Wall clock time and date at job start Mon Mar 30 2020 02:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38048 * 119.99777 * 2 1 4 4 C 1.38845 * 120.02389 * 180.02562 * 3 2 1 5 5 O 1.35806 * 120.00280 * 179.97438 * 4 3 2 6 6 C 1.34814 * 116.99822 * 354.38226 * 5 4 3 7 7 H 1.08003 * 119.99908 * 5.06984 * 6 5 4 8 8 C 1.38615 * 120.00122 * 185.06499 * 6 5 4 9 9 N 1.31580 * 120.00229 * 180.02562 * 8 6 5 10 10 Si 1.86806 * 119.99924 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.46988 * 89.99754 * 10 8 6 12 12 H 1.48497 * 109.47359 * 210.00040 * 10 8 6 13 13 H 1.48502 * 109.47038 * 330.00070 * 10 8 6 14 14 C 1.39032 * 119.99817 * 359.97438 * 4 3 2 15 15 Cl 1.73602 * 120.00729 * 179.97438 * 14 4 3 16 16 C 1.38088 * 119.98318 * 0.02562 * 14 4 3 17 17 C 1.38939 * 119.98926 * 180.02562 * 2 1 3 18 18 N 1.39768 * 119.99927 * 0.02562 * 17 2 1 19 19 H 1.09004 * 109.46707 * 269.98104 * 1 2 3 20 20 H 1.09000 * 109.47249 * 29.97335 * 1 2 3 21 21 H 1.08987 * 109.47595 * 149.97845 * 1 2 3 22 22 H 1.08008 * 119.98969 * 0.02562 * 3 2 1 23 23 H 0.97002 * 120.00208 * 179.97438 * 9 8 6 24 24 H 1.08008 * 120.01012 * 180.25361 * 16 14 4 25 25 H 0.97005 * 119.99939 * 179.97438 * 18 17 2 26 26 H 0.96998 * 120.00010 * 359.97438 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1956 0.0000 4 6 3.5856 1.1962 -0.0005 5 8 4.2642 2.3726 -0.0011 6 6 3.5344 3.5000 -0.1186 7 1 2.4557 3.4468 -0.1244 8 6 4.1684 4.7274 -0.2319 9 7 3.4562 5.8278 -0.3462 10 14 6.0342 4.8193 -0.2225 11 1 6.5423 4.7078 -1.6133 12 1 6.4630 6.1167 0.3588 13 1 6.5804 3.7061 0.5948 14 6 4.2813 -0.0076 -0.0005 15 17 6.0173 -0.0071 -0.0019 16 6 3.5910 -1.2035 -0.0005 17 6 2.2014 -1.2034 -0.0005 18 7 1.5024 -2.4137 -0.0016 19 1 -0.3633 -0.0003 1.0277 20 1 -0.3634 0.8902 -0.5134 21 1 -0.3634 -0.8897 -0.5141 22 1 1.6569 2.1308 0.0004 23 1 3.8999 6.6868 -0.4251 24 1 4.1310 -2.1389 0.0036 25 1 1.9872 -3.2538 -0.0024 26 1 0.5324 -2.4135 -0.0016 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306357727.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:09 Heat of formation + Delta-G solvation = -32.122358 kcal Electronic energy + Delta-G solvation = -13317.178561 eV Core-core repulsion = 10807.426306 eV Total energy + Delta-G solvation = -2509.752256 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.045 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.00856 -38.93128 -37.36602 -34.80317 -34.11648 -33.21503 -29.28225 -28.07242 -26.49925 -23.44484 -22.04620 -19.96467 -18.84896 -17.95552 -17.48849 -16.24013 -15.85369 -15.62603 -15.26126 -14.78919 -14.49368 -14.22061 -14.07885 -13.70088 -13.47910 -12.75924 -12.71963 -12.49287 -12.39850 -12.05958 -11.75388 -11.34515 -11.08243 -10.46313 -9.56020 -8.45347 -8.09657 -6.12168 0.29480 0.73923 1.30873 1.35735 1.37195 1.54798 2.31831 2.73307 3.01559 3.10278 3.25401 3.96199 4.07848 4.32381 4.63569 4.71740 4.83084 4.96458 5.06184 5.11474 5.29387 5.61467 5.68847 5.77369 6.07831 6.70693 6.90712 7.18601 7.66003 8.66390 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.029418 B = 0.010119 C = 0.007564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.570022 B = 2766.417897 C = 3700.737123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.118 4.118 3 C -0.178 4.178 4 C 0.080 3.920 5 O -0.237 6.237 6 C -0.390 4.390 7 H 0.085 0.915 8 C 0.015 3.985 9 N -0.924 5.924 10 Si 0.956 3.044 11 H -0.269 1.269 12 H -0.269 1.269 13 H -0.263 1.263 14 C -0.068 4.068 15 Cl -0.081 7.081 16 C -0.143 4.143 17 C 0.172 3.828 18 N -0.863 5.863 19 H 0.079 0.921 20 H 0.061 0.939 21 H 0.088 0.912 22 H 0.121 0.879 23 H 0.282 0.718 24 H 0.156 0.844 25 H 0.407 0.593 26 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.030 -15.958 0.635 16.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.123 4.123 3 C -0.198 4.198 4 C 0.029 3.971 5 O -0.145 6.145 6 C -0.467 4.467 7 H 0.102 0.898 8 C -0.183 4.183 9 N -0.566 5.566 10 Si 0.779 3.221 11 H -0.194 1.194 12 H -0.194 1.194 13 H -0.187 1.187 14 C -0.097 4.097 15 Cl -0.052 7.052 16 C -0.167 4.167 17 C 0.067 3.933 18 N -0.409 5.409 19 H 0.097 0.903 20 H 0.080 0.920 21 H 0.106 0.894 22 H 0.138 0.862 23 H 0.092 0.908 24 H 0.173 0.827 25 H 0.236 0.764 26 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -2.623 -15.652 0.635 15.883 hybrid contribution 0.570 0.502 -0.047 0.761 sum -2.053 -15.150 0.589 15.300 Atomic orbital electron populations 1.20669 0.88840 1.03364 1.02981 1.19550 0.97464 0.90472 1.04766 1.20966 0.92434 0.99041 1.07361 1.19062 0.91351 0.85804 1.00833 1.83595 1.35443 1.11719 1.83774 1.20692 0.92012 0.82895 1.51089 0.89796 1.25083 1.04011 0.93355 0.95885 1.69727 1.37848 0.98585 1.50454 0.85411 0.79254 0.78048 0.79372 1.19368 1.19357 1.18701 1.19929 0.83786 0.92296 1.13648 1.98291 1.10643 1.98918 1.97345 1.20264 0.92473 0.95935 1.08010 1.17136 0.89994 0.87224 0.98901 1.42149 1.09024 1.03538 1.86155 0.90271 0.91985 0.89381 0.86174 0.90796 0.82663 0.76358 0.76279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.44 9.57 71.24 0.68 -1.76 15 2 C -0.12 -3.87 5.90 -19.74 -0.12 -3.98 15 3 C -0.18 -7.66 8.81 22.37 0.20 -7.46 15 4 C 0.08 3.79 6.64 22.61 0.15 3.94 15 5 O -0.24 -13.09 8.04 -23.20 -0.19 -13.27 15 6 C -0.39 -23.09 9.94 67.91 0.68 -22.42 15 7 H 0.08 5.12 5.43 -2.91 -0.02 5.10 15 8 C 0.01 0.86 5.49 84.82 0.47 1.33 15 9 N -0.92 -55.75 13.96 21.61 0.30 -55.45 15 10 Si 0.96 47.00 28.62 68.60 1.96 48.96 15 11 H -0.27 -12.80 7.11 99.48 0.71 -12.10 15 12 H -0.27 -12.35 7.11 99.48 0.71 -11.64 15 13 H -0.26 -13.09 7.11 99.48 0.71 -12.38 15 14 C -0.07 -2.75 6.33 22.42 0.14 -2.61 15 15 Cl -0.08 -3.10 28.50 -2.72 -0.08 -3.18 15 16 C -0.14 -4.51 9.67 22.41 0.22 -4.29 15 17 C 0.17 4.90 6.74 38.22 0.26 5.16 15 18 N -0.86 -15.56 8.99 -51.27 -0.46 -16.02 15 19 H 0.08 1.70 8.14 -2.38 -0.02 1.68 15 20 H 0.06 1.58 8.08 -2.39 -0.02 1.56 15 21 H 0.09 1.53 6.54 -2.39 -0.02 1.52 15 22 H 0.12 5.62 5.63 -2.91 -0.02 5.60 15 23 H 0.28 15.72 8.31 -92.71 -0.77 14.95 15 24 H 0.16 3.84 8.06 -2.91 -0.02 3.82 15 25 H 0.41 5.40 8.84 -92.70 -0.82 4.58 15 26 H 0.41 5.66 6.81 -92.71 -0.63 5.03 15 Total: -1.00 -67.34 244.38 4.00 -63.34 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -0.21 Total: 7.72 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: 2.67 Total: -32.10 kcal Atomic # 7 Polarization: -71.31 SS G_CDS: -0.16 Total: -71.47 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.19 Total: -13.27 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 1.96 Total: 48.96 kcal Atomic # 17 Polarization: -3.10 SS G_CDS: -0.08 Total: -3.18 kcal Total: -67.34 4.00 -63.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306357727.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.223 kcal (2) G-P(sol) polarization free energy of solvation -67.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds