Wall clock time and date at job start Mon Mar 30 2020 02:57:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.37815 * 119.99846 * 2 1
4 4 N 1.30256 * 124.73639 * 0.02803 * 3 2 1
5 5 C 1.30853 * 117.27541 * 179.97438 * 4 3 2
6 6 C 1.36862 * 114.00036 * 359.97438 * 5 4 3
7 7 C 1.41848 * 126.11315 * 180.02562 * 6 5 4
8 8 O 1.21793 * 119.99983 * 359.97438 * 7 6 5
9 9 N 1.34772 * 119.99925 * 179.97438 * 7 6 5
10 10 C 1.36913 * 120.00215 * 180.02562 * 9 7 6
11 11 H 1.08001 * 119.99684 * 359.97438 * 10 9 7
12 12 C 1.38971 * 120.00068 * 179.97438 * 10 9 7
13 13 N 1.31417 * 120.00230 * 359.97438 * 12 10 9
14 14 Si 1.86804 * 119.99642 * 180.02562 * 12 10 9
15 15 H 1.48500 * 109.47122 * 90.00313 * 14 12 10
16 16 H 1.48503 * 109.46619 * 210.00161 * 14 12 10
17 17 H 1.48493 * 109.47316 * 329.99520 * 14 12 10
18 18 S 1.70914 * 124.73732 * 179.72022 * 3 2 1
19 19 H 1.09005 * 109.47054 * 179.97438 * 1 2 3
20 20 H 1.08994 * 109.47444 * 299.99705 * 1 2 3
21 21 H 1.08997 * 109.47066 * 59.99975 * 1 2 3
22 22 H 0.97000 * 120.00746 * 179.97438 * 2 1 3
23 23 H 1.07996 * 122.99746 * 179.97438 * 5 4 3
24 24 H 0.97008 * 119.99658 * 359.97438 * 9 7 6
25 25 H 0.97006 * 120.00236 * 179.97438 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1540 1.1935 0.0000
4 7 1.5981 2.3715 0.0005
5 6 2.3939 3.4102 0.0010
6 6 3.7250 3.0916 0.0014
7 6 4.8047 4.0115 0.0024
8 8 4.5843 5.2093 0.0025
9 7 6.0746 3.5600 0.0032
10 6 7.1168 4.4478 0.0047
11 1 6.9214 5.5100 0.0048
12 6 8.4262 3.9822 0.0061
13 7 8.6641 2.6898 0.0064
14 14 9.8482 5.1937 0.0089
15 1 10.2232 5.5135 1.4097
16 1 11.0122 4.5921 -0.6901
17 1 9.4397 6.4381 -0.6908
18 16 3.8573 1.3347 0.0069
19 1 -0.3633 -1.0277 -0.0005
20 1 -0.3634 0.5137 0.8899
21 1 -0.3633 0.5138 -0.8900
22 1 1.9501 -0.8400 0.0004
23 1 2.0327 4.4279 0.0010
24 1 6.2501 2.6059 0.0034
25 1 9.5781 2.3648 0.0070
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000307751085.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:57:20
Heat of formation + Delta-G solvation = -13.278476 kcal
Electronic energy + Delta-G solvation = -12937.245277 eV
Core-core repulsion = 10462.646611 eV
Total energy + Delta-G solvation = -2474.598666 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 227.047 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-40.95459 -39.83565 -36.74858 -36.03262 -33.41776 -30.92820 -28.31750 -27.04732
-25.13043 -22.65794 -20.63518 -20.21983 -19.63949 -17.90051 -17.22424 -16.64641
-16.33678 -15.82235 -15.62899 -15.39409 -15.19600 -14.32335 -14.07654 -13.58388
-13.03078 -12.96296 -12.58749 -12.39035 -12.10097 -11.63594 -11.25570 -10.90235
-10.53147 -10.35713 -10.10925 -8.76147 -8.54484 -5.99031 -0.45031 0.04703
0.67386 1.38839 1.41875 1.55874 1.68453 2.20886 2.28633 2.42745
3.23522 3.26217 3.64101 4.38731 4.44584 4.56672 4.68852 4.93888
5.03532 5.35379 5.75425 5.89543 6.14221 6.47757 6.90765 7.01477
7.40280 7.95629 8.63194
Molecular weight = 227.05amu
Principal moments of inertia in cm(-1)
A = 0.061890 B = 0.006491 C = 0.005893
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 452.310094 B = 4312.751276 C = 4749.915709
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.098 3.902
2 N -0.675 5.675
3 C 0.315 3.685
4 N -0.563 5.563
5 C 0.158 3.842
6 C -0.339 4.339
7 C 0.512 3.488
8 O -0.634 6.634
9 N -0.559 5.559
10 C -0.336 4.336
11 H 0.087 0.913
12 C -0.012 4.012
13 N -0.913 5.913
14 Si 1.001 2.999
15 H -0.268 1.268
16 H -0.267 1.267
17 H -0.270 1.270
18 S 0.151 5.849
19 H 0.118 0.882
20 H 0.053 0.947
21 H 0.053 0.947
22 H 0.431 0.569
23 H 0.184 0.816
24 H 0.393 0.607
25 H 0.283 0.717
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.980 -10.861 0.005 15.444
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.048 4.048
2 N -0.314 5.314
3 C -0.055 4.055
4 N -0.289 5.289
5 C -0.001 4.001
6 C -0.465 4.465
7 C 0.302 3.698
8 O -0.525 6.525
9 N -0.194 5.194
10 C -0.466 4.466
11 H 0.105 0.895
12 C -0.212 4.212
13 N -0.553 5.553
14 Si 0.824 3.176
15 H -0.193 1.193
16 H -0.191 1.191
17 H -0.195 1.195
18 S 0.401 5.599
19 H 0.136 0.864
20 H 0.072 0.928
21 H 0.072 0.928
22 H 0.270 0.730
23 H 0.201 0.799
24 H 0.228 0.772
25 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -10.869 -10.975 0.008 15.446
hybrid contribution 0.678 0.790 0.002 1.041
sum -10.191 -10.185 0.010 14.408
Atomic orbital electron populations
1.21811 0.76476 1.04588 1.01898 1.43809 1.07720 1.02114 1.77782
1.24085 0.93631 0.91390 0.96432 1.66216 1.37517 0.96639 1.28547
1.22060 0.86310 0.98563 0.93179 1.24346 0.98863 0.96011 1.27327
1.15760 0.82501 0.87578 0.83937 1.90611 1.84978 1.17171 1.59733
1.41918 1.04522 1.09389 1.63541 1.19830 0.85613 0.91270 1.49893
0.89519 1.26210 1.00701 0.98706 0.95628 1.69677 1.23168 1.13790
1.48682 0.84811 0.76414 0.77503 0.78908 1.19298 1.19127 1.19491
1.83790 1.02169 1.01224 1.72738 0.86391 0.92811 0.92814 0.72973
0.79912 0.77218 0.90766
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 1.33 10.95 127.77 1.40 2.73 15
2 N -0.67 -12.37 5.84 -372.90 -2.18 -14.54 15
3 C 0.31 8.97 8.04 179.43 1.44 10.42 15
4 N -0.56 -18.90 10.06 -200.55 -2.02 -20.92 15
5 C 0.16 6.11 11.08 84.52 0.94 7.05 15
6 C -0.34 -14.68 6.32 22.84 0.14 -14.53 15
7 C 0.51 27.54 7.55 85.14 0.64 28.18 15
8 O -0.63 -38.17 16.35 -4.65 -0.08 -38.24 15
9 N -0.56 -31.04 5.27 -314.92 -1.66 -32.70 15
10 C -0.34 -19.80 9.68 84.08 0.81 -18.98 15
11 H 0.09 5.36 7.15 -2.91 -0.02 5.34 15
12 C -0.01 -0.63 5.50 84.93 0.47 -0.16 15
13 N -0.91 -49.70 13.05 21.67 0.28 -49.42 15
14 Si 1.00 42.92 29.55 68.60 2.03 44.95 15
15 H -0.27 -11.08 7.11 99.48 0.71 -10.37 15
16 H -0.27 -10.70 7.11 99.48 0.71 -9.99 15
17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15
18 S 0.15 4.96 22.19 -56.49 -1.25 3.71 15
19 H 0.12 0.64 8.14 -2.38 -0.02 0.62 15
20 H 0.05 0.85 8.14 -2.39 -0.02 0.83 15
21 H 0.05 0.85 8.14 -2.39 -0.02 0.83 15
22 H 0.43 5.21 8.95 -92.71 -0.83 4.39 15
23 H 0.18 6.86 8.04 -2.91 -0.02 6.84 15
24 H 0.39 20.78 6.93 -92.70 -0.64 20.14 15
25 H 0.28 14.17 8.31 -92.70 -0.77 13.40 15
Total: -1.00 -72.10 246.56 0.75 -71.35
By element:
Atomic # 1 Polarization: 21.33 SS G_CDS: -0.22 Total: 21.11 kcal
Atomic # 6 Polarization: 8.85 SS G_CDS: 5.85 Total: 14.70 kcal
Atomic # 7 Polarization: -112.00 SS G_CDS: -5.57 Total: -117.58 kcal
Atomic # 8 Polarization: -38.17 SS G_CDS: -0.08 Total: -38.24 kcal
Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal
Atomic # 16 Polarization: 4.96 SS G_CDS: -1.25 Total: 3.71 kcal
Total: -72.10 0.75 -71.35 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307751085.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.075 kcal
(2) G-P(sol) polarization free energy of solvation -72.103 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.028 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.353 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.278 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds