Wall clock time and date at job start Mon Mar 30 2020 03:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35752 * 116.99799 * 2 1 4 4 C 1.39047 * 119.83805 * 0.02562 * 3 2 1 5 5 C 1.37632 * 120.23743 * 179.97438 * 4 3 2 6 6 Cl 1.73601 * 120.04722 * 180.02562 * 5 4 3 7 7 C 1.41016 * 119.90227 * 0.02562 * 5 4 3 8 8 C 1.41154 * 120.15163 * 180.02562 * 7 5 4 9 9 H 1.07992 * 120.00651 * 329.77738 * 8 7 5 10 10 C 1.39861 * 119.99666 * 149.77933 * 8 7 5 11 11 N 1.30903 * 119.99729 * 161.98552 * 10 8 7 12 12 Si 1.86802 * 119.99871 * 341.98299 * 10 8 7 13 13 H 1.48499 * 109.46744 * 95.40515 * 12 10 8 14 14 H 1.48498 * 109.46885 * 215.40121 * 12 10 8 15 15 H 1.48495 * 109.47198 * 335.40421 * 12 10 8 16 16 C 1.40755 * 119.69064 * 359.97438 * 7 5 4 17 17 C 1.37900 * 119.75643 * 359.74710 * 16 7 5 18 18 N 1.39902 * 119.95568 * 180.24893 * 17 16 7 19 19 H 1.09009 * 109.47493 * 59.99406 * 1 2 3 20 20 H 1.09005 * 109.47539 * 299.99343 * 1 2 3 21 21 H 1.09000 * 109.47142 * 179.97438 * 1 2 3 22 22 H 1.08003 * 119.88229 * 359.95346 * 4 3 2 23 23 H 0.97004 * 119.99980 * 179.97438 * 11 10 8 24 24 H 1.07991 * 120.12208 * 179.97438 * 16 7 5 25 25 H 0.97002 * 120.00479 * 180.25306 * 18 17 16 26 26 H 0.96995 * 119.99994 * 0.26112 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 1.2845 2.3736 0.0005 5 6 1.9008 3.6042 0.0011 6 17 0.9463 5.0543 0.0024 7 6 3.3086 3.6855 0.0005 8 6 3.9461 4.9449 0.0016 9 1 3.4688 5.7922 -0.4680 10 6 5.1960 5.0954 0.6109 11 7 5.9442 6.1301 0.3227 12 14 5.7975 3.8198 1.8359 13 1 6.6608 2.8328 1.1389 14 1 6.5777 4.4910 2.9064 15 1 4.6324 3.1217 2.4360 16 6 4.0751 2.5049 0.0000 17 6 3.4437 1.2790 0.0053 18 7 4.2015 0.1030 0.0100 19 1 -0.3634 0.5140 -0.8900 20 1 -0.3634 0.5137 0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 0.2063 2.3117 0.0002 23 1 6.8109 6.2347 0.7456 24 1 5.1536 2.5590 -0.0008 25 1 3.7581 -0.7598 0.0100 26 1 5.1703 0.1503 0.0134 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575715751.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:44 Heat of formation + Delta-G solvation = -50.152196 kcal Electronic energy + Delta-G solvation = -13545.479611 eV Core-core repulsion = 11034.945522 eV Total energy + Delta-G solvation = -2510.534088 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.045 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.69097 -38.32728 -36.90199 -35.71269 -34.56406 -31.73613 -29.34506 -28.29303 -26.25526 -23.31106 -22.17791 -19.51409 -18.84132 -17.86640 -17.13202 -16.56807 -16.34779 -16.03649 -15.11102 -14.88556 -14.68473 -14.16947 -14.10374 -13.22652 -12.84465 -12.79060 -12.54613 -12.27828 -12.05289 -11.72904 -11.59319 -11.36441 -11.05486 -10.58876 -9.27490 -8.85811 -8.07994 -6.38221 0.72691 0.79254 1.28109 1.43645 1.53003 1.84705 2.15896 2.59679 2.70565 3.21066 3.43657 4.11785 4.47872 4.52668 4.70007 4.74957 4.80785 5.00183 5.12822 5.31478 5.41769 5.71022 5.96798 6.30500 6.48340 6.58521 6.82670 6.98945 7.19657 8.21919 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.025056 B = 0.012876 C = 0.009004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.206664 B = 2174.093770 C = 3109.087034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.333 6.333 3 C -0.050 4.050 4 C -0.109 4.109 5 C -0.157 4.157 6 Cl -0.103 7.103 7 C 0.095 3.905 8 C -0.464 4.464 9 H 0.068 0.932 10 C 0.051 3.949 11 N -0.845 5.845 12 Si 0.964 3.036 13 H -0.253 1.253 14 H -0.282 1.282 15 H -0.257 1.257 16 C -0.287 4.287 17 C 0.234 3.766 18 N -0.867 5.867 19 H 0.049 0.951 20 H 0.049 0.951 21 H 0.120 0.880 22 H 0.138 0.862 23 H 0.293 0.707 24 H 0.114 0.886 25 H 0.406 0.594 26 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.154 -11.146 1.395 12.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.249 6.249 3 C -0.098 4.098 4 C -0.129 4.129 5 C -0.186 4.186 6 Cl -0.075 7.075 7 C 0.091 3.909 8 C -0.494 4.494 9 H 0.086 0.914 10 C -0.164 4.164 11 N -0.471 5.471 12 Si 0.788 3.212 13 H -0.178 1.178 14 H -0.209 1.209 15 H -0.181 1.181 16 C -0.312 4.312 17 C 0.129 3.871 18 N -0.409 5.409 19 H 0.068 0.932 20 H 0.068 0.932 21 H 0.138 0.862 22 H 0.156 0.844 23 H 0.104 0.896 24 H 0.132 0.868 25 H 0.236 0.764 26 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -4.979 -10.966 1.391 12.123 hybrid contribution 0.269 0.263 0.285 0.472 sum -4.710 -10.702 1.675 11.812 Atomic orbital electron populations 1.23095 0.77978 1.04623 1.01031 1.85748 1.21944 1.25701 1.91532 1.17896 0.89762 0.84399 1.17730 1.20627 0.99496 0.89917 1.02901 1.20478 0.90755 0.85848 1.21519 1.98204 1.71630 1.39894 1.97769 1.17364 0.90348 0.93095 0.90120 1.19360 1.01591 0.95765 1.32645 0.91429 1.26781 0.94830 0.97524 0.97290 1.69758 1.10498 1.29776 1.37059 0.85505 0.79090 0.78424 0.78202 1.17798 1.20934 1.18091 1.20263 0.98293 0.90290 1.22323 1.16986 0.87881 0.87472 0.94790 1.42172 1.08189 1.04917 1.85590 0.93198 0.93246 0.86230 0.84441 0.89640 0.86830 0.76422 0.77071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 9.80 113.37 1.11 1.77 15 2 O -0.33 -10.89 9.72 -90.77 -0.88 -11.77 15 3 C -0.05 -1.98 6.73 22.90 0.15 -1.82 15 4 C -0.11 -4.43 8.78 22.32 0.20 -4.23 15 5 C -0.16 -7.33 6.37 22.81 0.15 -7.18 15 6 Cl -0.10 -4.52 27.65 -2.72 -0.08 -4.60 15 7 C 0.09 4.82 5.10 -21.27 -0.11 4.71 15 8 C -0.46 -25.79 8.94 23.38 0.21 -25.58 15 9 H 0.07 4.07 7.41 -2.91 -0.02 4.04 15 10 C 0.05 2.69 5.40 85.22 0.46 3.15 15 11 N -0.84 -45.95 13.93 21.81 0.30 -45.65 15 12 Si 0.96 42.35 24.52 68.60 1.68 44.03 15 13 H -0.25 -10.16 6.71 99.48 0.67 -9.49 15 14 H -0.28 -11.81 7.11 99.48 0.71 -11.10 15 15 H -0.26 -11.74 6.86 99.48 0.68 -11.06 15 16 C -0.29 -13.25 6.98 22.81 0.16 -13.09 15 17 C 0.23 9.49 6.76 38.21 0.26 9.75 15 18 N -0.87 -27.22 9.08 -51.15 -0.46 -27.68 15 19 H 0.05 1.15 7.65 -2.38 -0.02 1.13 15 20 H 0.05 1.14 7.65 -2.38 -0.02 1.12 15 21 H 0.12 2.00 8.14 -2.39 -0.02 1.98 15 22 H 0.14 4.74 6.26 -2.91 -0.02 4.72 15 23 H 0.29 14.32 8.30 -92.71 -0.77 13.55 15 24 H 0.11 5.16 4.76 -2.92 -0.01 5.15 15 25 H 0.41 10.98 8.18 -92.71 -0.76 10.23 15 26 H 0.40 11.06 8.84 -92.71 -0.82 10.24 15 Total: -1.00 -60.44 237.62 2.75 -57.69 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -0.40 Total: 20.51 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 2.59 Total: -32.53 kcal Atomic # 7 Polarization: -73.17 SS G_CDS: -0.16 Total: -73.33 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -0.88 Total: -11.77 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.68 Total: 44.03 kcal Atomic # 17 Polarization: -4.52 SS G_CDS: -0.08 Total: -4.60 kcal Total: -60.44 2.75 -57.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575715751.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.536 kcal (2) G-P(sol) polarization free energy of solvation -60.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds