Wall clock time and date at job start Mon Mar 30 2020 02:58:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.35775 * 116.99833 * 2 1
4 4 C 1.38974 * 120.22236 * 270.27163 * 3 2 1
5 5 N 1.40083 * 119.95652 * 0.02562 * 4 3 2
6 6 C 1.38826 * 120.08454 * 180.25902 * 4 3 2
7 7 C 1.38758 * 120.54041 * 359.74025 * 6 4 3
8 8 C 1.37586 * 120.44751 * 359.97438 * 7 6 4
9 9 Cl 1.73593 * 120.05275 * 179.97438 * 8 7 6
10 10 C 1.40973 * 119.89548 * 0.02562 * 8 7 6
11 11 C 1.41146 * 120.26171 * 179.97438 * 10 8 7
12 12 H 1.08007 * 119.99584 * 39.40906 * 11 10 8
13 13 C 1.39911 * 120.00018 * 219.13178 * 11 10 8
14 14 N 1.30882 * 120.00110 * 20.38790 * 13 11 10
15 15 Si 1.86807 * 119.99916 * 200.38595 * 13 11 10
16 16 H 1.48499 * 109.47182 * 59.99929 * 15 13 11
17 17 H 1.48503 * 109.46917 * 180.02562 * 15 13 11
18 18 H 1.48503 * 109.47100 * 299.99748 * 15 13 11
19 19 H 1.08993 * 109.47198 * 60.00578 * 1 2 3
20 20 H 1.08999 * 109.46975 * 179.97438 * 1 2 3
21 21 H 1.08998 * 109.47282 * 300.00290 * 1 2 3
22 22 H 0.97000 * 120.00168 * 180.23757 * 5 4 3
23 23 H 0.97002 * 119.99947 * 0.23290 * 5 4 3
24 24 H 1.08001 * 119.73110 * 179.72165 * 6 4 3
25 25 H 1.08002 * 119.78196 * 180.02562 * 7 6 4
26 26 H 0.97000 * 120.00124 * 183.41936 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0453 1.2098 0.0000
4 6 2.3578 1.8357 -1.2008
5 7 2.0360 1.2178 -2.4162
6 6 2.9929 3.0701 -1.1975
7 6 3.3168 3.6932 -0.0008
8 6 3.0124 3.0962 1.2008
9 17 3.4229 3.8846 2.6919
10 6 2.3676 1.8427 1.2192
11 6 2.0522 1.2230 2.4475
12 1 1.6920 1.8164 3.2749
13 6 2.2007 -0.1608 2.5913
14 7 2.9813 -0.8234 1.7761
15 14 1.2850 -1.0625 3.9471
16 1 -0.1770 -0.8755 3.7660
17 1 1.6107 -2.5101 3.8862
18 1 1.6939 -0.5187 5.2671
19 1 -0.3633 0.5137 -0.8900
20 1 -0.3633 -1.0277 -0.0005
21 1 -0.3634 0.5139 0.8899
22 1 2.2569 1.6525 -3.2547
23 1 1.5922 0.3553 -2.4192
24 1 3.2371 3.5493 -2.1341
25 1 3.8104 4.6538 -0.0125
26 1 3.0459 -1.7889 1.8441
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000575715701.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:58:37
Heat of formation + Delta-G solvation = -25.253984 kcal
Electronic energy + Delta-G solvation = -13921.258966 eV
Core-core repulsion = 11411.804545 eV
Total energy + Delta-G solvation = -2509.454421 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 227.045 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-38.53572 -35.84849 -34.93176 -33.88038 -32.49699 -29.45274 -27.36217 -25.76909
-24.79422 -21.10105 -20.40520 -17.50349 -16.53771 -15.85785 -15.27965 -14.71424
-14.17658 -13.90761 -13.68903 -12.85611 -12.66490 -12.04171 -11.63216 -11.30445
-11.08183 -11.01463 -10.79870 -10.57795 -10.27806 -10.17177 -9.38668 -9.05030
-8.85245 -8.45839 -7.24515 -6.69631 -6.28824 -4.33972 2.69672 2.85367
3.13405 3.16670 3.22173 3.79005 4.04295 4.58354 4.84911 5.13939
5.55739 6.11249 6.18864 6.25885 6.46396 6.50934 6.84064 7.00155
7.24180 7.35356 7.56580 7.68894 7.86942 8.30832 8.41859 8.62700
8.75018 8.89910 9.25862 10.32261
Molecular weight = 227.05amu
Principal moments of inertia in cm(-1)
A = 0.021915 B = 0.015686 C = 0.009970
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1277.345200 B = 1784.605407 C = 2807.711794
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.288 6.288
3 C -0.039 4.039
4 C 0.218 3.782
5 N -0.886 5.886
6 C -0.290 4.290
7 C -0.049 4.049
8 C -0.152 4.152
9 Cl -0.118 7.118
10 C 0.144 3.856
11 C -0.460 4.460
12 H 0.083 0.917
13 C 0.096 3.904
14 N -0.747 5.747
15 Si 0.892 3.108
16 H -0.265 1.265
17 H -0.279 1.279
18 H -0.266 1.266
19 H 0.020 0.980
20 H 0.065 0.935
21 H 0.039 0.961
22 H 0.384 0.616
23 H 0.392 0.608
24 H 0.099 0.901
25 H 0.101 0.899
26 H 0.280 0.720
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.931 1.250 -3.364 4.633
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.203 6.203
3 C -0.089 4.089
4 C 0.115 3.885
5 N -0.426 5.426
6 C -0.314 4.314
7 C -0.069 4.069
8 C -0.180 4.180
9 Cl -0.090 7.090
10 C 0.139 3.861
11 C -0.488 4.488
12 H 0.101 0.899
13 C -0.127 4.127
14 N -0.369 5.369
15 Si 0.716 3.284
16 H -0.190 1.190
17 H -0.204 1.204
18 H -0.191 1.191
19 H 0.039 0.961
20 H 0.084 0.916
21 H 0.057 0.943
22 H 0.210 0.790
23 H 0.219 0.781
24 H 0.117 0.883
25 H 0.119 0.881
26 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -2.637 0.933 -3.195 4.247
hybrid contribution -0.622 -0.420 0.333 0.821
sum -3.259 0.513 -2.862 4.367
Atomic orbital electron populations
1.22767 0.84810 1.00154 0.99058 1.86224 1.15448 1.24999 1.93616
1.17772 1.10383 0.91259 0.89458 1.17967 0.93816 0.91289 0.85427
1.42313 1.70777 1.24830 1.04706 1.19579 1.17383 0.98092 0.96326
1.20212 0.98064 0.97744 0.90858 1.20597 1.13700 0.99544 0.84155
1.98196 1.93195 1.80311 1.37308 1.17353 0.87568 0.88057 0.93093
1.19238 1.39572 0.92336 0.97650 0.89896 1.25626 0.93117 0.97484
0.96451 1.69755 1.25404 1.09299 1.32464 0.86642 0.81190 0.78449
0.82109 1.18995 1.20437 1.19116 0.96127 0.91607 0.94258 0.78977
0.78088 0.88304 0.88119 0.90884
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.56 11.13 101.05 1.12 1.68 15
2 O -0.29 -6.85 6.56 -19.04 -0.12 -6.98 15
3 C -0.04 -0.97 5.23 -38.22 -0.20 -1.17 15
4 C 0.22 4.86 6.76 -83.60 -0.57 4.29 15
5 N -0.89 -15.89 9.09 32.49 0.30 -15.59 15
6 C -0.29 -6.23 9.88 -39.17 -0.39 -6.62 15
7 C -0.05 -1.09 9.79 -39.63 -0.39 -1.48 15
8 C -0.15 -3.71 6.37 -38.78 -0.25 -3.95 15
9 Cl -0.12 -2.64 27.83 -51.86 -1.44 -4.09 15
10 C 0.14 3.76 5.37 -106.67 -0.57 3.19 15
11 C -0.46 -12.09 8.10 -37.85 -0.31 -12.40 15
12 H 0.08 2.16 7.58 -52.48 -0.40 1.77 15
13 C 0.10 2.43 4.39 -17.33 -0.08 2.35 15
14 N -0.75 -19.61 11.26 55.55 0.63 -18.98 15
15 Si 0.89 19.01 29.61 -169.99 -5.03 13.97 15
16 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15
17 H -0.28 -5.81 7.11 56.52 0.40 -5.41 15
18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 15
19 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 15
20 H 0.07 1.15 8.14 -51.93 -0.42 0.73 15
21 H 0.04 0.82 8.14 -51.93 -0.42 0.40 15
22 H 0.38 5.71 8.84 -40.82 -0.36 5.35 15
23 H 0.39 6.78 8.19 -40.82 -0.33 6.45 15
24 H 0.10 1.85 8.06 -52.49 -0.42 1.43 15
25 H 0.10 1.98 8.06 -52.49 -0.42 1.55 15
26 H 0.28 6.83 8.30 -40.82 -0.34 6.49 15
LS Contribution 246.14 15.07 3.71 3.71
Total: -1.00 -27.85 246.14 -5.93 -33.78
By element:
Atomic # 1 Polarization: 10.62 SS G_CDS: -2.34 Total: 8.28 kcal
Atomic # 6 Polarization: -12.48 SS G_CDS: -1.62 Total: -14.10 kcal
Atomic # 7 Polarization: -35.50 SS G_CDS: 0.92 Total: -34.58 kcal
Atomic # 8 Polarization: -6.85 SS G_CDS: -0.12 Total: -6.98 kcal
Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.97 kcal
Atomic # 17 Polarization: -2.64 SS G_CDS: -1.44 Total: -4.09 kcal
Total LS contribution 3.71 Total: 3.71 kcal
Total: -27.85 -5.93 -33.78 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000575715701.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.526 kcal
(2) G-P(sol) polarization free energy of solvation -27.851 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.325 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.929 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.780 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.254 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds