Wall clock time and date at job start Mon Mar 30 2020 02:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00049 * 2 1 4 4 H 1.48506 * 109.47050 * 270.00399 * 3 2 1 5 5 H 1.48500 * 109.47345 * 30.00065 * 3 2 1 6 6 H 1.48498 * 109.47548 * 150.00543 * 3 2 1 7 7 C 1.37886 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99853 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99789 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 2 11 11 C 1.38467 * 119.99764 * 179.72353 * 10 9 7 12 12 N 1.29446 * 125.18602 * 179.97438 * 11 10 9 13 13 C 1.33632 * 116.89303 * 179.84531 * 12 11 10 14 14 C 1.47165 * 122.47447 * 180.23426 * 13 12 11 15 15 N 1.34772 * 120.00426 * 0.23212 * 14 13 12 16 16 O 1.21653 * 119.99587 * 180.22854 * 14 13 12 17 17 C 1.35050 * 115.04332 * 0.45109 * 13 12 11 18 18 S 1.76054 * 125.18857 * 0.30665 * 11 10 9 19 19 H 0.97000 * 119.99789 * 359.97438 * 1 2 3 20 20 H 1.09004 * 109.47210 * 60.00161 * 9 7 2 21 21 H 1.08994 * 109.47121 * 300.00131 * 9 7 2 22 22 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 23 23 H 0.97008 * 119.99703 * 359.97438 * 15 14 13 24 24 H 0.96993 * 120.00447 * 180.02562 * 15 14 13 25 25 H 1.08002 * 125.86919 * 179.80366 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 5.3612 -2.8283 -0.0073 12 7 5.9012 -4.0047 -0.0073 13 6 7.2365 -4.0568 -0.0171 14 6 7.9776 -5.3282 -0.0234 15 7 7.3087 -6.4982 -0.0240 16 8 9.1941 -5.3231 -0.0281 17 6 7.8555 -2.8565 -0.0162 18 16 6.6216 -1.5991 -0.0080 19 1 -0.4850 0.8401 0.0004 20 1 3.8752 -0.6804 0.8889 21 1 3.8745 -0.6800 -0.8911 22 1 3.3695 -3.3126 -0.0010 23 1 6.3386 -6.5023 -0.0200 24 1 7.7972 -7.3362 -0.0278 25 1 8.9234 -2.6952 -0.0201 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306175195.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:38 Heat of formation + Delta-G solvation = -20.940892 kcal Electronic energy + Delta-G solvation = -12777.782989 eV Core-core repulsion = 10302.852056 eV Total energy + Delta-G solvation = -2474.930933 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.047 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.17751 -39.45119 -37.10049 -34.69859 -34.53830 -31.32255 -29.14565 -26.28974 -24.18448 -23.13995 -20.81759 -19.55305 -19.07719 -18.32869 -17.37046 -16.89192 -16.54675 -16.43920 -15.51144 -15.46731 -15.23859 -14.51513 -14.28544 -14.05455 -13.01395 -12.85295 -12.74502 -11.93134 -11.72973 -11.43011 -11.40930 -10.86539 -10.76941 -10.72313 -10.25038 -8.70697 -8.39068 -6.49210 -0.26736 0.06901 0.65937 1.08753 1.38785 1.39882 1.49313 2.05786 2.29445 2.39011 2.69288 2.96288 3.56764 4.29867 4.39945 4.50574 4.87601 4.91625 5.21133 5.54189 5.80565 6.08304 6.30470 6.45461 6.61224 6.82012 7.16677 7.24766 8.76014 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.057009 B = 0.006210 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.035941 B = 4507.662650 C = 4983.544151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.024 3.976 3 Si 0.938 3.062 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.239 1.239 7 C -0.552 4.552 8 H 0.052 0.948 9 C 0.232 3.768 10 N -0.666 5.666 11 C 0.342 3.658 12 N -0.556 5.556 13 C 0.035 3.965 14 C 0.601 3.399 15 N -0.817 5.817 16 O -0.574 6.574 17 C -0.223 4.223 18 S 0.096 5.904 19 H 0.273 0.727 20 H 0.033 0.967 21 H 0.031 0.969 22 H 0.413 0.587 23 H 0.418 0.582 24 H 0.415 0.585 25 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.139 -4.996 -0.012 14.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.162 1.162 7 C -0.589 4.589 8 H 0.070 0.930 9 C 0.109 3.891 10 N -0.303 5.303 11 C -0.032 4.032 12 N -0.286 5.286 13 C -0.097 4.097 14 C 0.383 3.617 15 N -0.380 5.380 16 O -0.455 6.455 17 C -0.367 4.367 18 S 0.344 5.656 19 H 0.082 0.918 20 H 0.051 0.949 21 H 0.049 0.951 22 H 0.251 0.749 23 H 0.249 0.751 24 H 0.248 0.752 25 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 13.286 -3.865 0.001 13.837 hybrid contribution -0.437 -0.705 -0.026 0.829 sum 12.850 -4.570 -0.025 13.638 Atomic orbital electron populations 1.69997 1.08186 1.28832 1.50220 1.25701 0.95579 1.03097 0.93288 0.85855 0.79959 0.78399 0.79816 1.18608 1.20525 1.16195 1.21140 0.89888 0.94492 1.53422 0.93028 1.19503 0.94179 0.78428 0.97001 1.44361 0.99589 1.10071 1.76237 1.24396 0.91259 0.91018 0.96562 1.66613 1.09563 1.22795 1.29618 1.19908 0.87942 0.94862 1.07038 1.17158 0.85712 0.83630 0.75153 1.43476 1.12516 1.07214 1.74804 1.90818 1.13955 1.87884 1.52821 1.26831 1.04695 0.93229 1.11993 1.85083 0.96331 1.09987 1.74247 0.91802 0.94915 0.95096 0.74854 0.75056 0.75189 0.78379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.71 13.96 21.45 0.30 -53.41 15 2 C 0.02 1.25 5.47 84.66 0.46 1.71 15 3 Si 0.94 38.99 27.47 68.60 1.88 40.87 15 4 H -0.26 -10.46 7.11 99.48 0.71 -9.75 15 5 H -0.28 -11.58 7.11 99.48 0.71 -10.87 15 6 H -0.24 -8.99 6.54 99.48 0.65 -8.34 15 7 C -0.55 -28.32 9.83 25.60 0.25 -28.07 15 8 H 0.05 2.91 7.84 -2.91 -0.02 2.88 15 9 C 0.23 9.67 4.42 85.63 0.38 10.05 15 10 N -0.67 -24.68 5.70 -350.67 -2.00 -26.68 15 11 C 0.34 11.57 8.42 179.44 1.51 13.08 15 12 N -0.56 -17.80 10.02 -187.40 -1.88 -19.68 15 13 C 0.03 1.04 6.67 40.48 0.27 1.31 15 14 C 0.60 16.95 8.06 86.59 0.70 17.65 15 15 N -0.82 -16.48 8.87 -176.05 -1.56 -18.04 15 16 O -0.57 -18.96 17.50 -4.20 -0.07 -19.04 15 17 C -0.22 -6.21 10.83 67.09 0.73 -5.48 15 18 S 0.10 2.79 22.62 -56.49 -1.28 1.51 15 19 H 0.27 14.61 8.31 -92.71 -0.77 13.84 15 20 H 0.03 1.35 7.20 -2.38 -0.02 1.33 15 21 H 0.03 1.26 7.57 -2.39 -0.02 1.24 15 22 H 0.41 15.11 8.44 -92.71 -0.78 14.32 15 23 H 0.42 7.80 8.31 -92.70 -0.77 7.03 15 24 H 0.42 6.23 8.93 -92.71 -0.83 5.40 15 25 H 0.20 4.74 8.01 -2.91 -0.02 4.72 15 Total: -1.00 -60.94 245.20 -1.48 -62.41 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -1.17 Total: 21.81 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 4.30 Total: 10.25 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -5.14 Total: -117.82 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.07 Total: -19.04 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 1.88 Total: 40.87 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -1.28 Total: 1.51 kcal Total: -60.94 -1.48 -62.41 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306175195.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.472 kcal (2) G-P(sol) polarization free energy of solvation -60.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds