Wall clock time and date at job start Mon Mar 30 2020 03:00:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42893 * 1
3 3 C 1.35752 * 116.99799 * 2 1
4 4 C 1.39047 * 119.83805 * 0.02562 * 3 2 1
5 5 C 1.37632 * 120.23743 * 179.97438 * 4 3 2
6 6 Cl 1.73601 * 120.04722 * 180.02562 * 5 4 3
7 7 C 1.41016 * 119.90227 * 0.02562 * 5 4 3
8 8 C 1.41154 * 120.15163 * 180.02562 * 7 5 4
9 9 H 1.07992 * 120.00651 * 329.77738 * 8 7 5
10 10 C 1.39861 * 119.99666 * 149.77933 * 8 7 5
11 11 N 1.30903 * 119.99729 * 161.98552 * 10 8 7
12 12 Si 1.86802 * 119.99871 * 341.98299 * 10 8 7
13 13 H 1.48499 * 109.46744 * 95.40515 * 12 10 8
14 14 H 1.48498 * 109.46885 * 215.40121 * 12 10 8
15 15 H 1.48495 * 109.47198 * 335.40421 * 12 10 8
16 16 C 1.40755 * 119.69064 * 359.97438 * 7 5 4
17 17 C 1.37900 * 119.75643 * 359.74710 * 16 7 5
18 18 N 1.39902 * 119.95568 * 180.24893 * 17 16 7
19 19 H 1.09009 * 109.47493 * 59.99406 * 1 2 3
20 20 H 1.09005 * 109.47539 * 299.99343 * 1 2 3
21 21 H 1.09000 * 109.47142 * 179.97438 * 1 2 3
22 22 H 1.08003 * 119.88229 * 359.95346 * 4 3 2
23 23 H 0.97004 * 119.99980 * 179.97438 * 11 10 8
24 24 H 1.07991 * 120.12208 * 179.97438 * 16 7 5
25 25 H 0.97002 * 120.00479 * 180.25306 * 18 17 16
26 26 H 0.96995 * 119.99994 * 0.26112 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0452 1.2096 0.0000
4 6 1.2845 2.3736 0.0005
5 6 1.9008 3.6042 0.0011
6 17 0.9463 5.0543 0.0024
7 6 3.3086 3.6855 0.0005
8 6 3.9461 4.9449 0.0016
9 1 3.4688 5.7922 -0.4680
10 6 5.1960 5.0954 0.6109
11 7 5.9442 6.1301 0.3227
12 14 5.7975 3.8198 1.8359
13 1 6.6608 2.8328 1.1389
14 1 6.5777 4.4910 2.9064
15 1 4.6324 3.1217 2.4360
16 6 4.0751 2.5049 0.0000
17 6 3.4437 1.2790 0.0053
18 7 4.2015 0.1030 0.0100
19 1 -0.3634 0.5140 -0.8900
20 1 -0.3634 0.5137 0.8901
21 1 -0.3633 -1.0277 -0.0005
22 1 0.2063 2.3117 0.0002
23 1 6.8109 6.2347 0.7456
24 1 5.1536 2.5590 -0.0008
25 1 3.7581 -0.7598 0.0100
26 1 5.1703 0.1503 0.0134
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000575715751.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:00:44
Heat of formation + Delta-G solvation = -50.152196 kcal
Electronic energy + Delta-G solvation = -13545.479611 eV
Core-core repulsion = 11034.945522 eV
Total energy + Delta-G solvation = -2510.534088 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 227.045 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-40.69097 -38.32728 -36.90199 -35.71269 -34.56406 -31.73613 -29.34506 -28.29303
-26.25526 -23.31106 -22.17791 -19.51409 -18.84132 -17.86640 -17.13202 -16.56807
-16.34779 -16.03649 -15.11102 -14.88556 -14.68473 -14.16947 -14.10374 -13.22652
-12.84465 -12.79060 -12.54613 -12.27828 -12.05289 -11.72904 -11.59319 -11.36441
-11.05486 -10.58876 -9.27490 -8.85811 -8.07994 -6.38221 0.72691 0.79254
1.28109 1.43645 1.53003 1.84705 2.15896 2.59679 2.70565 3.21066
3.43657 4.11785 4.47872 4.52668 4.70007 4.74957 4.80785 5.00183
5.12822 5.31478 5.41769 5.71022 5.96798 6.30500 6.48340 6.58521
6.82670 6.98945 7.19657 8.21919
Molecular weight = 227.05amu
Principal moments of inertia in cm(-1)
A = 0.025056 B = 0.012876 C = 0.009004
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1117.206664 B = 2174.093770 C = 3109.087034
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.333 6.333
3 C -0.050 4.050
4 C -0.109 4.109
5 C -0.157 4.157
6 Cl -0.103 7.103
7 C 0.095 3.905
8 C -0.464 4.464
9 H 0.068 0.932
10 C 0.051 3.949
11 N -0.845 5.845
12 Si 0.964 3.036
13 H -0.253 1.253
14 H -0.282 1.282
15 H -0.257 1.257
16 C -0.287 4.287
17 C 0.234 3.766
18 N -0.867 5.867
19 H 0.049 0.951
20 H 0.049 0.951
21 H 0.120 0.880
22 H 0.138 0.862
23 H 0.293 0.707
24 H 0.114 0.886
25 H 0.406 0.594
26 H 0.401 0.599
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.154 -11.146 1.395 12.359
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.249 6.249
3 C -0.098 4.098
4 C -0.129 4.129
5 C -0.186 4.186
6 Cl -0.075 7.075
7 C 0.091 3.909
8 C -0.494 4.494
9 H 0.086 0.914
10 C -0.164 4.164
11 N -0.471 5.471
12 Si 0.788 3.212
13 H -0.178 1.178
14 H -0.209 1.209
15 H -0.181 1.181
16 C -0.312 4.312
17 C 0.129 3.871
18 N -0.409 5.409
19 H 0.068 0.932
20 H 0.068 0.932
21 H 0.138 0.862
22 H 0.156 0.844
23 H 0.104 0.896
24 H 0.132 0.868
25 H 0.236 0.764
26 H 0.229 0.771
Dipole moment (debyes) X Y Z Total
from point charges -4.979 -10.966 1.391 12.123
hybrid contribution 0.269 0.263 0.285 0.472
sum -4.710 -10.702 1.675 11.812
Atomic orbital electron populations
1.23095 0.77978 1.04623 1.01031 1.85748 1.21944 1.25701 1.91532
1.17896 0.89762 0.84399 1.17730 1.20627 0.99496 0.89917 1.02901
1.20478 0.90755 0.85848 1.21519 1.98204 1.71630 1.39894 1.97769
1.17364 0.90348 0.93095 0.90120 1.19360 1.01591 0.95765 1.32645
0.91429 1.26781 0.94830 0.97524 0.97290 1.69758 1.10498 1.29776
1.37059 0.85505 0.79090 0.78424 0.78202 1.17798 1.20934 1.18091
1.20263 0.98293 0.90290 1.22323 1.16986 0.87881 0.87472 0.94790
1.42172 1.08189 1.04917 1.85590 0.93198 0.93246 0.86230 0.84441
0.89640 0.86830 0.76422 0.77071
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.65 9.80 113.37 1.11 1.77 15
2 O -0.33 -10.89 9.72 -90.77 -0.88 -11.77 15
3 C -0.05 -1.98 6.73 22.90 0.15 -1.82 15
4 C -0.11 -4.43 8.78 22.32 0.20 -4.23 15
5 C -0.16 -7.33 6.37 22.81 0.15 -7.18 15
6 Cl -0.10 -4.52 27.65 -2.72 -0.08 -4.60 15
7 C 0.09 4.82 5.10 -21.27 -0.11 4.71 15
8 C -0.46 -25.79 8.94 23.38 0.21 -25.58 15
9 H 0.07 4.07 7.41 -2.91 -0.02 4.04 15
10 C 0.05 2.69 5.40 85.22 0.46 3.15 15
11 N -0.84 -45.95 13.93 21.81 0.30 -45.65 15
12 Si 0.96 42.35 24.52 68.60 1.68 44.03 15
13 H -0.25 -10.16 6.71 99.48 0.67 -9.49 15
14 H -0.28 -11.81 7.11 99.48 0.71 -11.10 15
15 H -0.26 -11.74 6.86 99.48 0.68 -11.06 15
16 C -0.29 -13.25 6.98 22.81 0.16 -13.09 15
17 C 0.23 9.49 6.76 38.21 0.26 9.75 15
18 N -0.87 -27.22 9.08 -51.15 -0.46 -27.68 15
19 H 0.05 1.15 7.65 -2.38 -0.02 1.13 15
20 H 0.05 1.14 7.65 -2.38 -0.02 1.12 15
21 H 0.12 2.00 8.14 -2.39 -0.02 1.98 15
22 H 0.14 4.74 6.26 -2.91 -0.02 4.72 15
23 H 0.29 14.32 8.30 -92.71 -0.77 13.55 15
24 H 0.11 5.16 4.76 -2.92 -0.01 5.15 15
25 H 0.41 10.98 8.18 -92.71 -0.76 10.23 15
26 H 0.40 11.06 8.84 -92.71 -0.82 10.24 15
Total: -1.00 -60.44 237.62 2.75 -57.69
By element:
Atomic # 1 Polarization: 20.91 SS G_CDS: -0.40 Total: 20.51 kcal
Atomic # 6 Polarization: -35.12 SS G_CDS: 2.59 Total: -32.53 kcal
Atomic # 7 Polarization: -73.17 SS G_CDS: -0.16 Total: -73.33 kcal
Atomic # 8 Polarization: -10.89 SS G_CDS: -0.88 Total: -11.77 kcal
Atomic # 14 Polarization: 42.35 SS G_CDS: 1.68 Total: 44.03 kcal
Atomic # 17 Polarization: -4.52 SS G_CDS: -0.08 Total: -4.60 kcal
Total: -60.44 2.75 -57.69 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000575715751.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.536 kcal
(2) G-P(sol) polarization free energy of solvation -60.437 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.901 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.688 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.152 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds