Wall clock time and date at job start Mon Mar 30 2020 03:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00330 * 2 1 4 4 H 1.48501 * 109.47242 * 270.00520 * 3 2 1 5 5 H 1.48502 * 109.46718 * 30.00275 * 3 2 1 6 6 H 1.48496 * 109.47404 * 150.00209 * 3 2 1 7 7 C 1.37880 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00216 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99847 * 179.97438 * 7 2 1 10 10 H 1.09003 * 109.45086 * 60.05362 * 9 7 2 11 11 C 1.53131 * 109.44703 * 179.97438 * 9 7 2 12 12 C 1.53473 * 109.35351 * 189.64252 * 11 9 7 13 13 C 1.50791 * 108.10168 * 311.20553 * 12 11 9 14 14 N 1.29748 * 128.68442 * 195.90808 * 13 12 11 15 15 N 1.28880 * 109.66617 * 179.85056 * 14 13 12 16 16 C 1.30970 * 109.91028 * 0.02562 * 15 14 13 17 17 Cl 1.73605 * 126.52779 * 180.02562 * 16 15 14 18 18 N 1.35245 * 106.95159 * 0.04779 * 16 15 14 19 19 C 1.46214 * 129.05665 * 179.63256 * 18 16 15 20 20 H 0.96998 * 119.99265 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.49061 * 69.68050 * 11 9 7 22 22 H 1.08993 * 109.51115 * 309.62246 * 11 9 7 23 23 H 1.08994 * 109.73576 * 191.54747 * 12 11 9 24 24 H 1.09003 * 109.73159 * 70.85115 * 12 11 9 25 25 H 1.09005 * 109.60179 * 316.84466 * 19 18 16 26 26 H 1.08999 * 109.60047 * 77.32269 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8748 -0.6812 0.8895 11 6 4.0213 -2.6381 -0.0010 12 6 5.5369 -2.6423 0.2410 13 6 6.1637 -1.6410 -0.6961 14 7 7.4105 -1.5151 -1.0326 15 7 7.5394 -0.5369 -1.8617 16 6 6.3715 0.0092 -2.0923 17 17 6.0489 1.3551 -3.1402 18 7 5.4646 -0.6747 -1.3582 19 6 4.0215 -0.4662 -1.2494 20 1 -0.4849 0.8401 0.0004 21 1 3.8056 -3.1000 -0.9644 22 1 3.5250 -3.1993 0.7907 23 1 5.9387 -3.6355 0.0409 24 1 5.7455 -2.3611 1.2732 25 1 3.8116 0.6000 -1.1626 26 1 3.5263 -0.8679 -2.1334 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261065931.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:34 Heat of formation + Delta-G solvation = 50.619400 kcal Electronic energy + Delta-G solvation = -13846.721357 eV Core-core repulsion = 11372.849804 eV Total energy + Delta-G solvation = -2473.871553 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.40597 -38.68379 -38.33823 -34.96378 -34.50110 -32.27086 -30.24268 -27.24527 -25.21575 -23.47127 -23.25089 -20.49154 -19.12818 -18.62145 -17.70428 -16.75578 -16.48884 -15.73147 -15.31561 -15.23413 -14.59746 -13.99154 -13.68456 -13.32853 -13.09906 -12.92250 -12.81658 -12.53456 -12.12675 -11.76319 -11.69516 -11.45834 -11.42741 -11.10251 -10.85025 -10.19742 -8.40604 -6.46579 -0.07117 0.47178 1.17504 1.27236 1.30434 1.48572 1.58211 2.17795 2.90749 3.17685 3.56220 3.68276 3.84014 4.10322 4.28858 4.35096 4.54454 4.70282 4.72155 4.91062 5.04234 5.29624 5.35760 5.44785 5.62077 6.19747 6.64581 7.18821 7.32803 8.75127 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.027507 B = 0.012509 C = 0.009199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.680192 B = 2237.872319 C = 3043.155941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.031 3.969 3 Si 0.910 3.090 4 H -0.258 1.258 5 H -0.288 1.288 6 H -0.254 1.254 7 C -0.512 4.512 8 H 0.059 0.941 9 C 0.004 3.996 10 H 0.039 0.961 11 C -0.101 4.101 12 C -0.031 4.031 13 C 0.207 3.793 14 N -0.311 5.311 15 N -0.296 5.296 16 C 0.196 3.804 17 Cl 0.062 6.938 18 N -0.463 5.463 19 C 0.095 3.905 20 H 0.270 0.730 21 H 0.065 0.935 22 H 0.096 0.904 23 H 0.129 0.871 24 H 0.114 0.886 25 H 0.069 0.931 26 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.947 -0.566 -2.124 9.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.170 4.170 3 Si 0.736 3.264 4 H -0.183 1.183 5 H -0.215 1.215 6 H -0.179 1.179 7 C -0.550 4.550 8 H 0.077 0.923 9 C -0.015 4.015 10 H 0.057 0.943 11 C -0.139 4.139 12 C -0.070 4.070 13 C -0.061 4.061 14 N -0.151 5.151 15 N -0.140 5.140 16 C -0.096 4.096 17 Cl 0.090 6.910 18 N -0.156 5.156 19 C -0.026 4.026 20 H 0.079 0.921 21 H 0.084 0.916 22 H 0.114 0.886 23 H 0.147 0.853 24 H 0.132 0.868 25 H 0.087 0.913 26 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.197 -0.550 -2.319 10.472 hybrid contribution -1.566 1.674 -0.319 2.315 sum 8.631 1.125 -2.638 9.094 Atomic orbital electron populations 1.69969 1.07793 1.28254 1.50928 1.25694 0.95221 1.01885 0.94151 0.86435 0.79482 0.80952 0.79518 1.18338 1.21501 1.17898 1.21069 0.89382 0.93843 1.50709 0.92294 1.19484 0.95289 0.95195 0.91541 0.94316 1.21589 0.92766 0.95980 1.03606 1.20633 0.94257 0.95806 0.96281 1.25600 0.88268 0.93764 0.98424 1.74004 1.15440 1.13414 1.12267 1.74493 1.18546 1.06729 1.14245 1.25118 0.87753 0.97053 0.99708 1.98415 1.94839 1.37143 1.60647 1.46715 1.10929 1.24790 1.33122 1.23114 0.72985 1.02014 1.04438 0.92073 0.91617 0.88560 0.85332 0.86818 0.91312 0.88252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.44 13.96 21.45 0.30 -52.14 15 2 C 0.03 1.58 5.45 84.66 0.46 2.04 15 3 Si 0.91 39.44 24.27 68.60 1.66 41.11 15 4 H -0.26 -10.53 6.96 99.48 0.69 -9.84 15 5 H -0.29 -12.68 7.11 99.48 0.71 -11.98 15 6 H -0.25 -10.53 6.51 99.48 0.65 -9.89 15 7 C -0.51 -24.82 9.11 25.60 0.23 -24.59 15 8 H 0.06 3.13 7.99 -2.91 -0.02 3.11 15 9 C 0.00 0.17 1.70 -11.42 -0.02 0.15 15 10 H 0.04 1.55 7.18 -2.39 -0.02 1.53 15 11 C -0.10 -3.07 5.19 30.80 0.16 -2.91 15 12 C -0.03 -0.79 6.34 30.04 0.19 -0.60 15 13 C 0.21 6.96 7.77 137.93 1.07 8.04 15 14 N -0.31 -11.49 12.19 -49.92 -0.61 -12.09 15 15 N -0.30 -11.30 12.23 -52.51 -0.64 -11.94 15 16 C 0.20 7.03 8.72 180.06 1.57 8.60 15 17 Cl 0.06 1.87 29.22 -2.72 -0.08 1.79 15 18 N -0.46 -16.67 3.15 -507.49 -1.60 -18.27 15 19 C 0.10 3.59 5.52 86.51 0.48 4.06 15 20 H 0.27 14.35 8.31 -92.71 -0.77 13.58 15 21 H 0.07 1.98 8.12 -2.38 -0.02 1.96 15 22 H 0.10 2.73 8.11 -2.39 -0.02 2.71 15 23 H 0.13 2.55 8.14 -2.39 -0.02 2.53 15 24 H 0.11 2.56 8.14 -2.39 -0.02 2.54 15 25 H 0.07 2.70 3.61 -2.38 -0.01 2.70 15 26 H 0.10 3.67 8.12 -2.39 -0.02 3.65 15 Total: -1.00 -58.47 233.10 4.31 -54.15 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: 1.13 Total: 2.60 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 4.14 Total: -5.21 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -2.55 Total: -94.44 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 1.66 Total: 41.11 kcal Atomic # 17 Polarization: 1.87 SS G_CDS: -0.08 Total: 1.79 kcal Total: -58.47 4.31 -54.15 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261065931.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.773 kcal (2) G-P(sol) polarization free energy of solvation -58.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds