Wall clock time and date at job start Mon Mar 30 2020 02:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37815 * 119.99846 * 2 1 4 4 N 1.30256 * 124.73639 * 0.02803 * 3 2 1 5 5 C 1.30853 * 117.27541 * 179.97438 * 4 3 2 6 6 C 1.36862 * 114.00036 * 359.97438 * 5 4 3 7 7 C 1.41848 * 126.11315 * 180.02562 * 6 5 4 8 8 O 1.21793 * 119.99983 * 359.97438 * 7 6 5 9 9 N 1.34772 * 119.99925 * 179.97438 * 7 6 5 10 10 C 1.36913 * 120.00215 * 180.02562 * 9 7 6 11 11 H 1.08001 * 119.99684 * 359.97438 * 10 9 7 12 12 C 1.38971 * 120.00068 * 179.97438 * 10 9 7 13 13 N 1.31417 * 120.00230 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99642 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47122 * 90.00313 * 14 12 10 16 16 H 1.48503 * 109.46619 * 210.00161 * 14 12 10 17 17 H 1.48493 * 109.47316 * 329.99520 * 14 12 10 18 18 S 1.70914 * 124.73732 * 179.72022 * 3 2 1 19 19 H 1.09005 * 109.47054 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47444 * 299.99705 * 1 2 3 21 21 H 1.08997 * 109.47066 * 59.99975 * 1 2 3 22 22 H 0.97000 * 120.00746 * 179.97438 * 2 1 3 23 23 H 1.07996 * 122.99746 * 179.97438 * 5 4 3 24 24 H 0.97008 * 119.99658 * 359.97438 * 9 7 6 25 25 H 0.97006 * 120.00236 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1540 1.1935 0.0000 4 7 1.5981 2.3715 0.0005 5 6 2.3939 3.4102 0.0010 6 6 3.7250 3.0916 0.0014 7 6 4.8047 4.0115 0.0024 8 8 4.5843 5.2093 0.0025 9 7 6.0746 3.5600 0.0032 10 6 7.1168 4.4478 0.0047 11 1 6.9214 5.5100 0.0048 12 6 8.4262 3.9822 0.0061 13 7 8.6641 2.6898 0.0064 14 14 9.8482 5.1937 0.0089 15 1 10.2232 5.5135 1.4097 16 1 11.0122 4.5921 -0.6901 17 1 9.4397 6.4381 -0.6908 18 16 3.8573 1.3347 0.0069 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5137 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.9501 -0.8400 0.0004 23 1 2.0327 4.4279 0.0010 24 1 6.2501 2.6059 0.0034 25 1 9.5781 2.3648 0.0070 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307751085.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:20 Heat of formation + Delta-G solvation = -13.278476 kcal Electronic energy + Delta-G solvation = -12937.245277 eV Core-core repulsion = 10462.646611 eV Total energy + Delta-G solvation = -2474.598666 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.047 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.95459 -39.83565 -36.74858 -36.03262 -33.41776 -30.92820 -28.31750 -27.04732 -25.13043 -22.65794 -20.63518 -20.21983 -19.63949 -17.90051 -17.22424 -16.64641 -16.33678 -15.82235 -15.62899 -15.39409 -15.19600 -14.32335 -14.07654 -13.58388 -13.03078 -12.96296 -12.58749 -12.39035 -12.10097 -11.63594 -11.25570 -10.90235 -10.53147 -10.35713 -10.10925 -8.76147 -8.54484 -5.99031 -0.45031 0.04703 0.67386 1.38839 1.41875 1.55874 1.68453 2.20886 2.28633 2.42745 3.23522 3.26217 3.64101 4.38731 4.44584 4.56672 4.68852 4.93888 5.03532 5.35379 5.75425 5.89543 6.14221 6.47757 6.90765 7.01477 7.40280 7.95629 8.63194 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.061890 B = 0.006491 C = 0.005893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.310094 B = 4312.751276 C = 4749.915709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.675 5.675 3 C 0.315 3.685 4 N -0.563 5.563 5 C 0.158 3.842 6 C -0.339 4.339 7 C 0.512 3.488 8 O -0.634 6.634 9 N -0.559 5.559 10 C -0.336 4.336 11 H 0.087 0.913 12 C -0.012 4.012 13 N -0.913 5.913 14 Si 1.001 2.999 15 H -0.268 1.268 16 H -0.267 1.267 17 H -0.270 1.270 18 S 0.151 5.849 19 H 0.118 0.882 20 H 0.053 0.947 21 H 0.053 0.947 22 H 0.431 0.569 23 H 0.184 0.816 24 H 0.393 0.607 25 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.980 -10.861 0.005 15.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.314 5.314 3 C -0.055 4.055 4 N -0.289 5.289 5 C -0.001 4.001 6 C -0.465 4.465 7 C 0.302 3.698 8 O -0.525 6.525 9 N -0.194 5.194 10 C -0.466 4.466 11 H 0.105 0.895 12 C -0.212 4.212 13 N -0.553 5.553 14 Si 0.824 3.176 15 H -0.193 1.193 16 H -0.191 1.191 17 H -0.195 1.195 18 S 0.401 5.599 19 H 0.136 0.864 20 H 0.072 0.928 21 H 0.072 0.928 22 H 0.270 0.730 23 H 0.201 0.799 24 H 0.228 0.772 25 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.869 -10.975 0.008 15.446 hybrid contribution 0.678 0.790 0.002 1.041 sum -10.191 -10.185 0.010 14.408 Atomic orbital electron populations 1.21811 0.76476 1.04588 1.01898 1.43809 1.07720 1.02114 1.77782 1.24085 0.93631 0.91390 0.96432 1.66216 1.37517 0.96639 1.28547 1.22060 0.86310 0.98563 0.93179 1.24346 0.98863 0.96011 1.27327 1.15760 0.82501 0.87578 0.83937 1.90611 1.84978 1.17171 1.59733 1.41918 1.04522 1.09389 1.63541 1.19830 0.85613 0.91270 1.49893 0.89519 1.26210 1.00701 0.98706 0.95628 1.69677 1.23168 1.13790 1.48682 0.84811 0.76414 0.77503 0.78908 1.19298 1.19127 1.19491 1.83790 1.02169 1.01224 1.72738 0.86391 0.92811 0.92814 0.72973 0.79912 0.77218 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.33 10.95 127.77 1.40 2.73 15 2 N -0.67 -12.37 5.84 -372.90 -2.18 -14.54 15 3 C 0.31 8.97 8.04 179.43 1.44 10.42 15 4 N -0.56 -18.90 10.06 -200.55 -2.02 -20.92 15 5 C 0.16 6.11 11.08 84.52 0.94 7.05 15 6 C -0.34 -14.68 6.32 22.84 0.14 -14.53 15 7 C 0.51 27.54 7.55 85.14 0.64 28.18 15 8 O -0.63 -38.17 16.35 -4.65 -0.08 -38.24 15 9 N -0.56 -31.04 5.27 -314.92 -1.66 -32.70 15 10 C -0.34 -19.80 9.68 84.08 0.81 -18.98 15 11 H 0.09 5.36 7.15 -2.91 -0.02 5.34 15 12 C -0.01 -0.63 5.50 84.93 0.47 -0.16 15 13 N -0.91 -49.70 13.05 21.67 0.28 -49.42 15 14 Si 1.00 42.92 29.55 68.60 2.03 44.95 15 15 H -0.27 -11.08 7.11 99.48 0.71 -10.37 15 16 H -0.27 -10.70 7.11 99.48 0.71 -9.99 15 17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 18 S 0.15 4.96 22.19 -56.49 -1.25 3.71 15 19 H 0.12 0.64 8.14 -2.38 -0.02 0.62 15 20 H 0.05 0.85 8.14 -2.39 -0.02 0.83 15 21 H 0.05 0.85 8.14 -2.39 -0.02 0.83 15 22 H 0.43 5.21 8.95 -92.71 -0.83 4.39 15 23 H 0.18 6.86 8.04 -2.91 -0.02 6.84 15 24 H 0.39 20.78 6.93 -92.70 -0.64 20.14 15 25 H 0.28 14.17 8.31 -92.70 -0.77 13.40 15 Total: -1.00 -72.10 246.56 0.75 -71.35 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -0.22 Total: 21.11 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 5.85 Total: 14.70 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -5.57 Total: -117.58 kcal Atomic # 8 Polarization: -38.17 SS G_CDS: -0.08 Total: -38.24 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: 4.96 SS G_CDS: -1.25 Total: 3.71 kcal Total: -72.10 0.75 -71.35 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307751085.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.075 kcal (2) G-P(sol) polarization free energy of solvation -72.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds