Wall clock time and date at job start Mon Mar 30 2020 02:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00049 * 2 1 4 4 H 1.48506 * 109.47050 * 270.00399 * 3 2 1 5 5 H 1.48500 * 109.47345 * 30.00065 * 3 2 1 6 6 H 1.48498 * 109.47548 * 150.00543 * 3 2 1 7 7 C 1.37886 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99853 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99789 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 2 11 11 C 1.38467 * 119.99764 * 179.72353 * 10 9 7 12 12 N 1.29446 * 125.18602 * 179.97438 * 11 10 9 13 13 C 1.33632 * 116.89303 * 179.84531 * 12 11 10 14 14 C 1.47165 * 122.47447 * 180.23426 * 13 12 11 15 15 N 1.34772 * 120.00426 * 0.23212 * 14 13 12 16 16 O 1.21653 * 119.99587 * 180.22854 * 14 13 12 17 17 C 1.35050 * 115.04332 * 0.45109 * 13 12 11 18 18 S 1.76054 * 125.18857 * 0.30665 * 11 10 9 19 19 H 0.97000 * 119.99789 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47210 * 60.00161 * 9 7 2 21 21 H 1.08994 * 109.47121 * 300.00131 * 9 7 2 22 22 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 23 23 H 0.97008 * 119.99703 * 359.97438 * 15 14 13 24 24 H 0.96993 * 120.00447 * 180.02562 * 15 14 13 25 25 H 1.08002 * 125.86919 * 179.80366 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 5.3612 -2.8283 -0.0073 12 7 5.9012 -4.0047 -0.0073 13 6 7.2365 -4.0568 -0.0171 14 6 7.9776 -5.3282 -0.0234 15 7 7.3087 -6.4982 -0.0240 16 8 9.1941 -5.3231 -0.0281 17 6 7.8555 -2.8565 -0.0162 18 16 6.6216 -1.5991 -0.0080 19 1 -0.4850 0.8401 0.0004 20 1 3.8752 -0.6804 0.8889 21 1 3.8745 -0.6800 -0.8911 22 1 3.3695 -3.3126 -0.0010 23 1 6.3386 -6.5023 -0.0200 24 1 7.7972 -7.3362 -0.0278 25 1 8.9234 -2.6952 -0.0201 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306175195.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:39 Heat of formation + Delta-G solvation = 2.083631 kcal Electronic energy + Delta-G solvation = -12776.784571 eV Core-core repulsion = 10302.852056 eV Total energy + Delta-G solvation = -2473.932515 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.047 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.94825 -38.17506 -35.57147 -33.54630 -32.71742 -29.84777 -27.50446 -25.01915 -22.44634 -21.79377 -19.54690 -18.26485 -17.32582 -17.24512 -15.91426 -15.56287 -15.15518 -14.88648 -14.12915 -14.05787 -13.82302 -12.83937 -12.78897 -12.57931 -11.58373 -11.18001 -11.05068 -10.28424 -10.16331 -9.98515 -9.74171 -9.67814 -9.45990 -9.03271 -8.84486 -7.32931 -6.39031 -4.44330 0.99269 1.37401 1.92464 2.36683 3.10500 3.18078 3.19439 3.44449 3.62426 3.79870 4.13845 4.80036 4.94076 5.47849 5.61686 6.02745 6.30086 6.63099 6.74101 7.03873 7.08723 7.35384 7.81210 8.13227 8.18182 8.32931 8.60279 9.16802 10.72673 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.057009 B = 0.006210 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.035941 B = 4507.662650 C = 4983.544151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.081 3.919 3 Si 0.874 3.126 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.084 0.916 9 C 0.218 3.782 10 N -0.656 5.656 11 C 0.365 3.635 12 N -0.561 5.561 13 C 0.055 3.945 14 C 0.603 3.397 15 N -0.838 5.838 16 O -0.547 6.547 17 C -0.235 4.235 18 S 0.068 5.932 19 H 0.271 0.729 20 H 0.029 0.971 21 H 0.024 0.976 22 H 0.414 0.586 23 H 0.412 0.588 24 H 0.401 0.599 25 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.159 -5.481 -0.012 12.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.124 4.124 3 Si 0.700 3.300 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.585 4.585 8 H 0.102 0.898 9 C 0.096 3.904 10 N -0.292 5.292 11 C -0.010 4.010 12 N -0.291 5.291 13 C -0.077 4.077 14 C 0.385 3.615 15 N -0.401 5.401 16 O -0.425 6.425 17 C -0.380 4.380 18 S 0.316 5.684 19 H 0.081 0.919 20 H 0.046 0.954 21 H 0.042 0.958 22 H 0.252 0.748 23 H 0.242 0.758 24 H 0.231 0.769 25 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 11.279 -4.289 0.000 12.067 hybrid contribution 0.141 -0.428 -0.024 0.452 sum 11.420 -4.718 -0.024 12.356 Atomic orbital electron populations 1.69855 1.06213 1.27729 1.48229 1.24776 0.94838 0.99081 0.93682 0.86870 0.80535 0.83399 0.79218 1.19537 1.20485 1.18570 1.20880 0.87567 0.95638 1.54399 0.89761 1.19828 0.97003 0.76879 0.96667 1.44693 0.98826 1.11151 1.74528 1.24323 0.91521 0.89882 0.95309 1.66655 1.09053 1.22712 1.30719 1.19666 0.88201 0.93866 1.06015 1.17225 0.86094 0.83113 0.75039 1.43629 1.12185 1.07532 1.76736 1.90828 1.13039 1.87557 1.51067 1.26495 1.03796 0.93609 1.14137 1.85181 0.97321 1.10785 1.75150 0.91917 0.95355 0.95828 0.74763 0.75752 0.76858 0.80253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.91 13.96 55.43 0.77 -24.13 15 2 C 0.08 2.14 5.47 -17.82 -0.10 2.05 15 3 Si 0.87 19.39 27.47 -169.99 -4.67 14.72 15 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 6 H -0.26 -5.51 6.54 56.52 0.37 -5.14 15 7 C -0.55 -13.92 9.83 -34.44 -0.34 -14.26 15 8 H 0.08 2.29 7.84 -52.49 -0.41 1.87 15 9 C 0.22 4.69 4.42 -5.19 -0.02 4.67 15 10 N -0.66 -12.43 5.70 -62.19 -0.35 -12.78 15 11 C 0.36 6.47 8.42 -88.02 -0.74 5.73 15 12 N -0.56 -9.46 10.02 -10.59 -0.11 -9.56 15 13 C 0.06 0.89 6.67 -84.59 -0.56 0.33 15 14 C 0.60 9.09 8.06 -12.64 -0.10 8.99 15 15 N -0.84 -9.33 8.87 30.37 0.27 -9.06 15 16 O -0.55 -9.53 17.50 5.23 0.09 -9.44 15 17 C -0.24 -3.59 10.83 29.60 0.32 -3.27 15 18 S 0.07 1.09 22.62 -107.50 -2.43 -1.34 15 19 H 0.27 7.11 8.31 -40.82 -0.34 6.77 15 20 H 0.03 0.62 7.20 -51.93 -0.37 0.24 15 21 H 0.02 0.51 7.57 -51.93 -0.39 0.12 15 22 H 0.41 7.52 8.44 -40.82 -0.34 7.18 15 23 H 0.41 4.26 8.31 -40.82 -0.34 3.93 15 24 H 0.40 3.46 8.93 -40.82 -0.36 3.09 15 25 H 0.18 2.42 8.01 -52.49 -0.42 2.00 15 LS Contribution 245.20 15.07 3.70 3.70 Total: -1.00 -28.78 245.20 -6.09 -34.87 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -1.81 Total: 8.80 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -1.55 Total: 4.23 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.58 Total: -55.53 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.67 Total: 14.72 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.43 Total: -1.34 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -28.78 -6.09 -34.87 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306175195.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.956 kcal (2) G-P(sol) polarization free energy of solvation -28.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds