Wall clock time and date at job start Mon Mar 30 2020 02:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37815 * 119.99846 * 2 1 4 4 N 1.30256 * 124.73639 * 0.02803 * 3 2 1 5 5 C 1.30853 * 117.27541 * 179.97438 * 4 3 2 6 6 C 1.36862 * 114.00036 * 359.97438 * 5 4 3 7 7 C 1.41848 * 126.11315 * 180.02562 * 6 5 4 8 8 O 1.21793 * 119.99983 * 359.97438 * 7 6 5 9 9 N 1.34772 * 119.99925 * 179.97438 * 7 6 5 10 10 C 1.36913 * 120.00215 * 180.02562 * 9 7 6 11 11 H 1.08001 * 119.99684 * 359.97438 * 10 9 7 12 12 C 1.38971 * 120.00068 * 179.97438 * 10 9 7 13 13 N 1.31417 * 120.00230 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99642 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47122 * 90.00313 * 14 12 10 16 16 H 1.48503 * 109.46619 * 210.00161 * 14 12 10 17 17 H 1.48493 * 109.47316 * 329.99520 * 14 12 10 18 18 S 1.70914 * 124.73732 * 179.72022 * 3 2 1 19 19 H 1.09005 * 109.47054 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47444 * 299.99705 * 1 2 3 21 21 H 1.08997 * 109.47066 * 59.99975 * 1 2 3 22 22 H 0.97000 * 120.00746 * 179.97438 * 2 1 3 23 23 H 1.07996 * 122.99746 * 179.97438 * 5 4 3 24 24 H 0.97008 * 119.99658 * 359.97438 * 9 7 6 25 25 H 0.97006 * 120.00236 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1540 1.1935 0.0000 4 7 1.5981 2.3715 0.0005 5 6 2.3939 3.4102 0.0010 6 6 3.7250 3.0916 0.0014 7 6 4.8047 4.0115 0.0024 8 8 4.5843 5.2093 0.0025 9 7 6.0746 3.5600 0.0032 10 6 7.1168 4.4478 0.0047 11 1 6.9214 5.5100 0.0048 12 6 8.4262 3.9822 0.0061 13 7 8.6641 2.6898 0.0064 14 14 9.8482 5.1937 0.0089 15 1 10.2232 5.5135 1.4097 16 1 11.0122 4.5921 -0.6901 17 1 9.4397 6.4381 -0.6908 18 16 3.8573 1.3347 0.0069 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5137 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.9501 -0.8400 0.0004 23 1 2.0327 4.4279 0.0010 24 1 6.2501 2.6059 0.0034 25 1 9.5781 2.3648 0.0070 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307751085.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:20 Heat of formation + Delta-G solvation = 11.556118 kcal Electronic energy + Delta-G solvation = -12936.168368 eV Core-core repulsion = 10462.646611 eV Total energy + Delta-G solvation = -2473.521757 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.047 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.40426 -38.00052 -35.53757 -34.01827 -31.39391 -29.38283 -27.15741 -25.24250 -23.68574 -20.98303 -19.02241 -18.66825 -17.83249 -16.32701 -15.65956 -14.99445 -14.85226 -14.41844 -13.92846 -13.72708 -13.52152 -12.79883 -12.61334 -12.31484 -11.66913 -11.16654 -11.00177 -10.45951 -10.30762 -10.06950 -9.60462 -9.38364 -8.91140 -8.56062 -8.09407 -7.42801 -6.56036 -3.87082 1.02852 1.42773 2.14757 3.08624 3.21627 3.24590 3.28535 3.33308 4.10286 4.30778 4.95677 5.07594 5.14453 5.27078 5.45083 5.70308 5.99213 6.33325 6.43788 7.00370 7.13689 7.42777 7.93320 8.26789 8.49143 9.04938 9.39793 9.94993 10.60723 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.061890 B = 0.006491 C = 0.005893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.310094 B = 4312.751276 C = 4749.915709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.701 5.701 3 C 0.290 3.710 4 N -0.545 5.545 5 C 0.124 3.876 6 C -0.273 4.273 7 C 0.506 3.494 8 O -0.593 6.593 9 N -0.546 5.546 10 C -0.290 4.290 11 H 0.110 0.890 12 C 0.022 3.978 13 N -0.889 5.889 14 Si 0.936 3.064 15 H -0.275 1.275 16 H -0.282 1.282 17 H -0.267 1.267 18 S 0.117 5.883 19 H 0.072 0.928 20 H 0.057 0.943 21 H 0.057 0.943 22 H 0.413 0.587 23 H 0.183 0.817 24 H 0.391 0.609 25 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.818 -8.769 -0.010 13.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.341 5.341 3 C -0.078 4.078 4 N -0.269 5.269 5 C -0.033 4.033 6 C -0.399 4.399 7 C 0.294 3.706 8 O -0.482 6.482 9 N -0.180 5.180 10 C -0.420 4.420 11 H 0.128 0.872 12 C -0.182 4.182 13 N -0.528 5.528 14 Si 0.762 3.238 15 H -0.201 1.201 16 H -0.207 1.207 17 H -0.191 1.191 18 S 0.367 5.633 19 H 0.091 0.909 20 H 0.076 0.924 21 H 0.076 0.924 22 H 0.249 0.751 23 H 0.200 0.800 24 H 0.225 0.775 25 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.687 -8.774 -0.008 13.069 hybrid contribution 0.695 0.378 0.007 0.791 sum -8.991 -8.396 -0.002 12.302 Atomic orbital electron populations 1.21502 0.78612 1.01623 1.02309 1.43419 1.06338 1.02966 1.81362 1.23706 0.93634 0.90449 1.00035 1.66091 1.38201 0.96486 1.26167 1.21899 0.86730 0.97742 0.96934 1.24842 0.99699 0.93670 1.21681 1.15229 0.81853 0.87378 0.86124 1.90674 1.84062 1.14986 1.58453 1.41978 1.04438 1.09571 1.61999 1.19874 0.84115 0.91836 1.46225 0.87209 1.25399 0.99053 0.96817 0.96902 1.69623 1.22251 1.12638 1.48334 0.85757 0.79499 0.79916 0.78609 1.20132 1.20714 1.19109 1.84013 1.01818 1.04906 1.72604 0.90922 0.92435 0.92437 0.75080 0.80043 0.77477 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.97 10.95 59.85 0.66 1.62 15 2 N -0.70 -7.94 5.84 -69.22 -0.40 -8.35 15 3 C 0.29 4.56 8.04 -87.98 -0.71 3.86 15 4 N -0.54 -9.71 10.06 -14.74 -0.15 -9.86 15 5 C 0.12 2.42 11.08 -18.47 -0.20 2.22 15 6 C -0.27 -5.85 6.32 -38.70 -0.24 -6.09 15 7 C 0.51 13.07 7.55 -14.88 -0.11 12.96 15 8 O -0.59 -17.03 16.35 5.11 0.08 -16.95 15 9 N -0.55 -14.54 5.27 -13.54 -0.07 -14.61 15 10 C -0.29 -8.17 9.68 -15.01 -0.15 -8.31 15 11 H 0.11 3.19 7.15 -52.49 -0.38 2.82 15 12 C 0.02 0.58 5.50 -17.46 -0.10 0.48 15 13 N -0.89 -23.92 13.05 55.50 0.72 -23.19 15 14 Si 0.94 20.68 29.55 -169.99 -5.02 15.66 15 15 H -0.28 -6.00 7.11 56.52 0.40 -5.60 15 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 17 H -0.27 -5.88 7.11 56.52 0.40 -5.47 15 18 S 0.12 2.01 22.19 -107.50 -2.39 -0.38 15 19 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 15 20 H 0.06 0.57 8.14 -51.93 -0.42 0.15 15 21 H 0.06 0.57 8.14 -51.93 -0.42 0.15 15 22 H 0.41 3.52 8.95 -40.82 -0.37 3.15 15 23 H 0.18 3.39 8.04 -52.49 -0.42 2.97 15 24 H 0.39 9.99 6.93 -40.82 -0.28 9.70 15 25 H 0.28 6.93 8.31 -40.82 -0.34 6.59 15 LS Contribution 246.56 15.07 3.72 3.72 Total: -1.00 -32.24 246.56 -6.21 -38.45 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -1.85 Total: 8.79 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -0.86 Total: 6.73 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.10 Total: -56.02 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: 0.08 Total: -16.95 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.39 Total: -0.38 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.24 -6.21 -38.45 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307751085.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.005 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds