 1.21351 0.86557 0.92013 0.97979 1.71088 1.31301 1.00564 1.26948 1.24755 0.84008 0.97024 1.06264 1.47653 1.08027 1.03846 1.53822 1.75177 1.17193 0.95840 1.32535 1.22189 0.79594 0.95180 1.03699 1.21979 1.02025 0.90786 1.00737 1.22146 0.88926 1.03053 1.01539 1.22628 0.92305 0.84187 0.95811 0.84763 1.98715 1.60936 1.90353 1.64196 0.91330 0.89298 0.89610 0.90055 0.83842 0.84936 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.32 11.94 21.81 0.26 -48.06 15 2 C 0.03 1.58 5.49 85.23 0.47 2.05 15 3 Si 1.00 42.91 29.56 68.60 2.03 44.94 15 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 15 5 H -0.27 -10.78 7.11 99.48 0.71 -10.08 15 6 H -0.26 -10.98 7.11 99.48 0.71 -10.27 15 7 C -0.48 -29.72 9.50 23.44 0.22 -29.50 15 8 H 0.08 4.67 7.84 -2.91 -0.02 4.65 15 9 C 0.28 17.60 7.64 134.76 1.03 18.62 15 10 N -0.57 -32.11 11.37 -185.03 -2.10 -34.21 15 11 C 0.16 7.04 7.10 138.21 0.98 8.03 15 12 N -0.34 -15.64 3.75 -337.22 -1.26 -16.90 15 13 N -0.37 -21.87 10.37 -56.05 -0.58 -22.45 15 14 C 0.11 3.50 7.20 86.40 0.62 4.12 15 15 C -0.12 -2.17 5.93 30.71 0.18 -1.99 15 16 C -0.12 -2.39 5.40 30.80 0.17 -2.22 15 17 C 0.10 2.97 3.61 30.07 0.11 3.08 15 18 H 0.13 3.54 8.14 -2.39 -0.02 3.52 15 19 Cl -0.17 -5.53 28.58 -2.72 -0.08 -5.61 15 20 H 0.28 14.79 8.30 -92.71 -0.77 14.02 15 21 H 0.09 2.70 8.14 -2.39 -0.02 2.68 15 22 H 0.09 2.45 8.14 -2.39 -0.02 2.43 15 23 H 0.08 1.49 8.11 -2.39 -0.02 1.47 15 24 H 0.14 1.36 8.14 -2.39 -0.02 1.34 15 25 H 0.13 1.57 8.14 -2.39 -0.02 1.55 15 26 H 0.08 1.68 8.12 -2.39 -0.02 1.66 15 Total: -1.00 -80.42 241.85 3.23 -77.19 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: 1.19 Total: 2.92 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 3.78 Total: 2.19 kcal Atomic # 7 Polarization: -117.94 SS G_CDS: -3.69 Total: -121.63 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 17 Polarization: -5.53 SS G_CDS: -0.08 Total: -5.61 kcal Total: -80.42 3.23 -77.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261060616.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.546 kcal (2) G-P(sol) polarization free energy of solvation -80.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds