Wall clock time and date at job start Mon Mar 30 2020 02:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35729 * 117.00040 * 2 1 4 4 C 1.38165 * 120.14563 * 359.97438 * 3 2 1 5 5 C 1.38584 * 120.39074 * 180.02562 * 4 3 2 6 6 C 1.38453 * 120.69227 * 359.97438 * 5 4 3 7 7 Cl 1.73595 * 119.85604 * 180.02562 * 6 5 4 8 8 C 1.38580 * 120.28078 * 0.02562 * 6 5 4 9 9 N 1.38966 * 120.19974 * 180.02562 * 8 6 5 10 10 C 1.41272 * 120.15211 * 179.72086 * 3 2 1 11 11 C 1.40917 * 120.33237 * 359.97438 * 10 3 2 12 12 H 1.07999 * 119.99665 * 136.71202 * 11 10 3 13 13 C 1.39908 * 119.99878 * 316.71202 * 11 10 3 14 14 N 1.30927 * 119.99548 * 161.12799 * 13 11 10 15 15 Si 1.86794 * 120.00136 * 341.12758 * 13 11 10 16 16 H 1.48496 * 109.47251 * 95.14249 * 15 13 11 17 17 H 1.48505 * 109.47067 * 215.14322 * 15 13 11 18 18 H 1.48503 * 109.46947 * 335.13902 * 15 13 11 19 19 H 1.09004 * 109.46878 * 60.00229 * 1 2 3 20 20 H 1.08999 * 109.47405 * 300.00059 * 1 2 3 21 21 H 1.09001 * 109.47049 * 179.97438 * 1 2 3 22 22 H 1.07995 * 119.80099 * 0.02562 * 4 3 2 23 23 H 1.08001 * 119.65147 * 179.97438 * 5 4 3 24 24 H 0.97001 * 119.99590 * 354.36807 * 9 8 6 25 25 H 0.97001 * 119.99473 * 174.36655 * 9 8 6 26 26 H 0.96997 * 119.99802 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2956 2.3700 -0.0005 5 6 1.9195 3.6075 -0.0011 6 6 3.3008 3.7025 -0.0006 7 17 4.0596 5.2639 -0.0006 8 6 4.0801 2.5566 0.0000 9 7 5.4663 2.6540 0.0010 10 6 3.4557 1.2870 0.0060 11 6 4.2332 0.1117 0.0125 12 1 5.1017 0.0353 -0.6249 13 6 3.8799 -0.9561 0.8446 14 7 4.3459 -2.1556 0.6037 15 14 2.7433 -0.6703 2.2991 16 1 1.3462 -0.9823 1.9044 17 1 3.1482 -1.5509 3.4242 18 1 2.8321 0.7495 2.7252 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 0.2172 2.3125 -0.0005 23 1 1.3220 4.5071 -0.0019 24 1 5.8915 3.5219 -0.0810 25 1 6.0086 1.8540 0.0839 26 1 4.1013 -2.8959 1.1807 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715539.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:46 Heat of formation + Delta-G solvation = -41.792703 kcal Electronic energy + Delta-G solvation = -13856.193149 eV Core-core repulsion = 11346.021556 eV Total energy + Delta-G solvation = -2510.171593 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.79577 -38.60606 -36.96475 -35.24697 -34.63776 -31.87775 -29.08229 -28.06162 -26.69213 -22.93848 -22.11546 -19.61551 -18.62320 -17.99980 -17.26164 -16.50937 -16.16133 -15.95843 -15.76890 -14.90662 -14.27671 -14.05967 -13.62002 -13.32085 -13.02194 -12.71370 -12.54668 -12.21096 -12.01697 -11.90232 -11.65032 -11.23188 -10.99198 -10.65439 -8.93548 -8.59381 -8.25644 -6.17742 0.67957 0.89485 1.36856 1.45317 1.50581 1.54153 2.33720 2.73171 2.80810 3.39825 3.45261 4.23759 4.43019 4.49608 4.53892 4.75507 4.78125 4.88883 5.30491 5.41187 5.61160 5.75289 5.88340 6.28514 6.52837 6.83874 6.97134 7.14516 7.26202 8.47818 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.030765 B = 0.012326 C = 0.009874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.921468 B = 2271.022810 C = 2835.119051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.325 6.325 3 C 0.055 3.945 4 C -0.220 4.220 5 C -0.113 4.113 6 C -0.131 4.131 7 Cl -0.087 7.087 8 C 0.178 3.822 9 N -0.860 5.860 10 C -0.016 4.016 11 C -0.484 4.484 12 H 0.054 0.946 13 C 0.067 3.933 14 N -0.874 5.874 15 Si 0.956 3.044 16 H -0.235 1.235 17 H -0.299 1.299 18 H -0.276 1.276 19 H 0.068 0.932 20 H 0.057 0.943 21 H 0.102 0.898 22 H 0.144 0.856 23 H 0.142 0.858 24 H 0.398 0.602 25 H 0.401 0.599 26 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.130 8.405 0.928 10.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.239 6.239 3 C 0.009 3.991 4 C -0.241 4.241 5 C -0.133 4.133 6 C -0.163 4.163 7 Cl -0.059 7.059 8 C 0.071 3.929 9 N -0.401 5.401 10 C -0.022 4.022 11 C -0.516 4.516 12 H 0.072 0.928 13 C -0.144 4.144 14 N -0.504 5.504 15 Si 0.783 3.217 16 H -0.159 1.159 17 H -0.227 1.227 18 H -0.201 1.201 19 H 0.086 0.914 20 H 0.076 0.924 21 H 0.120 0.880 22 H 0.161 0.839 23 H 0.160 0.840 24 H 0.228 0.772 25 H 0.230 0.770 26 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.969 8.095 0.946 10.102 hybrid contribution 0.209 -0.044 0.436 0.485 sum -5.759 8.051 1.381 9.995 Atomic orbital electron populations 1.23144 0.78551 1.04205 1.01857 1.86143 1.21649 1.27326 1.88820 1.19241 0.91927 0.84490 1.03467 1.20874 0.99910 0.91038 1.12274 1.20411 0.91310 0.97606 1.03931 1.20163 0.93127 0.83551 1.19490 1.98240 1.82428 1.27366 1.97819 1.17633 0.85342 0.91173 0.98743 1.42061 1.02611 1.11493 1.83931 1.16706 0.89746 0.91748 1.04014 1.18561 1.12300 0.97394 1.23362 0.92804 1.26344 0.95085 0.93261 0.99665 1.69799 1.42658 1.00832 1.37115 0.85613 0.81468 0.77924 0.76705 1.15905 1.22692 1.20130 0.91388 0.92420 0.88003 0.83878 0.84027 0.77189 0.76984 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 8.95 113.37 1.01 1.55 15 2 O -0.32 -14.47 5.93 -90.52 -0.54 -15.00 15 3 C 0.06 2.52 5.17 23.00 0.12 2.64 15 4 C -0.22 -8.38 9.02 22.34 0.20 -8.18 15 5 C -0.11 -4.10 9.80 22.40 0.22 -3.88 15 6 C -0.13 -5.15 6.33 22.40 0.14 -5.01 15 7 Cl -0.09 -2.79 27.57 -2.72 -0.07 -2.86 15 8 C 0.18 7.90 6.78 38.89 0.26 8.16 15 9 N -0.86 -33.52 8.92 -50.39 -0.45 -33.97 15 10 C -0.02 -0.80 4.71 -21.08 -0.10 -0.90 15 11 C -0.48 -26.96 8.37 23.33 0.20 -26.77 15 12 H 0.05 3.20 7.63 -2.91 -0.02 3.18 15 13 C 0.07 3.72 4.93 85.23 0.42 4.14 15 14 N -0.87 -50.08 13.93 21.83 0.30 -49.78 15 15 Si 0.96 45.20 24.58 68.60 1.69 46.89 15 16 H -0.23 -10.13 5.43 99.48 0.54 -9.59 15 17 H -0.30 -13.75 7.11 99.48 0.71 -13.04 15 18 H -0.28 -13.50 7.11 99.48 0.71 -12.80 15 19 H 0.07 1.83 7.66 -2.39 -0.02 1.82 15 20 H 0.06 1.62 7.66 -2.39 -0.02 1.61 15 21 H 0.10 2.81 8.14 -2.39 -0.02 2.79 15 22 H 0.14 4.39 6.27 -2.91 -0.02 4.37 15 23 H 0.14 4.21 8.06 -2.91 -0.02 4.19 15 24 H 0.40 13.18 7.49 -92.71 -0.69 12.49 15 25 H 0.40 16.07 7.47 -92.71 -0.69 15.38 15 26 H 0.28 14.84 8.30 -92.71 -0.77 14.07 15 Total: -1.00 -61.61 233.33 3.08 -58.53 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: -0.32 Total: 24.46 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: 2.48 Total: -28.25 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -0.15 Total: -83.75 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.54 Total: -15.00 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.69 Total: 46.89 kcal Atomic # 17 Polarization: -2.79 SS G_CDS: -0.07 Total: -2.86 kcal Total: -61.61 3.08 -58.53 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715539.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.737 kcal (2) G-P(sol) polarization free energy of solvation -61.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds