Wall clock time and date at job start Mon Mar 30 2020 02:58:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.35729 * 117.00040 * 2 1
4 4 C 1.38165 * 120.14563 * 359.97438 * 3 2 1
5 5 C 1.38584 * 120.39074 * 180.02562 * 4 3 2
6 6 C 1.38453 * 120.69227 * 359.97438 * 5 4 3
7 7 Cl 1.73595 * 119.85604 * 180.02562 * 6 5 4
8 8 C 1.38580 * 120.28078 * 0.02562 * 6 5 4
9 9 N 1.38966 * 120.19974 * 180.02562 * 8 6 5
10 10 C 1.41272 * 120.15211 * 179.72086 * 3 2 1
11 11 C 1.40917 * 120.33237 * 359.97438 * 10 3 2
12 12 H 1.07999 * 119.99665 * 136.71202 * 11 10 3
13 13 C 1.39908 * 119.99878 * 316.71202 * 11 10 3
14 14 N 1.30927 * 119.99548 * 161.12799 * 13 11 10
15 15 Si 1.86794 * 120.00136 * 341.12758 * 13 11 10
16 16 H 1.48496 * 109.47251 * 95.14249 * 15 13 11
17 17 H 1.48505 * 109.47067 * 215.14322 * 15 13 11
18 18 H 1.48503 * 109.46947 * 335.13902 * 15 13 11
19 19 H 1.09004 * 109.46878 * 60.00229 * 1 2 3
20 20 H 1.08999 * 109.47405 * 300.00059 * 1 2 3
21 21 H 1.09001 * 109.47049 * 179.97438 * 1 2 3
22 22 H 1.07995 * 119.80099 * 0.02562 * 4 3 2
23 23 H 1.08001 * 119.65147 * 179.97438 * 5 4 3
24 24 H 0.97001 * 119.99590 * 354.36807 * 9 8 6
25 25 H 0.97001 * 119.99473 * 174.36655 * 9 8 6
26 26 H 0.96997 * 119.99802 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0452 1.2093 0.0000
4 6 1.2956 2.3700 -0.0005
5 6 1.9195 3.6075 -0.0011
6 6 3.3008 3.7025 -0.0006
7 17 4.0596 5.2639 -0.0006
8 6 4.0801 2.5566 0.0000
9 7 5.4663 2.6540 0.0010
10 6 3.4557 1.2870 0.0060
11 6 4.2332 0.1117 0.0125
12 1 5.1017 0.0353 -0.6249
13 6 3.8799 -0.9561 0.8446
14 7 4.3459 -2.1556 0.6037
15 14 2.7433 -0.6703 2.2991
16 1 1.3462 -0.9823 1.9044
17 1 3.1482 -1.5509 3.4242
18 1 2.8321 0.7495 2.7252
19 1 -0.3633 0.5138 -0.8900
20 1 -0.3634 0.5138 0.8900
21 1 -0.3633 -1.0277 -0.0005
22 1 0.2172 2.3125 -0.0005
23 1 1.3220 4.5071 -0.0019
24 1 5.8915 3.5219 -0.0810
25 1 6.0086 1.8540 0.0839
26 1 4.1013 -2.8959 1.1807
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000575715539.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:58:46
Heat of formation + Delta-G solvation = -41.792703 kcal
Electronic energy + Delta-G solvation = -13856.193149 eV
Core-core repulsion = 11346.021556 eV
Total energy + Delta-G solvation = -2510.171593 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 227.045 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-40.79577 -38.60606 -36.96475 -35.24697 -34.63776 -31.87775 -29.08229 -28.06162
-26.69213 -22.93848 -22.11546 -19.61551 -18.62320 -17.99980 -17.26164 -16.50937
-16.16133 -15.95843 -15.76890 -14.90662 -14.27671 -14.05967 -13.62002 -13.32085
-13.02194 -12.71370 -12.54668 -12.21096 -12.01697 -11.90232 -11.65032 -11.23188
-10.99198 -10.65439 -8.93548 -8.59381 -8.25644 -6.17742 0.67957 0.89485
1.36856 1.45317 1.50581 1.54153 2.33720 2.73171 2.80810 3.39825
3.45261 4.23759 4.43019 4.49608 4.53892 4.75507 4.78125 4.88883
5.30491 5.41187 5.61160 5.75289 5.88340 6.28514 6.52837 6.83874
6.97134 7.14516 7.26202 8.47818
Molecular weight = 227.05amu
Principal moments of inertia in cm(-1)
A = 0.030765 B = 0.012326 C = 0.009874
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 909.921468 B = 2271.022810 C = 2835.119051
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.017 3.983
2 O -0.325 6.325
3 C 0.055 3.945
4 C -0.220 4.220
5 C -0.113 4.113
6 C -0.131 4.131
7 Cl -0.087 7.087
8 C 0.178 3.822
9 N -0.860 5.860
10 C -0.016 4.016
11 C -0.484 4.484
12 H 0.054 0.946
13 C 0.067 3.933
14 N -0.874 5.874
15 Si 0.956 3.044
16 H -0.235 1.235
17 H -0.299 1.299
18 H -0.276 1.276
19 H 0.068 0.932
20 H 0.057 0.943
21 H 0.102 0.898
22 H 0.144 0.856
23 H 0.142 0.858
24 H 0.398 0.602
25 H 0.401 0.599
26 H 0.281 0.719
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.130 8.405 0.928 10.444
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 O -0.239 6.239
3 C 0.009 3.991
4 C -0.241 4.241
5 C -0.133 4.133
6 C -0.163 4.163
7 Cl -0.059 7.059
8 C 0.071 3.929
9 N -0.401 5.401
10 C -0.022 4.022
11 C -0.516 4.516
12 H 0.072 0.928
13 C -0.144 4.144
14 N -0.504 5.504
15 Si 0.783 3.217
16 H -0.159 1.159
17 H -0.227 1.227
18 H -0.201 1.201
19 H 0.086 0.914
20 H 0.076 0.924
21 H 0.120 0.880
22 H 0.161 0.839
23 H 0.160 0.840
24 H 0.228 0.772
25 H 0.230 0.770
26 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -5.969 8.095 0.946 10.102
hybrid contribution 0.209 -0.044 0.436 0.485
sum -5.759 8.051 1.381 9.995
Atomic orbital electron populations
1.23144 0.78551 1.04205 1.01857 1.86143 1.21649 1.27326 1.88820
1.19241 0.91927 0.84490 1.03467 1.20874 0.99910 0.91038 1.12274
1.20411 0.91310 0.97606 1.03931 1.20163 0.93127 0.83551 1.19490
1.98240 1.82428 1.27366 1.97819 1.17633 0.85342 0.91173 0.98743
1.42061 1.02611 1.11493 1.83931 1.16706 0.89746 0.91748 1.04014
1.18561 1.12300 0.97394 1.23362 0.92804 1.26344 0.95085 0.93261
0.99665 1.69799 1.42658 1.00832 1.37115 0.85613 0.81468 0.77924
0.76705 1.15905 1.22692 1.20130 0.91388 0.92420 0.88003 0.83878
0.84027 0.77189 0.76984 0.90934
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.54 8.95 113.37 1.01 1.55 15
2 O -0.32 -14.47 5.93 -90.52 -0.54 -15.00 15
3 C 0.06 2.52 5.17 23.00 0.12 2.64 15
4 C -0.22 -8.38 9.02 22.34 0.20 -8.18 15
5 C -0.11 -4.10 9.80 22.40 0.22 -3.88 15
6 C -0.13 -5.15 6.33 22.40 0.14 -5.01 15
7 Cl -0.09 -2.79 27.57 -2.72 -0.07 -2.86 15
8 C 0.18 7.90 6.78 38.89 0.26 8.16 15
9 N -0.86 -33.52 8.92 -50.39 -0.45 -33.97 15
10 C -0.02 -0.80 4.71 -21.08 -0.10 -0.90 15
11 C -0.48 -26.96 8.37 23.33 0.20 -26.77 15
12 H 0.05 3.20 7.63 -2.91 -0.02 3.18 15
13 C 0.07 3.72 4.93 85.23 0.42 4.14 15
14 N -0.87 -50.08 13.93 21.83 0.30 -49.78 15
15 Si 0.96 45.20 24.58 68.60 1.69 46.89 15
16 H -0.23 -10.13 5.43 99.48 0.54 -9.59 15
17 H -0.30 -13.75 7.11 99.48 0.71 -13.04 15
18 H -0.28 -13.50 7.11 99.48 0.71 -12.80 15
19 H 0.07 1.83 7.66 -2.39 -0.02 1.82 15
20 H 0.06 1.62 7.66 -2.39 -0.02 1.61 15
21 H 0.10 2.81 8.14 -2.39 -0.02 2.79 15
22 H 0.14 4.39 6.27 -2.91 -0.02 4.37 15
23 H 0.14 4.21 8.06 -2.91 -0.02 4.19 15
24 H 0.40 13.18 7.49 -92.71 -0.69 12.49 15
25 H 0.40 16.07 7.47 -92.71 -0.69 15.38 15
26 H 0.28 14.84 8.30 -92.71 -0.77 14.07 15
Total: -1.00 -61.61 233.33 3.08 -58.53
By element:
Atomic # 1 Polarization: 24.78 SS G_CDS: -0.32 Total: 24.46 kcal
Atomic # 6 Polarization: -30.73 SS G_CDS: 2.48 Total: -28.25 kcal
Atomic # 7 Polarization: -83.61 SS G_CDS: -0.15 Total: -83.75 kcal
Atomic # 8 Polarization: -14.47 SS G_CDS: -0.54 Total: -15.00 kcal
Atomic # 14 Polarization: 45.20 SS G_CDS: 1.69 Total: 46.89 kcal
Atomic # 17 Polarization: -2.79 SS G_CDS: -0.07 Total: -2.86 kcal
Total: -61.61 3.08 -58.53 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000575715539.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.737 kcal
(2) G-P(sol) polarization free energy of solvation -61.612 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.875 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.083 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.529 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.793 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds